data_4YQQ # _model_server_result.job_id aqBLYT9HVmajcL5tsNhGXQ _model_server_result.datetime_utc '2024-10-19 08:24:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQQ # _exptl.entry_id 4YQQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.408 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[2-(4-methylpiperazin-1-yl)benzyl]amino}pyridine-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQQ _cell.length_a 94.39 _cell.length_b 94.39 _cell.length_c 178.917 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H23 N5 O' _chem_comp.formula_weight 325.408 _chem_comp.id 4H7 _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[2-(4-methylpiperazin-1-yl)benzyl]amino}pyridine-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C6 4H7 doub 1 n y C7 C8 4H7 sing 2 n y C6 C5 4H7 sing 3 n y C8 C9 4H7 doub 4 n y C2 N1 4H7 sing 5 n n C2 C1 4H7 sing 6 n n C5 N1 4H7 sing 7 n n C5 C10 4H7 doub 8 n y C9 C10 4H7 sing 9 n y N1 C3 4H7 sing 10 n n C1 N 4H7 sing 11 n n N C 4H7 sing 12 n n N C4 4H7 sing 13 n n C10 C11 4H7 sing 14 n n C3 C4 4H7 sing 15 n n C11 N2 4H7 sing 16 n n N2 C12 4H7 sing 17 n n C13 C12 4H7 doub 18 n y C13 C14 4H7 sing 19 n y C12 N3 4H7 sing 20 n y C14 C15 4H7 doub 21 n y N3 C16 4H7 doub 22 n y C15 C16 4H7 sing 23 n y C15 C17 4H7 sing 24 n n C17 O 4H7 doub 25 n n C17 N4 4H7 sing 26 n n C8 H13 4H7 sing 27 n n C7 H12 4H7 sing 28 n n C14 H19 4H7 sing 29 n n C9 H14 4H7 sing 30 n n C6 H11 4H7 sing 31 n n C13 H18 4H7 sing 32 n n C16 H20 4H7 sing 33 n n C2 H6 4H7 sing 34 n n C2 H5 4H7 sing 35 n n C3 H8 4H7 sing 36 n n C3 H7 4H7 sing 37 n n C1 H4 4H7 sing 38 n n C1 H3 4H7 sing 39 n n C4 H10 4H7 sing 40 n n C4 H9 4H7 sing 41 n n C H1 4H7 sing 42 n n C H 4H7 sing 43 n n C H2 4H7 sing 44 n n C11 H15 4H7 sing 45 n n C11 H16 4H7 sing 46 n n N4 H21 4H7 sing 47 n n N4 H22 4H7 sing 48 n n N2 H17 4H7 sing 49 n n # _atom_sites.entry_id 4YQQ _atom_sites.fract_transf_matrix[1][1] 0.010594 _atom_sites.fract_transf_matrix[1][2] 0.006117 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005589 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4H7 A 1 301 1 4H7 UNL . C 3 HOH A 1 401 169 HOH HOH . C 3 HOH A 2 402 130 HOH HOH . C 3 HOH A 3 403 146 HOH HOH . C 3 HOH A 4 404 92 HOH HOH . C 3 HOH A 5 405 86 HOH HOH . C 3 HOH A 6 406 159 HOH HOH . C 3 HOH A 7 407 44 HOH HOH . C 3 HOH A 8 408 117 HOH HOH . C 3 HOH A 9 409 49 HOH HOH . C 3 HOH A 10 410 147 HOH HOH . C 3 HOH A 11 411 109 HOH HOH . C 3 HOH A 12 412 115 HOH HOH . C 3 HOH A 13 413 154 HOH HOH . C 3 HOH A 14 414 54 HOH HOH . C 3 HOH A 15 415 61 HOH HOH . C 3 HOH A 16 416 126 HOH HOH . C 3 HOH A 17 417 120 HOH HOH . C 3 HOH A 18 418 67 HOH HOH . C 3 HOH A 19 419 84 HOH HOH . C 3 HOH A 20 420 62 HOH HOH . C 3 HOH A 21 421 20 HOH HOH . C 3 HOH A 22 422 148 HOH HOH . C 3 HOH A 23 423 141 HOH HOH . C 3 HOH A 24 424 104 HOH HOH . C 3 HOH A 25 425 11 HOH HOH . C 3 HOH A 26 426 33 HOH HOH . C 3 HOH A 27 427 46 HOH HOH . C 3 HOH A 28 428 3 HOH HOH . C 3 HOH A 29 429 32 HOH HOH . C 3 HOH A 30 430 36 HOH HOH . C 3 HOH A 31 431 56 HOH HOH . C 3 HOH A 32 432 142 HOH HOH . C 3 HOH A 33 433 28 HOH HOH . C 3 HOH A 34 434 133 HOH HOH . C 3 HOH A 35 435 156 HOH HOH . C 3 HOH A 36 436 19 HOH HOH . C 3 HOH A 37 437 114 HOH HOH . C 3 HOH A 38 438 110 HOH HOH . C 3 HOH A 39 439 57 HOH HOH . C 3 HOH A 40 440 4 HOH HOH . C 3 HOH A 41 441 167 HOH HOH . C 3 HOH A 42 442 145 HOH HOH . C 3 HOH A 43 443 111 HOH HOH . C 3 HOH A 44 444 17 HOH HOH . C 3 HOH A 45 445 40 HOH HOH . C 3 HOH A 46 446 5 HOH HOH . C 3 HOH A 47 447 8 HOH HOH . C 3 HOH A 48 448 1 HOH HOH . C 3 HOH A 49 449 14 HOH HOH . C 3 HOH A 50 450 103 HOH HOH . C 3 HOH A 51 451 47 HOH HOH . C 3 HOH A 52 452 78 HOH HOH . C 3 HOH A 53 453 37 HOH HOH . C 3 HOH A 54 454 136 HOH HOH . C 3 HOH A 55 455 85 HOH HOH . C 3 HOH A 56 456 101 HOH HOH . C 3 HOH A 57 457 137 HOH HOH . C 3 HOH A 58 458 72 HOH HOH . C 3 HOH A 59 459 83 HOH HOH . C 3 HOH A 60 460 23 HOH HOH . C 3 HOH A 61 461 12 HOH HOH . C 3 HOH A 62 462 127 HOH HOH . C 3 HOH A 63 463 13 HOH HOH . C 3 HOH A 64 464 15 HOH HOH . C 3 HOH A 65 465 65 HOH HOH . C 3 HOH A 66 466 105 HOH HOH . C 3 HOH A 67 467 131 HOH HOH . C 3 HOH A 68 468 150 HOH HOH . C 3 HOH A 69 469 93 HOH HOH . C 3 HOH A 70 470 121 HOH HOH . C 3 HOH A 71 471 144 HOH HOH . C 3 HOH A 72 472 95 HOH HOH . C 3 HOH A 73 473 140 HOH HOH . C 3 HOH A 74 474 39 HOH HOH . C 3 HOH A 75 475 139 HOH HOH . C 3 HOH A 76 476 164 HOH HOH . C 3 HOH A 77 477 112 HOH HOH . C 3 HOH A 78 478 96 HOH HOH . C 3 HOH A 79 479 55 HOH HOH . C 3 HOH A 80 480 143 HOH HOH . C 3 HOH A 81 481 60 HOH HOH . C 3 HOH A 82 482 171 HOH HOH . C 3 HOH A 83 483 172 HOH HOH . C 3 HOH A 84 484 34 HOH HOH . C 3 HOH A 85 485 134 HOH HOH . C 3 HOH A 86 486 64 HOH HOH . C 3 HOH A 87 487 122 HOH HOH . C 3 HOH A 88 488 59 HOH HOH . C 3 HOH A 89 489 124 HOH HOH . C 3 HOH A 90 490 68 HOH HOH . C 3 HOH A 91 491 132 HOH HOH . C 3 HOH A 92 492 125 HOH HOH . C 3 HOH A 93 493 50 HOH HOH . C 3 HOH A 94 494 135 HOH HOH . C 3 HOH A 95 495 129 HOH HOH . C 3 HOH A 96 496 149 HOH HOH . C 3 HOH A 97 497 2 HOH HOH . C 3 HOH A 98 498 6 HOH HOH . C 3 HOH A 99 499 7 HOH HOH . C 3 HOH A 100 500 9 HOH HOH . C 3 HOH A 101 501 10 HOH HOH . C 3 HOH A 102 502 16 HOH HOH . C 3 HOH A 103 503 18 HOH HOH . C 3 HOH A 104 504 21 HOH HOH . C 3 HOH A 105 505 22 HOH HOH . C 3 HOH A 106 506 24 HOH HOH . C 3 HOH A 107 507 25 HOH HOH . C 3 HOH A 108 508 26 HOH HOH . C 3 HOH A 109 509 27 HOH HOH . C 3 HOH A 110 510 29 HOH HOH . C 3 HOH A 111 511 30 HOH HOH . C 3 HOH A 112 512 31 HOH HOH . C 3 HOH A 113 513 35 HOH HOH . C 3 HOH A 114 514 38 HOH HOH . C 3 HOH A 115 515 41 HOH HOH . C 3 HOH A 116 516 42 HOH HOH . C 3 HOH A 117 517 43 HOH HOH . C 3 HOH A 118 518 45 HOH HOH . C 3 HOH A 119 519 48 HOH HOH . C 3 HOH A 120 520 51 HOH HOH . C 3 HOH A 121 521 52 HOH HOH . C 3 HOH A 122 522 53 HOH HOH . C 3 HOH A 123 523 58 HOH HOH . C 3 HOH A 124 524 63 HOH HOH . C 3 HOH A 125 525 66 HOH HOH . C 3 HOH A 126 526 69 HOH HOH . C 3 HOH A 127 527 70 HOH HOH . C 3 HOH A 128 528 71 HOH HOH . C 3 HOH A 129 529 73 HOH HOH . C 3 HOH A 130 530 74 HOH HOH . C 3 HOH A 131 531 75 HOH HOH . C 3 HOH A 132 532 76 HOH HOH . C 3 HOH A 133 533 77 HOH HOH . C 3 HOH A 134 534 79 HOH HOH . C 3 HOH A 135 535 80 HOH HOH . C 3 HOH A 136 536 81 HOH HOH . C 3 HOH A 137 537 82 HOH HOH . C 3 HOH A 138 538 87 HOH HOH . C 3 HOH A 139 539 88 HOH HOH . C 3 HOH A 140 540 89 HOH HOH . C 3 HOH A 141 541 90 HOH HOH . C 3 HOH A 142 542 91 HOH HOH . C 3 HOH A 143 543 94 HOH HOH . C 3 HOH A 144 544 97 HOH HOH . C 3 HOH A 145 545 98 HOH HOH . C 3 HOH A 146 546 99 HOH HOH . C 3 HOH A 147 547 100 HOH HOH . C 3 HOH A 148 548 102 HOH HOH . C 3 HOH A 149 549 106 HOH HOH . C 3 HOH A 150 550 107 HOH HOH . C 3 HOH A 151 551 108 HOH HOH . C 3 HOH A 152 552 113 HOH HOH . C 3 HOH A 153 553 116 HOH HOH . C 3 HOH A 154 554 118 HOH HOH . C 3 HOH A 155 555 119 HOH HOH . C 3 HOH A 156 556 123 HOH HOH . C 3 HOH A 157 557 128 HOH HOH . C 3 HOH A 158 558 138 HOH HOH . C 3 HOH A 159 559 151 HOH HOH . C 3 HOH A 160 560 152 HOH HOH . C 3 HOH A 161 561 153 HOH HOH . C 3 HOH A 162 562 155 HOH HOH . C 3 HOH A 163 563 157 HOH HOH . C 3 HOH A 164 564 158 HOH HOH . C 3 HOH A 165 565 160 HOH HOH . C 3 HOH A 166 566 161 HOH HOH . C 3 HOH A 167 567 162 HOH HOH . C 3 HOH A 168 568 163 HOH HOH . C 3 HOH A 169 569 165 HOH HOH . C 3 HOH A 170 570 166 HOH HOH . C 3 HOH A 171 571 168 HOH HOH . C 3 HOH A 172 572 170 HOH HOH . C 3 HOH A 173 573 173 HOH HOH . C 3 HOH A 174 574 174 HOH HOH . C 3 HOH A 175 575 175 HOH HOH . C 3 HOH A 176 576 176 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 4H7 . . . B 2 -20.488 40.646 -13.243 1 25.11 ? C8 4H7 301 A 1 HETATM 2 C C7 4H7 . . . B 2 -20.218 41.877 -13.835 1 27.83 ? C7 4H7 301 A 1 HETATM 3 C C14 4H7 . . . B 2 -21.291 41.165 -8.333 1 17.03 ? C14 4H7 301 A 1 HETATM 4 C C9 4H7 . . . B 2 -19.659 40.159 -12.247 1 24.36 ? C9 4H7 301 A 1 HETATM 5 C C6 4H7 . . . B 2 -19.116 42.609 -13.437 1 21.14 ? C6 4H7 301 A 1 HETATM 6 C C13 4H7 . . . B 2 -20.186 40.784 -9.067 1 19.28 ? C13 4H7 301 A 1 HETATM 7 C C16 4H7 . . . B 2 -19.893 42.77 -7.18 1 20.33 ? C16 4H7 301 A 1 HETATM 8 C C15 4H7 . . . B 2 -21.152 42.183 -7.376 1 20.04 ? C15 4H7 301 A 1 HETATM 9 C C10 4H7 . . . B 2 -18.541 40.885 -11.817 1 22.25 ? C10 4H7 301 A 1 HETATM 10 C C5 4H7 . . . B 2 -18.265 42.118 -12.437 1 22.48 ? C5 4H7 301 A 1 HETATM 11 C C12 4H7 . . . B 2 -18.937 41.45 -8.818 1 19.37 ? C12 4H7 301 A 1 HETATM 12 C C17 4H7 . . . B 2 -22.332 42.611 -6.616 1 25.79 ? C17 4H7 301 A 1 HETATM 13 C C2 4H7 . . . B 2 -15.839 42.52 -12.745 1 41.99 ? C2 4H7 301 A 1 HETATM 14 C C3 4H7 . . . B 2 -17.344 44.24 -11.554 1 28.04 ? C3 4H7 301 A 1 HETATM 15 C C1 4H7 . . . B 2 -14.668 43.264 -12.138 1 47 ? C1 4H7 301 A 1 HETATM 16 C C4 4H7 . . . B 2 -16.061 44.819 -11.011 1 32.82 ? C4 4H7 301 A 1 HETATM 17 C C 4H7 . . . B 2 -13.798 45.427 -11.542 1 42.01 ? C 4H7 301 A 1 HETATM 18 C C11 4H7 . . . B 2 -17.731 40.313 -10.682 1 23.34 ? C11 4H7 301 A 1 HETATM 19 N N3 4H7 . . . B 2 -18.786 42.439 -7.857 1 18.01 ? N3 4H7 301 A 1 HETATM 20 N N1 4H7 . . . B 2 -17.145 42.923 -12.193 1 30.09 ? N1 4H7 301 A 1 HETATM 21 N N 4H7 . . . B 2 -14.98 44.678 -11.975 1 42.4 ? N 4H7 301 A 1 HETATM 22 N N4 4H7 . . . B 2 -22.223 43.811 -5.945 1 24.47 ? N4 4H7 301 A 1 HETATM 23 N N2 4H7 . . . B 2 -17.792 41.231 -9.535 1 19.95 ? N2 4H7 301 A 1 HETATM 24 O O 4H7 . . . B 2 -23.382 41.957 -6.562 1 21.64 ? O 4H7 301 A 1 HETATM 25 H H13 4H7 . . . B 2 -21.351 40.065 -13.564 1 30.13 ? H13 4H7 301 A 1 HETATM 26 H H12 4H7 . . . B 2 -20.876 42.263 -14.612 1 33.4 ? H12 4H7 301 A 1 HETATM 27 H H19 4H7 . . . B 2 -22.256 40.686 -8.492 1 20.44 ? H19 4H7 301 A 1 HETATM 28 H H14 4H7 . . . B 2 -19.886 39.195 -11.794 1 29.23 ? H14 4H7 301 A 1 HETATM 29 H H11 4H7 . . . B 2 -18.908 43.571 -13.904 1 25.36 ? H11 4H7 301 A 1 HETATM 30 H H18 4H7 . . . B 2 -20.289 39.995 -9.811 1 23.14 ? H18 4H7 301 A 1 HETATM 31 H H20 4H7 . . . B 2 -19.733 43.554 -6.441 1 24.39 ? H20 4H7 301 A 1 HETATM 32 H H6 4H7 . . . B 2 -15.848 42.672 -13.823 1 50.39 ? H6 4H7 301 A 1 HETATM 33 H H5 4H7 . . . B 2 -15.704 41.443 -12.65 1 50.39 ? H5 4H7 301 A 1 HETATM 34 H H8 4H7 . . . B 2 -17.784 44.922 -12.281 1 33.65 ? H8 4H7 301 A 1 HETATM 35 H H7 4H7 . . . B 2 -18.106 44.178 -10.779 1 33.65 ? H7 4H7 301 A 1 HETATM 36 H H4 4H7 . . . B 2 -13.752 43.047 -12.687 1 56.4 ? H4 4H7 301 A 1 HETATM 37 H H3 4H7 . . . B 2 -14.472 42.882 -11.137 1 56.4 ? H3 4H7 301 A 1 HETATM 38 H H10 4H7 . . . B 2 -16.22 45.856 -10.717 1 39.39 ? H10 4H7 301 A 1 HETATM 39 H H9 4H7 . . . B 2 -15.746 44.344 -10.083 1 39.39 ? H9 4H7 301 A 1 HETATM 40 H H1 4H7 . . . B 2 -12.988 45.306 -12.26 1 50.41 ? H1 4H7 301 A 1 HETATM 41 H H 4H7 . . . B 2 -14.038 46.489 -11.524 1 50.41 ? H 4H7 301 A 1 HETATM 42 H H2 4H7 . . . B 2 -13.393 45.181 -10.562 1 50.41 ? H2 4H7 301 A 1 HETATM 43 H H15 4H7 . . . B 2 -16.699 40.138 -10.984 1 28 ? H15 4H7 301 A 1 HETATM 44 H H16 4H7 . . . B 2 -18.117 39.334 -10.402 1 28 ? H16 4H7 301 A 1 HETATM 45 H H21 4H7 . . . B 2 -21.366 44.353 -5.988 1 29.37 ? H21 4H7 301 A 1 HETATM 46 H H22 4H7 . . . B 2 -22.981 44.197 -5.391 1 29.37 ? H22 4H7 301 A 1 HETATM 47 H H17 4H7 . . . B 2 -16.945 41.723 -9.268 1 23.93 ? H17 4H7 301 A 1 # _model_server_stats.io_time_ms 49 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #