data_4YQM # _model_server_result.job_id hX7jBBS6d3qXWC6rKI2OGQ _model_server_result.datetime_utc '2024-11-05 11:43:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 4YQM # _exptl.entry_id 4YQM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.08 _cell.angle_gamma 90 _cell.entry_id 4YQM _cell.length_a 182.838 _cell.length_b 71.247 _cell.length_c 61.852 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,J 1 1,2 B,C,F,G,H,I,K,L 2 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -15.047135 0 59.99378 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N ? 3 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 35 A CYS 32 1_555 D C7 4G9 . A 4G9 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.807 ? covale ? covale2 B SG CYS 35 B CYS 32 1_555 F C7 4G9 . B 4G9 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.824 ? covale ? covale3 C SG CYS 35 C CYS 32 1_555 H C7 4G9 . C 4G9 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 248 n n O1 C6 MES sing 249 n n C2 C3 MES sing 250 n n C2 H21 MES sing 251 n n C2 H22 MES sing 252 n n C3 N4 MES sing 253 n n C3 H31 MES sing 254 n n C3 H32 MES sing 255 n n N4 C5 MES sing 256 n n N4 C7 MES sing 257 n n N4 HN4 MES sing 258 n n C5 C6 MES sing 259 n n C5 H51 MES sing 260 n n C5 H52 MES sing 261 n n C6 H61 MES sing 262 n n C6 H62 MES sing 263 n n C7 C8 MES sing 264 n n C7 H71 MES sing 265 n n C7 H72 MES sing 266 n n C8 S MES sing 267 n n C8 H81 MES sing 268 n n C8 H82 MES sing 269 n n S O1S MES doub 270 n n S O2S MES doub 271 n n S O3S MES sing 272 n n # _atom_sites.entry_id 4YQM _atom_sites.fract_transf_matrix[1][1] 0.005469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001372 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014036 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 4G9 A 1 301 301 4G9 4G9 . E 3 MES A 1 302 302 MES MES . F 2 4G9 B 1 301 301 4G9 4G9 . G 3 MES B 1 302 302 MES MES . H 2 4G9 C 1 301 301 4G9 4G9 . I 3 MES C 1 302 302 MES MES . J 4 HOH A 1 401 407 HOH HOH . J 4 HOH A 2 402 415 HOH HOH . J 4 HOH A 3 403 408 HOH HOH . J 4 HOH A 4 404 401 HOH HOH . J 4 HOH A 5 405 402 HOH HOH . J 4 HOH A 6 406 422 HOH HOH . J 4 HOH A 7 407 403 HOH HOH . J 4 HOH A 8 408 420 HOH HOH . J 4 HOH A 9 409 412 HOH HOH . J 4 HOH A 10 410 411 HOH HOH . J 4 HOH A 11 411 406 HOH HOH . J 4 HOH A 12 412 410 HOH HOH . J 4 HOH A 13 413 421 HOH HOH . J 4 HOH A 14 414 409 HOH HOH . J 4 HOH A 15 415 405 HOH HOH . J 4 HOH A 16 416 404 HOH HOH . J 4 HOH A 17 417 419 HOH HOH . J 4 HOH A 18 418 416 HOH HOH . J 4 HOH A 19 419 423 HOH HOH . J 4 HOH A 20 420 414 HOH HOH . J 4 HOH A 21 421 417 HOH HOH . J 4 HOH A 22 422 418 HOH HOH . J 4 HOH A 23 423 413 HOH HOH . K 4 HOH B 1 401 413 HOH HOH . K 4 HOH B 2 402 428 HOH HOH . K 4 HOH B 3 403 412 HOH HOH . K 4 HOH B 4 404 440 HOH HOH . K 4 HOH B 5 405 415 HOH HOH . K 4 HOH B 6 406 402 HOH HOH . K 4 HOH B 7 407 436 HOH HOH . K 4 HOH B 8 408 417 HOH HOH . K 4 HOH B 9 409 418 HOH HOH . K 4 HOH B 10 410 439 HOH HOH . K 4 HOH B 11 411 401 HOH HOH . K 4 HOH B 12 412 435 HOH HOH . K 4 HOH B 13 413 406 HOH HOH . K 4 HOH B 14 414 407 HOH HOH . K 4 HOH B 15 415 405 HOH HOH . K 4 HOH B 16 416 434 HOH HOH . K 4 HOH B 17 417 403 HOH HOH . K 4 HOH B 18 418 433 HOH HOH . K 4 HOH B 19 419 404 HOH HOH . K 4 HOH B 20 420 419 HOH HOH . K 4 HOH B 21 421 421 HOH HOH . K 4 HOH B 22 422 426 HOH HOH . K 4 HOH B 23 423 414 HOH HOH . K 4 HOH B 24 424 437 HOH HOH . K 4 HOH B 25 425 432 HOH HOH . K 4 HOH B 26 426 416 HOH HOH . K 4 HOH B 27 427 420 HOH HOH . K 4 HOH B 28 428 408 HOH HOH . K 4 HOH B 29 429 425 HOH HOH . K 4 HOH B 30 430 429 HOH HOH . K 4 HOH B 31 431 446 HOH HOH . K 4 HOH B 32 432 409 HOH HOH . K 4 HOH B 33 433 444 HOH HOH . K 4 HOH B 34 434 443 HOH HOH . K 4 HOH B 35 435 410 HOH HOH . K 4 HOH B 36 436 430 HOH HOH . K 4 HOH B 37 437 427 HOH HOH . K 4 HOH B 38 438 422 HOH HOH . K 4 HOH B 39 439 445 HOH HOH . K 4 HOH B 40 440 431 HOH HOH . K 4 HOH B 41 441 423 HOH HOH . K 4 HOH B 42 442 424 HOH HOH . K 4 HOH B 43 443 441 HOH HOH . K 4 HOH B 44 444 442 HOH HOH . K 4 HOH B 45 445 411 HOH HOH . K 4 HOH B 46 446 438 HOH HOH . L 4 HOH C 1 401 401 HOH HOH . L 4 HOH C 2 402 438 HOH HOH . L 4 HOH C 3 403 402 HOH HOH . L 4 HOH C 4 404 444 HOH HOH . L 4 HOH C 5 405 441 HOH HOH . L 4 HOH C 6 406 404 HOH HOH . L 4 HOH C 7 407 403 HOH HOH . L 4 HOH C 8 408 419 HOH HOH . L 4 HOH C 9 409 424 HOH HOH . L 4 HOH C 10 410 439 HOH HOH . L 4 HOH C 11 411 442 HOH HOH . L 4 HOH C 12 412 435 HOH HOH . L 4 HOH C 13 413 423 HOH HOH . L 4 HOH C 14 414 446 HOH HOH . L 4 HOH C 15 415 421 HOH HOH . L 4 HOH C 16 416 415 HOH HOH . L 4 HOH C 17 417 420 HOH HOH . L 4 HOH C 18 418 426 HOH HOH . L 4 HOH C 19 419 416 HOH HOH . L 4 HOH C 20 420 447 HOH HOH . L 4 HOH C 21 421 449 HOH HOH . L 4 HOH C 22 422 406 HOH HOH . L 4 HOH C 23 423 437 HOH HOH . L 4 HOH C 24 424 418 HOH HOH . L 4 HOH C 25 425 405 HOH HOH . L 4 HOH C 26 426 422 HOH HOH . L 4 HOH C 27 427 440 HOH HOH . L 4 HOH C 28 428 417 HOH HOH . L 4 HOH C 29 429 451 HOH HOH . L 4 HOH C 30 430 432 HOH HOH . L 4 HOH C 31 431 429 HOH HOH . L 4 HOH C 32 432 434 HOH HOH . L 4 HOH C 33 433 427 HOH HOH . L 4 HOH C 34 434 428 HOH HOH . L 4 HOH C 35 435 450 HOH HOH . L 4 HOH C 36 436 425 HOH HOH . L 4 HOH C 37 437 408 HOH HOH . L 4 HOH C 38 438 407 HOH HOH . L 4 HOH C 39 439 452 HOH HOH . L 4 HOH C 40 440 431 HOH HOH . L 4 HOH C 41 441 409 HOH HOH . L 4 HOH C 42 442 410 HOH HOH . L 4 HOH C 43 443 448 HOH HOH . L 4 HOH C 44 444 411 HOH HOH . L 4 HOH C 45 445 445 HOH HOH . L 4 HOH C 46 446 412 HOH HOH . L 4 HOH C 47 447 413 HOH HOH . L 4 HOH C 48 448 414 HOH HOH . L 4 HOH C 49 449 430 HOH HOH . L 4 HOH C 50 450 433 HOH HOH . L 4 HOH C 51 451 436 HOH HOH . L 4 HOH C 52 452 443 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . E 3 -3.171 -16.619 35.32 1 61.47 ? O1 MES 302 A 1 HETATM 2 C C2 MES . . . E 3 -3.306 -16.078 34.003 1 61.33 ? C2 MES 302 A 1 HETATM 3 C C3 MES . . . E 3 -1.969 -15.982 33.306 1 61.26 ? C3 MES 302 A 1 HETATM 4 N N4 MES . . . E 3 -1.024 -15.152 34.122 1 60.81 ? N4 MES 302 A 1 HETATM 5 C C5 MES . . . E 3 -0.932 -15.693 35.514 1 59.03 ? C5 MES 302 A 1 HETATM 6 C C6 MES . . . E 3 -2.313 -15.795 36.117 1 60.08 ? C6 MES 302 A 1 HETATM 7 C C7 MES . . . E 3 0.319 -14.986 33.468 1 60.54 ? C7 MES 302 A 1 HETATM 8 C C8 MES . . . E 3 0.401 -13.602 32.845 1 59.02 ? C8 MES 302 A 1 HETATM 9 S S MES . . . E 3 1.754 -13.352 31.72 1 56.14 ? S MES 302 A 1 HETATM 10 O O1S MES . . . E 3 2.5 -14.598 31.694 1 57.48 ? O1S MES 302 A 1 HETATM 11 O O2S MES . . . E 3 1.157 -13.028 30.437 1 55.73 ? O2S MES 302 A 1 HETATM 12 O O3S MES . . . E 3 2.528 -12.251 32.261 1 57.49 ? O3S MES 302 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #