data_4YQT # _model_server_result.job_id JuVgyE1TGxQaG4XHlWQxOg _model_server_result.datetime_utc '2024-12-06 07:34:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YQT # _exptl.entry_id 4YQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 223.275 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-2-[(2,2-dimethylpropyl)amino]pyrimidine-5-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YQT _cell.length_a 93.848 _cell.length_b 93.848 _cell.length_c 178.068 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N5 O' _chem_comp.formula_weight 223.275 _chem_comp.id 4H8 _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-2-[(2,2-dimethylpropyl)amino]pyrimidine-5-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 4H8 sing 1 n n C3 C2 4H8 sing 2 n n C4 C2 4H8 sing 3 n n C2 C5 4H8 sing 4 n n C5 N6 4H8 sing 5 n n N6 C7 4H8 sing 6 n n N16 C7 4H8 doub 7 n y N16 C14 4H8 sing 8 n y C7 N8 4H8 sing 9 n y N15 C14 4H8 sing 10 n n C14 C10 4H8 doub 11 n y N8 C9 4H8 doub 12 n y C10 C9 4H8 sing 13 n y C10 C11 4H8 sing 14 n n O13 C11 4H8 doub 15 n n C11 N12 4H8 sing 16 n n C4 H1 4H8 sing 17 n n C4 H2 4H8 sing 18 n n C4 H3 4H8 sing 19 n n C5 H4 4H8 sing 20 n n C5 H5 4H8 sing 21 n n N12 H6 4H8 sing 22 n n N12 H7 4H8 sing 23 n n C9 H8 4H8 sing 24 n n C1 H9 4H8 sing 25 n n C1 H10 4H8 sing 26 n n C1 H11 4H8 sing 27 n n C3 H12 4H8 sing 28 n n C3 H13 4H8 sing 29 n n C3 H14 4H8 sing 30 n n N15 H15 4H8 sing 31 n n N15 H16 4H8 sing 32 n n N6 H17 4H8 sing 33 n n # _atom_sites.entry_id 4YQT _atom_sites.fract_transf_matrix[1][1] 0.010656 _atom_sites.fract_transf_matrix[1][2] 0.006152 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005616 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4H8 A 1 301 1 4H8 LIG . C 3 HOH A 1 401 46 HOH HOH . C 3 HOH A 2 402 182 HOH HOH . C 3 HOH A 3 403 52 HOH HOH . C 3 HOH A 4 404 258 HOH HOH . C 3 HOH A 5 405 236 HOH HOH . C 3 HOH A 6 406 78 HOH HOH . C 3 HOH A 7 407 35 HOH HOH . C 3 HOH A 8 408 101 HOH HOH . C 3 HOH A 9 409 135 HOH HOH . C 3 HOH A 10 410 210 HOH HOH . C 3 HOH A 11 411 19 HOH HOH . C 3 HOH A 12 412 251 HOH HOH . C 3 HOH A 13 413 88 HOH HOH . C 3 HOH A 14 414 119 HOH HOH . C 3 HOH A 15 415 125 HOH HOH . C 3 HOH A 16 416 157 HOH HOH . C 3 HOH A 17 417 185 HOH HOH . C 3 HOH A 18 418 152 HOH HOH . C 3 HOH A 19 419 85 HOH HOH . C 3 HOH A 20 420 291 HOH HOH . C 3 HOH A 21 421 79 HOH HOH . C 3 HOH A 22 422 68 HOH HOH . C 3 HOH A 23 423 33 HOH HOH . C 3 HOH A 24 424 60 HOH HOH . C 3 HOH A 25 425 9 HOH HOH . C 3 HOH A 26 426 141 HOH HOH . C 3 HOH A 27 427 176 HOH HOH . C 3 HOH A 28 428 5 HOH HOH . C 3 HOH A 29 429 288 HOH HOH . C 3 HOH A 30 430 252 HOH HOH . C 3 HOH A 31 431 56 HOH HOH . C 3 HOH A 32 432 3 HOH HOH . C 3 HOH A 33 433 41 HOH HOH . C 3 HOH A 34 434 50 HOH HOH . C 3 HOH A 35 435 62 HOH HOH . C 3 HOH A 36 436 47 HOH HOH . C 3 HOH A 37 437 114 HOH HOH . C 3 HOH A 38 438 7 HOH HOH . C 3 HOH A 39 439 96 HOH HOH . C 3 HOH A 40 440 70 HOH HOH . C 3 HOH A 41 441 110 HOH HOH . C 3 HOH A 42 442 61 HOH HOH . C 3 HOH A 43 443 146 HOH HOH . C 3 HOH A 44 444 172 HOH HOH . C 3 HOH A 45 445 58 HOH HOH . C 3 HOH A 46 446 107 HOH HOH . C 3 HOH A 47 447 13 HOH HOH . C 3 HOH A 48 448 21 HOH HOH . C 3 HOH A 49 449 51 HOH HOH . C 3 HOH A 50 450 49 HOH HOH . C 3 HOH A 51 451 151 HOH HOH . C 3 HOH A 52 452 234 HOH HOH . C 3 HOH A 53 453 27 HOH HOH . C 3 HOH A 54 454 249 HOH HOH . C 3 HOH A 55 455 18 HOH HOH . C 3 HOH A 56 456 167 HOH HOH . C 3 HOH A 57 457 95 HOH HOH . C 3 HOH A 58 458 134 HOH HOH . C 3 HOH A 59 459 22 HOH HOH . C 3 HOH A 60 460 11 HOH HOH . C 3 HOH A 61 461 278 HOH HOH . C 3 HOH A 62 462 43 HOH HOH . C 3 HOH A 63 463 8 HOH HOH . C 3 HOH A 64 464 137 HOH HOH . C 3 HOH A 65 465 57 HOH HOH . C 3 HOH A 66 466 133 HOH HOH . C 3 HOH A 67 467 16 HOH HOH . C 3 HOH A 68 468 87 HOH HOH . C 3 HOH A 69 469 276 HOH HOH . C 3 HOH A 70 470 23 HOH HOH . C 3 HOH A 71 471 25 HOH HOH . C 3 HOH A 72 472 109 HOH HOH . C 3 HOH A 73 473 102 HOH HOH . C 3 HOH A 74 474 224 HOH HOH . C 3 HOH A 75 475 90 HOH HOH . C 3 HOH A 76 476 28 HOH HOH . C 3 HOH A 77 477 48 HOH HOH . C 3 HOH A 78 478 40 HOH HOH . C 3 HOH A 79 479 111 HOH HOH . C 3 HOH A 80 480 142 HOH HOH . C 3 HOH A 81 481 63 HOH HOH . C 3 HOH A 82 482 148 HOH HOH . C 3 HOH A 83 483 140 HOH HOH . C 3 HOH A 84 484 124 HOH HOH . C 3 HOH A 85 485 98 HOH HOH . C 3 HOH A 86 486 91 HOH HOH . C 3 HOH A 87 487 265 HOH HOH . C 3 HOH A 88 488 248 HOH HOH . C 3 HOH A 89 489 255 HOH HOH . C 3 HOH A 90 490 282 HOH HOH . C 3 HOH A 91 491 165 HOH HOH . C 3 HOH A 92 492 103 HOH HOH . C 3 HOH A 93 493 253 HOH HOH . C 3 HOH A 94 494 82 HOH HOH . C 3 HOH A 95 495 112 HOH HOH . C 3 HOH A 96 496 264 HOH HOH . C 3 HOH A 97 497 230 HOH HOH . C 3 HOH A 98 498 284 HOH HOH . C 3 HOH A 99 499 263 HOH HOH . C 3 HOH A 100 500 279 HOH HOH . C 3 HOH A 101 501 241 HOH HOH . C 3 HOH A 102 502 290 HOH HOH . C 3 HOH A 103 503 235 HOH HOH . C 3 HOH A 104 504 100 HOH HOH . C 3 HOH A 105 505 180 HOH HOH . C 3 HOH A 106 506 117 HOH HOH . C 3 HOH A 107 507 37 HOH HOH . C 3 HOH A 108 508 84 HOH HOH . C 3 HOH A 109 509 231 HOH HOH . C 3 HOH A 110 510 246 HOH HOH . C 3 HOH A 111 511 77 HOH HOH . C 3 HOH A 112 512 245 HOH HOH . C 3 HOH A 113 513 277 HOH HOH . C 3 HOH A 114 514 273 HOH HOH . C 3 HOH A 115 515 266 HOH HOH . C 3 HOH A 116 516 164 HOH HOH . C 3 HOH A 117 517 254 HOH HOH . C 3 HOH A 118 518 214 HOH HOH . C 3 HOH A 119 519 289 HOH HOH . C 3 HOH A 120 520 197 HOH HOH . C 3 HOH A 121 521 156 HOH HOH . C 3 HOH A 122 522 247 HOH HOH . C 3 HOH A 123 523 1 HOH HOH . C 3 HOH A 124 524 4 HOH HOH . C 3 HOH A 125 525 6 HOH HOH . C 3 HOH A 126 526 10 HOH HOH . C 3 HOH A 127 527 12 HOH HOH . C 3 HOH A 128 528 14 HOH HOH . C 3 HOH A 129 529 15 HOH HOH . C 3 HOH A 130 530 17 HOH HOH . C 3 HOH A 131 531 20 HOH HOH . C 3 HOH A 132 532 24 HOH HOH . C 3 HOH A 133 533 26 HOH HOH . C 3 HOH A 134 534 29 HOH HOH . C 3 HOH A 135 535 30 HOH HOH . C 3 HOH A 136 536 31 HOH HOH . C 3 HOH A 137 537 32 HOH HOH . C 3 HOH A 138 538 36 HOH HOH . C 3 HOH A 139 539 38 HOH HOH . C 3 HOH A 140 540 44 HOH HOH . C 3 HOH A 141 541 45 HOH HOH . C 3 HOH A 142 542 53 HOH HOH . C 3 HOH A 143 543 54 HOH HOH . C 3 HOH A 144 544 55 HOH HOH . C 3 HOH A 145 545 59 HOH HOH . C 3 HOH A 146 546 64 HOH HOH . C 3 HOH A 147 547 65 HOH HOH . C 3 HOH A 148 548 66 HOH HOH . C 3 HOH A 149 549 67 HOH HOH . C 3 HOH A 150 550 69 HOH HOH . C 3 HOH A 151 551 71 HOH HOH . C 3 HOH A 152 552 72 HOH HOH . C 3 HOH A 153 553 73 HOH HOH . C 3 HOH A 154 554 74 HOH HOH . C 3 HOH A 155 555 75 HOH HOH . C 3 HOH A 156 556 76 HOH HOH . C 3 HOH A 157 557 80 HOH HOH . C 3 HOH A 158 558 81 HOH HOH . C 3 HOH A 159 559 83 HOH HOH . C 3 HOH A 160 560 89 HOH HOH . C 3 HOH A 161 561 92 HOH HOH . C 3 HOH A 162 562 94 HOH HOH . C 3 HOH A 163 563 97 HOH HOH . C 3 HOH A 164 564 99 HOH HOH . C 3 HOH A 165 565 105 HOH HOH . C 3 HOH A 166 566 106 HOH HOH . C 3 HOH A 167 567 108 HOH HOH . C 3 HOH A 168 568 115 HOH HOH . C 3 HOH A 169 569 116 HOH HOH . C 3 HOH A 170 570 118 HOH HOH . C 3 HOH A 171 571 120 HOH HOH . C 3 HOH A 172 572 121 HOH HOH . C 3 HOH A 173 573 123 HOH HOH . C 3 HOH A 174 574 126 HOH HOH . C 3 HOH A 175 575 129 HOH HOH . C 3 HOH A 176 576 131 HOH HOH . C 3 HOH A 177 577 132 HOH HOH . C 3 HOH A 178 578 136 HOH HOH . C 3 HOH A 179 579 138 HOH HOH . C 3 HOH A 180 580 139 HOH HOH . C 3 HOH A 181 581 145 HOH HOH . C 3 HOH A 182 582 147 HOH HOH . C 3 HOH A 183 583 150 HOH HOH . C 3 HOH A 184 584 153 HOH HOH . C 3 HOH A 185 585 155 HOH HOH . C 3 HOH A 186 586 159 HOH HOH . C 3 HOH A 187 587 161 HOH HOH . C 3 HOH A 188 588 163 HOH HOH . C 3 HOH A 189 589 166 HOH HOH . C 3 HOH A 190 590 169 HOH HOH . C 3 HOH A 191 591 170 HOH HOH . C 3 HOH A 192 592 171 HOH HOH . C 3 HOH A 193 593 173 HOH HOH . C 3 HOH A 194 594 175 HOH HOH . C 3 HOH A 195 595 178 HOH HOH . C 3 HOH A 196 596 186 HOH HOH . C 3 HOH A 197 597 188 HOH HOH . C 3 HOH A 198 598 189 HOH HOH . C 3 HOH A 199 599 190 HOH HOH . C 3 HOH A 200 600 191 HOH HOH . C 3 HOH A 201 601 198 HOH HOH . C 3 HOH A 202 602 201 HOH HOH . C 3 HOH A 203 603 221 HOH HOH . C 3 HOH A 204 604 227 HOH HOH . C 3 HOH A 205 605 228 HOH HOH . C 3 HOH A 206 606 233 HOH HOH . C 3 HOH A 207 607 240 HOH HOH . C 3 HOH A 208 608 242 HOH HOH . C 3 HOH A 209 609 244 HOH HOH . C 3 HOH A 210 610 261 HOH HOH . C 3 HOH A 211 611 262 HOH HOH . C 3 HOH A 212 612 267 HOH HOH . C 3 HOH A 213 613 268 HOH HOH . C 3 HOH A 214 614 272 HOH HOH . C 3 HOH A 215 615 274 HOH HOH . C 3 HOH A 216 616 275 HOH HOH . C 3 HOH A 217 617 280 HOH HOH . C 3 HOH A 218 618 281 HOH HOH . C 3 HOH A 219 619 283 HOH HOH . C 3 HOH A 220 620 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 4H8 . . . B 2 -16.593 41.749 -12.045 1 21.99 ? C4 4H8 301 A 1 HETATM 2 C C5 4H8 . . . B 2 -17.636 39.96 -10.637 1 15.33 ? C5 4H8 301 A 1 HETATM 3 C C7 4H8 . . . B 2 -18.689 41.116 -8.785 1 17.76 ? C7 4H8 301 A 1 HETATM 4 C C10 4H8 . . . B 2 -20.899 41.686 -7.361 1 12.41 ? C10 4H8 301 A 1 HETATM 5 N N12 4H8 . . . B 2 -21.942 43.204 -5.856 1 17.84 ? N12 4H8 301 A 1 HETATM 6 C C9 4H8 . . . B 2 -19.727 42.373 -7.181 1 14.03 ? C9 4H8 301 A 1 HETATM 7 C C14 4H8 . . . B 2 -20.895 40.68 -8.309 1 13.88 ? C14 4H8 301 A 1 HETATM 8 C C11 4H8 . . . B 2 -22.098 42.056 -6.595 1 13.8 ? C11 4H8 301 A 1 HETATM 9 C C1 4H8 . . . B 2 -17.517 39.698 -13.062 1 20.25 ? C1 4H8 301 A 1 HETATM 10 C C3 4H8 . . . B 2 -19.036 41.367 -12.101 1 19.21 ? C3 4H8 301 A 1 HETATM 11 C C2 4H8 . . . B 2 -17.687 40.708 -11.954 1 19.62 ? C2 4H8 301 A 1 HETATM 12 N N8 4H8 . . . B 2 -18.618 42.102 -7.87 1 14.98 ? N8 4H8 301 A 1 HETATM 13 N N16 4H8 . . . B 2 -19.791 40.39 -9.01 1 15.69 ? N16 4H8 301 A 1 HETATM 14 N N15 4H8 . . . B 2 -22.057 39.944 -8.53 1 15.5 ? N15 4H8 301 A 1 HETATM 15 N N6 4H8 . . . B 2 -17.503 40.863 -9.506 1 15.38 ? N6 4H8 301 A 1 HETATM 16 O O13 4H8 . . . B 2 -23.158 41.448 -6.7 1 15.83 ? O13 4H8 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #