data_4YQJ # _model_server_result.job_id Vx1XpVMQf8uRNnpKHDBC0Q _model_server_result.datetime_utc '2024-10-19 07:45:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQJ # _exptl.entry_id 4YQJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.259 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-2-(cyclopentylamino)pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQJ _cell.length_a 93.859 _cell.length_b 93.859 _cell.length_c 177.633 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O' _chem_comp.formula_weight 221.259 _chem_comp.id 4GT _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-2-(cyclopentylamino)pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 4GT sing 1 n n C11 C10 4GT sing 2 n n C12 C13 4GT sing 3 n n C10 C9 4GT sing 4 n n C13 C9 4GT sing 5 n n C9 N8 4GT sing 6 n n N8 C7 4GT sing 7 n n N14 C7 4GT doub 8 n y N14 C15 4GT sing 9 n y C7 N6 4GT sing 10 n y N16 C15 4GT sing 11 n n C15 C4 4GT doub 12 n y N6 C5 4GT doub 13 n y C4 C5 4GT sing 14 n y C4 C2 4GT sing 15 n n O3 C2 4GT doub 16 n n C2 N1 4GT sing 17 n n C5 H1 4GT sing 18 n n C11 H2 4GT sing 19 n n C11 H3 4GT sing 20 n n C12 H4 4GT sing 21 n n C12 H5 4GT sing 22 n n C10 H6 4GT sing 23 n n C10 H7 4GT sing 24 n n C13 H8 4GT sing 25 n n C13 H9 4GT sing 26 n n C9 H10 4GT sing 27 n n N16 H11 4GT sing 28 n n N16 H12 4GT sing 29 n n N1 H13 4GT sing 30 n n N1 H14 4GT sing 31 n n N8 H15 4GT sing 32 n n # _atom_sites.entry_id 4YQJ _atom_sites.fract_transf_matrix[1][1] 0.010654 _atom_sites.fract_transf_matrix[1][2] 0.006151 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4GT A 1 301 1 4GT UNL . C 3 HOH A 1 401 53 HOH HOH . C 3 HOH A 2 402 46 HOH HOH . C 3 HOH A 3 403 44 HOH HOH . C 3 HOH A 4 404 158 HOH HOH . C 3 HOH A 5 405 68 HOH HOH . C 3 HOH A 6 406 33 HOH HOH . C 3 HOH A 7 407 101 HOH HOH . C 3 HOH A 8 408 67 HOH HOH . C 3 HOH A 9 409 77 HOH HOH . C 3 HOH A 10 410 164 HOH HOH . C 3 HOH A 11 411 119 HOH HOH . C 3 HOH A 12 412 6 HOH HOH . C 3 HOH A 13 413 166 HOH HOH . C 3 HOH A 14 414 84 HOH HOH . C 3 HOH A 15 415 49 HOH HOH . C 3 HOH A 16 416 20 HOH HOH . C 3 HOH A 17 417 10 HOH HOH . C 3 HOH A 18 418 88 HOH HOH . C 3 HOH A 19 419 154 HOH HOH . C 3 HOH A 20 420 95 HOH HOH . C 3 HOH A 21 421 58 HOH HOH . C 3 HOH A 22 422 120 HOH HOH . C 3 HOH A 23 423 13 HOH HOH . C 3 HOH A 24 424 86 HOH HOH . C 3 HOH A 25 425 35 HOH HOH . C 3 HOH A 26 426 37 HOH HOH . C 3 HOH A 27 427 4 HOH HOH . C 3 HOH A 28 428 92 HOH HOH . C 3 HOH A 29 429 98 HOH HOH . C 3 HOH A 30 430 52 HOH HOH . C 3 HOH A 31 431 17 HOH HOH . C 3 HOH A 32 432 152 HOH HOH . C 3 HOH A 33 433 104 HOH HOH . C 3 HOH A 34 434 143 HOH HOH . C 3 HOH A 35 435 69 HOH HOH . C 3 HOH A 36 436 105 HOH HOH . C 3 HOH A 37 437 47 HOH HOH . C 3 HOH A 38 438 16 HOH HOH . C 3 HOH A 39 439 168 HOH HOH . C 3 HOH A 40 440 32 HOH HOH . C 3 HOH A 41 441 5 HOH HOH . C 3 HOH A 42 442 2 HOH HOH . C 3 HOH A 43 443 149 HOH HOH . C 3 HOH A 44 444 66 HOH HOH . C 3 HOH A 45 445 27 HOH HOH . C 3 HOH A 46 446 150 HOH HOH . C 3 HOH A 47 447 31 HOH HOH . C 3 HOH A 48 448 9 HOH HOH . C 3 HOH A 49 449 64 HOH HOH . C 3 HOH A 50 450 21 HOH HOH . C 3 HOH A 51 451 30 HOH HOH . C 3 HOH A 52 452 18 HOH HOH . C 3 HOH A 53 453 114 HOH HOH . C 3 HOH A 54 454 148 HOH HOH . C 3 HOH A 55 455 175 HOH HOH . C 3 HOH A 56 456 160 HOH HOH . C 3 HOH A 57 457 137 HOH HOH . C 3 HOH A 58 458 135 HOH HOH . C 3 HOH A 59 459 122 HOH HOH . C 3 HOH A 60 460 12 HOH HOH . C 3 HOH A 61 461 81 HOH HOH . C 3 HOH A 62 462 132 HOH HOH . C 3 HOH A 63 463 42 HOH HOH . C 3 HOH A 64 464 57 HOH HOH . C 3 HOH A 65 465 8 HOH HOH . C 3 HOH A 66 466 99 HOH HOH . C 3 HOH A 67 467 72 HOH HOH . C 3 HOH A 68 468 118 HOH HOH . C 3 HOH A 69 469 78 HOH HOH . C 3 HOH A 70 470 61 HOH HOH . C 3 HOH A 71 471 145 HOH HOH . C 3 HOH A 72 472 94 HOH HOH . C 3 HOH A 73 473 110 HOH HOH . C 3 HOH A 74 474 87 HOH HOH . C 3 HOH A 75 475 96 HOH HOH . C 3 HOH A 76 476 59 HOH HOH . C 3 HOH A 77 477 117 HOH HOH . C 3 HOH A 78 478 76 HOH HOH . C 3 HOH A 79 479 167 HOH HOH . C 3 HOH A 80 480 108 HOH HOH . C 3 HOH A 81 481 129 HOH HOH . C 3 HOH A 82 482 173 HOH HOH . C 3 HOH A 83 483 139 HOH HOH . C 3 HOH A 84 484 100 HOH HOH . C 3 HOH A 85 485 153 HOH HOH . C 3 HOH A 86 486 71 HOH HOH . C 3 HOH A 87 487 169 HOH HOH . C 3 HOH A 88 488 80 HOH HOH . C 3 HOH A 89 489 162 HOH HOH . C 3 HOH A 90 490 172 HOH HOH . C 3 HOH A 91 491 45 HOH HOH . C 3 HOH A 92 492 138 HOH HOH . C 3 HOH A 93 493 62 HOH HOH . C 3 HOH A 94 494 90 HOH HOH . C 3 HOH A 95 495 156 HOH HOH . C 3 HOH A 96 496 89 HOH HOH . C 3 HOH A 97 497 174 HOH HOH . C 3 HOH A 98 498 151 HOH HOH . C 3 HOH A 99 499 116 HOH HOH . C 3 HOH A 100 500 36 HOH HOH . C 3 HOH A 101 501 142 HOH HOH . C 3 HOH A 102 502 124 HOH HOH . C 3 HOH A 103 503 126 HOH HOH . C 3 HOH A 104 504 170 HOH HOH . C 3 HOH A 105 505 107 HOH HOH . C 3 HOH A 106 506 140 HOH HOH . C 3 HOH A 107 507 136 HOH HOH . C 3 HOH A 108 508 1 HOH HOH . C 3 HOH A 109 509 3 HOH HOH . C 3 HOH A 110 510 7 HOH HOH . C 3 HOH A 111 511 11 HOH HOH . C 3 HOH A 112 512 14 HOH HOH . C 3 HOH A 113 513 15 HOH HOH . C 3 HOH A 114 514 19 HOH HOH . C 3 HOH A 115 515 22 HOH HOH . C 3 HOH A 116 516 23 HOH HOH . C 3 HOH A 117 517 24 HOH HOH . C 3 HOH A 118 518 25 HOH HOH . C 3 HOH A 119 519 26 HOH HOH . C 3 HOH A 120 520 28 HOH HOH . C 3 HOH A 121 521 29 HOH HOH . C 3 HOH A 122 522 34 HOH HOH . C 3 HOH A 123 523 38 HOH HOH . C 3 HOH A 124 524 39 HOH HOH . C 3 HOH A 125 525 40 HOH HOH . C 3 HOH A 126 526 41 HOH HOH . C 3 HOH A 127 527 43 HOH HOH . C 3 HOH A 128 528 48 HOH HOH . C 3 HOH A 129 529 50 HOH HOH . C 3 HOH A 130 530 51 HOH HOH . C 3 HOH A 131 531 54 HOH HOH . C 3 HOH A 132 532 55 HOH HOH . C 3 HOH A 133 533 56 HOH HOH . C 3 HOH A 134 534 60 HOH HOH . C 3 HOH A 135 535 63 HOH HOH . C 3 HOH A 136 536 65 HOH HOH . C 3 HOH A 137 537 70 HOH HOH . C 3 HOH A 138 538 73 HOH HOH . C 3 HOH A 139 539 74 HOH HOH . C 3 HOH A 140 540 75 HOH HOH . C 3 HOH A 141 541 79 HOH HOH . C 3 HOH A 142 542 82 HOH HOH . C 3 HOH A 143 543 83 HOH HOH . C 3 HOH A 144 544 85 HOH HOH . C 3 HOH A 145 545 91 HOH HOH . C 3 HOH A 146 546 93 HOH HOH . C 3 HOH A 147 547 97 HOH HOH . C 3 HOH A 148 548 102 HOH HOH . C 3 HOH A 149 549 103 HOH HOH . C 3 HOH A 150 550 106 HOH HOH . C 3 HOH A 151 551 109 HOH HOH . C 3 HOH A 152 552 111 HOH HOH . C 3 HOH A 153 553 112 HOH HOH . C 3 HOH A 154 554 113 HOH HOH . C 3 HOH A 155 555 115 HOH HOH . C 3 HOH A 156 556 121 HOH HOH . C 3 HOH A 157 557 123 HOH HOH . C 3 HOH A 158 558 125 HOH HOH . C 3 HOH A 159 559 127 HOH HOH . C 3 HOH A 160 560 128 HOH HOH . C 3 HOH A 161 561 130 HOH HOH . C 3 HOH A 162 562 131 HOH HOH . C 3 HOH A 163 563 133 HOH HOH . C 3 HOH A 164 564 134 HOH HOH . C 3 HOH A 165 565 141 HOH HOH . C 3 HOH A 166 566 144 HOH HOH . C 3 HOH A 167 567 146 HOH HOH . C 3 HOH A 168 568 147 HOH HOH . C 3 HOH A 169 569 155 HOH HOH . C 3 HOH A 170 570 157 HOH HOH . C 3 HOH A 171 571 159 HOH HOH . C 3 HOH A 172 572 161 HOH HOH . C 3 HOH A 173 573 163 HOH HOH . C 3 HOH A 174 574 165 HOH HOH . C 3 HOH A 175 575 171 HOH HOH . C 3 HOH A 176 576 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 4GT . . . B 2 -19.649 42.371 -7.2 1 20.03 ? C5 4GT 301 A 1 HETATM 2 C C4 4GT . . . B 2 -20.845 41.664 -7.357 1 17.69 ? C4 4GT 301 A 1 HETATM 3 C C15 4GT . . . B 2 -20.956 40.607 -8.351 1 15.41 ? C15 4GT 301 A 1 HETATM 4 C C7 4GT . . . B 2 -18.751 41.098 -8.928 1 20.04 ? C7 4GT 301 A 1 HETATM 5 C C2 4GT . . . B 2 -22.045 42.056 -6.483 1 22.25 ? C2 4GT 301 A 1 HETATM 6 C C11 4GT . . . B 2 -17.828 40.965 -13.043 1 26.43 ? C11 4GT 301 A 1 HETATM 7 C C12 4GT . . . B 2 -16.482 40.294 -12.876 1 25.46 ? C12 4GT 301 A 1 HETATM 8 C C10 4GT . . . B 2 -18.693 40.482 -11.903 1 23.18 ? C10 4GT 301 A 1 HETATM 9 C C13 4GT . . . B 2 -16.4 39.83 -11.463 1 18.42 ? C13 4GT 301 A 1 HETATM 10 C C9 4GT . . . B 2 -17.758 39.911 -10.887 1 19.75 ? C9 4GT 301 A 1 HETATM 11 N N6 4GT . . . B 2 -18.581 42.078 -7.969 1 19.44 ? N6 4GT 301 A 1 HETATM 12 N N14 4GT . . . B 2 -19.879 40.367 -9.087 1 19.08 ? N14 4GT 301 A 1 HETATM 13 N N16 4GT . . . B 2 -22.167 39.842 -8.562 1 18.08 ? N16 4GT 301 A 1 HETATM 14 N N1 4GT . . . B 2 -21.947 43.231 -5.642 1 20.82 ? N1 4GT 301 A 1 HETATM 15 N N8 4GT . . . B 2 -17.633 40.795 -9.752 1 16.37 ? N8 4GT 301 A 1 HETATM 16 O O3 4GT . . . B 2 -23.099 41.406 -6.539 1 20.17 ? O3 4GT 301 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 16 #