data_4YQP # _model_server_result.job_id N1Y6-A24_IieEY-13RfD8g _model_server_result.datetime_utc '2024-10-19 09:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQP # _exptl.entry_id 4YQP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 312.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[2-(morpholin-4-yl)benzyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQP _cell.length_a 94.775 _cell.length_b 94.775 _cell.length_c 178.306 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQP _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H20 N4 O2' _chem_comp.formula_weight 312.366 _chem_comp.id 4H6 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[2-(morpholin-4-yl)benzyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 4H6 doub 1 n y C13 C12 4H6 sing 2 n y C14 C15 4H6 sing 3 n y C12 C11 4H6 doub 4 n y C17 N16 4H6 sing 5 n n C17 C18 4H6 sing 6 n n C15 C10 4H6 doub 7 n y C15 N16 4H6 sing 8 n n C11 C10 4H6 sing 9 n y C21 N16 4H6 sing 10 n n C21 C20 4H6 sing 11 n n C10 C9 4H6 sing 12 n n C18 O19 4H6 sing 13 n n O19 C20 4H6 sing 14 n n C9 N8 4H6 sing 15 n n N8 C7 4H6 sing 16 n n C6 C7 4H6 doub 17 n y C6 C5 4H6 sing 18 n y C7 N22 4H6 sing 19 n y C5 C4 4H6 doub 20 n y N22 C23 4H6 doub 21 n y C4 C23 4H6 sing 22 n y C4 C2 4H6 sing 23 n n O3 C2 4H6 doub 24 n n C2 N1 4H6 sing 25 n n C12 H1 4H6 sing 26 n n C13 H2 4H6 sing 27 n n C5 H3 4H6 sing 28 n n C11 H4 4H6 sing 29 n n C14 H5 4H6 sing 30 n n C6 H6 4H6 sing 31 n n C23 H7 4H6 sing 32 n n C17 H8 4H6 sing 33 n n C17 H9 4H6 sing 34 n n C21 H10 4H6 sing 35 n n C21 H11 4H6 sing 36 n n C18 H12 4H6 sing 37 n n C18 H13 4H6 sing 38 n n C20 H14 4H6 sing 39 n n C20 H15 4H6 sing 40 n n C9 H16 4H6 sing 41 n n C9 H17 4H6 sing 42 n n N1 H18 4H6 sing 43 n n N1 H19 4H6 sing 44 n n N8 H20 4H6 sing 45 n n # _atom_sites.entry_id 4YQP _atom_sites.fract_transf_matrix[1][1] 0.010551 _atom_sites.fract_transf_matrix[1][2] 0.006092 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012184 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4H6 A 1 301 1 4H6 UNL . C 3 HOH A 1 401 25 HOH HOH . C 3 HOH A 2 402 39 HOH HOH . C 3 HOH A 3 403 4 HOH HOH . C 3 HOH A 4 404 41 HOH HOH . C 3 HOH A 5 405 1 HOH HOH . C 3 HOH A 6 406 33 HOH HOH . C 3 HOH A 7 407 10 HOH HOH . C 3 HOH A 8 408 27 HOH HOH . C 3 HOH A 9 409 3 HOH HOH . C 3 HOH A 10 410 21 HOH HOH . C 3 HOH A 11 411 48 HOH HOH . C 3 HOH A 12 412 38 HOH HOH . C 3 HOH A 13 413 26 HOH HOH . C 3 HOH A 14 414 42 HOH HOH . C 3 HOH A 15 415 20 HOH HOH . C 3 HOH A 16 416 34 HOH HOH . C 3 HOH A 17 417 29 HOH HOH . C 3 HOH A 18 418 36 HOH HOH . C 3 HOH A 19 419 22 HOH HOH . C 3 HOH A 20 420 7 HOH HOH . C 3 HOH A 21 421 31 HOH HOH . C 3 HOH A 22 422 8 HOH HOH . C 3 HOH A 23 423 43 HOH HOH . C 3 HOH A 24 424 2 HOH HOH . C 3 HOH A 25 425 5 HOH HOH . C 3 HOH A 26 426 6 HOH HOH . C 3 HOH A 27 427 9 HOH HOH . C 3 HOH A 28 428 11 HOH HOH . C 3 HOH A 29 429 12 HOH HOH . C 3 HOH A 30 430 13 HOH HOH . C 3 HOH A 31 431 14 HOH HOH . C 3 HOH A 32 432 16 HOH HOH . C 3 HOH A 33 433 17 HOH HOH . C 3 HOH A 34 434 18 HOH HOH . C 3 HOH A 35 435 19 HOH HOH . C 3 HOH A 36 436 23 HOH HOH . C 3 HOH A 37 437 28 HOH HOH . C 3 HOH A 38 438 35 HOH HOH . C 3 HOH A 39 439 45 HOH HOH . C 3 HOH A 40 440 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 4H6 . . . B 2 -20.357 41.327 -13.337 1 22.21 ? C12 4H6 301 A 1 HETATM 2 C C13 4H6 . . . B 2 -19.591 42.328 -13.87 1 21.5 ? C13 4H6 301 A 1 HETATM 3 C C5 4H6 . . . B 2 -21.362 40.861 -8.402 1 17.74 ? C5 4H6 301 A 1 HETATM 4 C C11 4H6 . . . B 2 -19.891 40.594 -12.28 1 19.72 ? C11 4H6 301 A 1 HETATM 5 C C14 4H6 . . . B 2 -18.355 42.586 -13.346 1 24.88 ? C14 4H6 301 A 1 HETATM 6 C C6 4H6 . . . B 2 -20.205 40.561 -9.072 1 21.83 ? C6 4H6 301 A 1 HETATM 7 C C23 4H6 . . . B 2 -20.105 42.47 -7.216 1 19.83 ? C23 4H6 301 A 1 HETATM 8 C C4 4H6 . . . B 2 -21.292 41.843 -7.455 1 19.66 ? C4 4H6 301 A 1 HETATM 9 C C10 4H6 . . . B 2 -18.656 40.859 -11.751 1 27.27 ? C10 4H6 301 A 1 HETATM 10 C C15 4H6 . . . B 2 -17.882 41.856 -12.288 1 20.85 ? C15 4H6 301 A 1 HETATM 11 C C7 4H6 . . . B 2 -19.039 41.231 -8.779 1 23.69 ? C7 4H6 301 A 1 HETATM 12 C C2 4H6 . . . B 2 -22.465 42.233 -6.693 1 20.43 ? C2 4H6 301 A 1 HETATM 13 C C17 4H6 . . . B 2 -15.619 41.303 -12.342 1 21.32 ? C17 4H6 301 A 1 HETATM 14 C C21 4H6 . . . B 2 -16.312 43.509 -11.762 1 22.79 ? C21 4H6 301 A 1 HETATM 15 C C18 4H6 . . . B 2 -14.44 41.456 -11.419 1 19.35 ? C18 4H6 301 A 1 HETATM 16 C C20 4H6 . . . B 2 -15.093 43.648 -10.883 1 20.31 ? C20 4H6 301 A 1 HETATM 17 C C9 4H6 . . . B 2 -18.169 40.056 -10.599 1 19.67 ? C9 4H6 301 A 1 HETATM 18 N N22 4H6 . . . B 2 -18.98 42.186 -7.856 1 21.13 ? N22 4H6 301 A 1 HETATM 19 N N16 4H6 . . . B 2 -16.637 42.114 -11.747 1 21.82 ? N16 4H6 301 A 1 HETATM 20 N N1 4H6 . . . B 2 -22.256 43.338 -5.946 1 24.47 ? N1 4H6 301 A 1 HETATM 21 N N8 4H6 . . . B 2 -17.869 40.909 -9.475 1 19.28 ? N8 4H6 301 A 1 HETATM 22 O O3 4H6 . . . B 2 -23.496 41.605 -6.759 1 17.73 ? O3 4H6 301 A 1 HETATM 23 O O19 4H6 . . . B 2 -14.041 42.813 -11.337 1 22.39 ? O19 4H6 301 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #