data_4YQH # _model_server_result.job_id 6hxOVM5C-iflNIsjUvt3jQ _model_server_result.datetime_utc '2024-11-22 09:36:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 4YQH # _exptl.entry_id 4YQH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YQH _cell.length_a 50.15 _cell.length_b 81.495 _cell.length_c 159.677 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA monomeric 1 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 81 A HIS 529 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 A NE2 HIS 115 A HIS 563 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc3 A OD2 ASP 116 A ASP 564 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc4 A OD1 ASP 116 A ASP 564 1_555 D MG MG . A MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc5 A OD1 ASP 226 A ASP 674 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc6 C ZN ZN . A ZN 801 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 D MG MG . A MG 802 1_555 I O HOH . A HOH 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc8 D MG MG . A MG 802 1_555 I O HOH . A HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc9 D MG MG . A MG 802 1_555 I O HOH . A HOH 914 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc10 D MG MG . A MG 802 1_555 I O HOH . A HOH 915 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc11 B NE2 HIS 81 B HIS 529 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc12 B NE2 HIS 115 B HIS 563 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc13 B OD2 ASP 116 B ASP 564 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc14 B OD1 ASP 116 B ASP 564 1_555 G MG MG . B MG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc15 B OD1 ASP 226 B ASP 674 1_555 F ZN ZN . B ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc16 F ZN ZN . B ZN 801 1_555 J O HOH . B HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc17 G MG MG . B MG 802 1_555 J O HOH . B HOH 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc18 G MG MG . B MG 802 1_555 J O HOH . B HOH 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YQH _atom_sites.fract_transf_matrix[1][1] 0.01994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012271 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006263 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 801 401 ZN ZN . D 3 MG A 1 802 402 MG MG . E 4 4F7 A 1 803 1 4F7 CO7 . F 2 ZN B 1 801 401 ZN ZN . G 3 MG B 1 802 402 MG MG . H 4 4F7 B 1 803 1 4F7 CO7 . I 5 HOH A 1 901 4 HOH HOH . I 5 HOH A 2 902 2 HOH HOH . I 5 HOH A 3 903 3 HOH HOH . I 5 HOH A 4 904 5 HOH HOH . I 5 HOH A 5 905 7 HOH HOH . I 5 HOH A 6 906 9 HOH HOH . I 5 HOH A 7 907 10 HOH HOH . I 5 HOH A 8 908 11 HOH HOH . I 5 HOH A 9 909 15 HOH HOH . I 5 HOH A 10 910 25 HOH HOH . I 5 HOH A 11 911 26 HOH HOH . I 5 HOH A 12 912 27 HOH HOH . I 5 HOH A 13 913 28 HOH HOH . I 5 HOH A 14 914 29 HOH HOH . I 5 HOH A 15 915 30 HOH HOH . I 5 HOH A 16 916 33 HOH HOH . I 5 HOH A 17 917 35 HOH HOH . I 5 HOH A 18 918 36 HOH HOH . I 5 HOH A 19 919 37 HOH HOH . I 5 HOH A 20 920 38 HOH HOH . I 5 HOH A 21 921 43 HOH HOH . I 5 HOH A 22 922 44 HOH HOH . I 5 HOH A 23 923 45 HOH HOH . I 5 HOH A 24 924 46 HOH HOH . I 5 HOH A 25 925 48 HOH HOH . J 5 HOH B 1 901 47 HOH HOH . J 5 HOH B 2 902 32 HOH HOH . J 5 HOH B 3 903 6 HOH HOH . J 5 HOH B 4 904 31 HOH HOH . J 5 HOH B 5 905 1 HOH HOH . J 5 HOH B 6 906 8 HOH HOH . J 5 HOH B 7 907 12 HOH HOH . J 5 HOH B 8 908 13 HOH HOH . J 5 HOH B 9 909 14 HOH HOH . J 5 HOH B 10 910 16 HOH HOH . J 5 HOH B 11 911 17 HOH HOH . J 5 HOH B 12 912 18 HOH HOH . J 5 HOH B 13 913 19 HOH HOH . J 5 HOH B 14 914 20 HOH HOH . J 5 HOH B 15 915 21 HOH HOH . J 5 HOH B 16 916 22 HOH HOH . J 5 HOH B 17 917 23 HOH HOH . J 5 HOH B 18 918 24 HOH HOH . J 5 HOH B 19 919 34 HOH HOH . J 5 HOH B 20 920 39 HOH HOH . J 5 HOH B 21 921 40 HOH HOH . J 5 HOH B 22 922 41 HOH HOH . J 5 HOH B 23 923 42 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -13.677 _atom_site.Cartn_y -4.737 _atom_site.Cartn_z 32.77 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 802 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 636 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #