data_4YRF # _model_server_result.job_id b63UuTSNH0D4F6QGlqackg _model_server_result.datetime_utc '2024-12-04 09:19:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yrf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":508}' # _entry.id 4YRF # _exptl.entry_id 4YRF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.39 _cell.angle_gamma 90 _cell.entry_id 4YRF _cell.length_a 64.433 _cell.length_b 118.814 _cell.length_c 65.975 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YRF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 126.114758 0 65.91761 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id D _struct_conn.ptnr1_label_atom_id S _struct_conn.ptnr1_label_comp_id SO4 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SO4 _struct_conn.ptnr1_auth_seq_id 503 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 503 _struct_conn.ptnr2_symmetry 2_756 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.005 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 104 n n C1 C2 EDO sing 105 n n C1 H11 EDO sing 106 n n C1 H12 EDO sing 107 n n O1 HO1 EDO sing 108 n n C2 O2 EDO sing 109 n n C2 H21 EDO sing 110 n n C2 H22 EDO sing 111 n n O2 HO2 EDO sing 112 n n # _atom_sites.entry_id 4YRF _atom_sites.fract_transf_matrix[1][1] 0.01552 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000648 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008417 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01517 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HIS A 1 501 501 HIS HIS . C 3 4HS A 1 502 1 4HS 148 . D 4 SO4 A 1 503 1 SO4 SO4 . E 4 SO4 A 1 504 2 SO4 SO4 . F 4 SO4 A 1 505 3 SO4 SO4 . G 5 DMS A 1 506 4 DMS DMS . H 5 DMS A 1 507 5 DMS DMS . I 6 EDO A 1 508 6 EDO EDO . J 7 HOH A 1 601 116 HOH HOH . J 7 HOH A 2 602 140 HOH HOH . J 7 HOH A 3 603 68 HOH HOH . J 7 HOH A 4 604 145 HOH HOH . J 7 HOH A 5 605 31 HOH HOH . J 7 HOH A 6 606 24 HOH HOH . J 7 HOH A 7 607 46 HOH HOH . J 7 HOH A 8 608 82 HOH HOH . J 7 HOH A 9 609 17 HOH HOH . J 7 HOH A 10 610 50 HOH HOH . J 7 HOH A 11 611 19 HOH HOH . J 7 HOH A 12 612 54 HOH HOH . J 7 HOH A 13 613 142 HOH HOH . J 7 HOH A 14 614 149 HOH HOH . J 7 HOH A 15 615 74 HOH HOH . J 7 HOH A 16 616 29 HOH HOH . J 7 HOH A 17 617 33 HOH HOH . J 7 HOH A 18 618 25 HOH HOH . J 7 HOH A 19 619 80 HOH HOH . J 7 HOH A 20 620 103 HOH HOH . J 7 HOH A 21 621 3 HOH HOH . J 7 HOH A 22 622 144 HOH HOH . J 7 HOH A 23 623 16 HOH HOH . J 7 HOH A 24 624 53 HOH HOH . J 7 HOH A 25 625 23 HOH HOH . J 7 HOH A 26 626 14 HOH HOH . J 7 HOH A 27 627 34 HOH HOH . J 7 HOH A 28 628 87 HOH HOH . J 7 HOH A 29 629 94 HOH HOH . J 7 HOH A 30 630 141 HOH HOH . J 7 HOH A 31 631 76 HOH HOH . J 7 HOH A 32 632 8 HOH HOH . J 7 HOH A 33 633 125 HOH HOH . J 7 HOH A 34 634 70 HOH HOH . J 7 HOH A 35 635 89 HOH HOH . J 7 HOH A 36 636 7 HOH HOH . J 7 HOH A 37 637 10 HOH HOH . J 7 HOH A 38 638 63 HOH HOH . J 7 HOH A 39 639 11 HOH HOH . J 7 HOH A 40 640 27 HOH HOH . J 7 HOH A 41 641 15 HOH HOH . J 7 HOH A 42 642 22 HOH HOH . J 7 HOH A 43 643 45 HOH HOH . J 7 HOH A 44 644 96 HOH HOH . J 7 HOH A 45 645 143 HOH HOH . J 7 HOH A 46 646 151 HOH HOH . J 7 HOH A 47 647 66 HOH HOH . J 7 HOH A 48 648 148 HOH HOH . J 7 HOH A 49 649 4 HOH HOH . J 7 HOH A 50 650 35 HOH HOH . J 7 HOH A 51 651 42 HOH HOH . J 7 HOH A 52 652 108 HOH HOH . J 7 HOH A 53 653 95 HOH HOH . J 7 HOH A 54 654 136 HOH HOH . J 7 HOH A 55 655 64 HOH HOH . J 7 HOH A 56 656 98 HOH HOH . J 7 HOH A 57 657 12 HOH HOH . J 7 HOH A 58 658 117 HOH HOH . J 7 HOH A 59 659 55 HOH HOH . J 7 HOH A 60 660 47 HOH HOH . J 7 HOH A 61 661 113 HOH HOH . J 7 HOH A 62 662 61 HOH HOH . J 7 HOH A 63 663 52 HOH HOH . J 7 HOH A 64 664 72 HOH HOH . J 7 HOH A 65 665 41 HOH HOH . J 7 HOH A 66 666 43 HOH HOH . J 7 HOH A 67 667 56 HOH HOH . J 7 HOH A 68 668 13 HOH HOH . J 7 HOH A 69 669 51 HOH HOH . J 7 HOH A 70 670 104 HOH HOH . J 7 HOH A 71 671 39 HOH HOH . J 7 HOH A 72 672 5 HOH HOH . J 7 HOH A 73 673 26 HOH HOH . J 7 HOH A 74 674 146 HOH HOH . J 7 HOH A 75 675 127 HOH HOH . J 7 HOH A 76 676 84 HOH HOH . J 7 HOH A 77 677 30 HOH HOH . J 7 HOH A 78 678 93 HOH HOH . J 7 HOH A 79 679 129 HOH HOH . J 7 HOH A 80 680 114 HOH HOH . J 7 HOH A 81 681 9 HOH HOH . J 7 HOH A 82 682 32 HOH HOH . J 7 HOH A 83 683 112 HOH HOH . J 7 HOH A 84 684 128 HOH HOH . J 7 HOH A 85 685 90 HOH HOH . J 7 HOH A 86 686 107 HOH HOH . J 7 HOH A 87 687 75 HOH HOH . J 7 HOH A 88 688 81 HOH HOH . J 7 HOH A 89 689 38 HOH HOH . J 7 HOH A 90 690 62 HOH HOH . J 7 HOH A 91 691 79 HOH HOH . J 7 HOH A 92 692 18 HOH HOH . J 7 HOH A 93 693 36 HOH HOH . J 7 HOH A 94 694 133 HOH HOH . J 7 HOH A 95 695 69 HOH HOH . J 7 HOH A 96 696 44 HOH HOH . J 7 HOH A 97 697 77 HOH HOH . J 7 HOH A 98 698 28 HOH HOH . J 7 HOH A 99 699 71 HOH HOH . J 7 HOH A 100 700 123 HOH HOH . J 7 HOH A 101 701 139 HOH HOH . J 7 HOH A 102 702 120 HOH HOH . J 7 HOH A 103 703 1 HOH HOH . J 7 HOH A 104 704 109 HOH HOH . J 7 HOH A 105 705 86 HOH HOH . J 7 HOH A 106 706 124 HOH HOH . J 7 HOH A 107 707 106 HOH HOH . J 7 HOH A 108 708 85 HOH HOH . J 7 HOH A 109 709 99 HOH HOH . J 7 HOH A 110 710 134 HOH HOH . J 7 HOH A 111 711 2 HOH HOH . J 7 HOH A 112 712 83 HOH HOH . J 7 HOH A 113 713 135 HOH HOH . J 7 HOH A 114 714 92 HOH HOH . J 7 HOH A 115 715 118 HOH HOH . J 7 HOH A 116 716 111 HOH HOH . J 7 HOH A 117 717 150 HOH HOH . J 7 HOH A 118 718 102 HOH HOH . J 7 HOH A 119 719 97 HOH HOH . J 7 HOH A 120 720 100 HOH HOH . J 7 HOH A 121 721 132 HOH HOH . J 7 HOH A 122 722 49 HOH HOH . J 7 HOH A 123 723 6 HOH HOH . J 7 HOH A 124 724 101 HOH HOH . J 7 HOH A 125 725 37 HOH HOH . J 7 HOH A 126 726 88 HOH HOH . J 7 HOH A 127 727 122 HOH HOH . J 7 HOH A 128 728 78 HOH HOH . J 7 HOH A 129 729 138 HOH HOH . J 7 HOH A 130 730 110 HOH HOH . J 7 HOH A 131 731 67 HOH HOH . J 7 HOH A 132 732 73 HOH HOH . J 7 HOH A 133 733 121 HOH HOH . J 7 HOH A 134 734 119 HOH HOH . J 7 HOH A 135 735 59 HOH HOH . J 7 HOH A 136 736 91 HOH HOH . J 7 HOH A 137 737 20 HOH HOH . J 7 HOH A 138 738 21 HOH HOH . J 7 HOH A 139 739 130 HOH HOH . J 7 HOH A 140 740 48 HOH HOH . J 7 HOH A 141 741 131 HOH HOH . J 7 HOH A 142 742 152 HOH HOH . J 7 HOH A 143 743 147 HOH HOH . J 7 HOH A 144 744 105 HOH HOH . J 7 HOH A 145 745 126 HOH HOH . J 7 HOH A 146 746 40 HOH HOH . J 7 HOH A 147 747 115 HOH HOH . J 7 HOH A 148 748 65 HOH HOH . J 7 HOH A 149 749 57 HOH HOH . J 7 HOH A 150 750 58 HOH HOH . J 7 HOH A 151 751 137 HOH HOH . J 7 HOH A 152 752 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 6 70.994 20.37 40.783 1 63.11 ? C1 EDO 508 A 1 HETATM 2 O O1 EDO . . . I 6 69.598 20.474 41.056 1 61.66 ? O1 EDO 508 A 1 HETATM 3 C C2 EDO . . . I 6 71.772 20.448 42.09 1 66.85 ? C2 EDO 508 A 1 HETATM 4 O O2 EDO . . . I 6 72.371 19.177 42.374 1 70.24 ? O2 EDO 508 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #