data_4YRH # _model_server_result.job_id MSi1DUe8IHS_a3hzaLBdFw _model_server_result.datetime_utc '2024-11-24 05:20:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yrh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 4YRH # _exptl.entry_id 4YRH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 103.84 _cell.angle_gamma 90 _cell.entry_id 4YRH _cell.length_a 74.374 _cell.length_b 66.299 _cell.length_c 75.841 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YRH _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 135 A PHE 136 1_555 A N MSE 136 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale2 A C MSE 136 A MSE 137 1_555 A N LEU 137 A LEU 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? covale ? covale3 A C GLN 146 A GLN 147 1_555 A N MSE 147 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 147 A MSE 148 1_555 A N ALA 148 A ALA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C PHE 135 B PHE 136 1_555 B N MSE 136 B MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C MSE 136 B MSE 137 1_555 B N LEU 137 B LEU 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C GLN 146 B GLN 147 1_555 B N MSE 147 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C MSE 147 B MSE 148 1_555 B N ALA 148 B ALA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 4YRH _atom_sites.fract_transf_matrix[1][1] 0.013446 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003313 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015083 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACO A 1 201 201 ACO ACO . D 3 EPE A 1 202 202 EPE EPE . E 2 ACO B 1 201 201 ACO ACO . F 3 EPE B 1 202 203 EPE EPE . G 4 HOH A 1 301 4 HOH HOH . G 4 HOH A 2 302 12 HOH HOH . G 4 HOH A 3 303 2 HOH HOH . H 4 HOH B 1 301 3 HOH HOH . H 4 HOH B 2 302 7 HOH HOH . H 4 HOH B 3 303 6 HOH HOH . H 4 HOH B 4 304 14 HOH HOH . H 4 HOH B 5 305 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . E 2 -26.178 31.254 41.193 1 100.6 ? N1A ACO 201 B 1 HETATM 2 C C2A ACO . . . E 2 -25.659 30.062 40.844 1 103.11 ? C2A ACO 201 B 1 HETATM 3 N N3A ACO . . . E 2 -24.35 29.858 40.607 1 100.33 ? N3A ACO 201 B 1 HETATM 4 C C4A ACO . . . E 2 -23.459 30.873 40.709 1 102.01 ? C4A ACO 201 B 1 HETATM 5 C C5A ACO . . . E 2 -23.95 32.207 41.086 1 105.07 ? C5A ACO 201 B 1 HETATM 6 C C6A ACO . . . E 2 -25.404 32.353 41.331 1 99.18 ? C6A ACO 201 B 1 HETATM 7 N N6A ACO . . . E 2 -25.94 33.547 41.682 1 93.1 ? N6A ACO 201 B 1 HETATM 8 N N7A ACO . . . E 2 -22.876 33.018 41.115 1 105.69 ? N7A ACO 201 B 1 HETATM 9 C C8A ACO . . . E 2 -21.792 32.269 40.786 1 107.15 ? C8A ACO 201 B 1 HETATM 10 N N9A ACO . . . E 2 -22.139 30.991 40.544 1 101.6 ? N9A ACO 201 B 1 HETATM 11 C C1B ACO . . . E 2 -21.212 29.898 40.159 1 94.32 ? C1B ACO 201 B 1 HETATM 12 C C2B ACO . . . E 2 -21.224 29.723 38.649 1 99.49 ? C2B ACO 201 B 1 HETATM 13 O O2B ACO . . . E 2 -21.629 28.393 38.312 1 94.91 ? O2B ACO 201 B 1 HETATM 14 C C3B ACO . . . E 2 -19.803 29.967 38.181 1 109.01 ? C3B ACO 201 B 1 HETATM 15 O O3B ACO . . . E 2 -19.291 28.8 37.545 1 115.91 ? O3B ACO 201 B 1 HETATM 16 P P3B ACO . . . E 2 -19.845 28.345 36.103 1 116.32 ? P3B ACO 201 B 1 HETATM 17 O O7A ACO . . . E 2 -20.508 29.588 35.56 1 105.39 ? O7A ACO 201 B 1 HETATM 18 O O8A ACO . . . E 2 -20.799 27.218 36.419 1 112.4 ? O8A ACO 201 B 1 HETATM 19 O O9A ACO . . . E 2 -18.605 27.921 35.354 1 106.82 ? O9A ACO 201 B 1 HETATM 20 C C4B ACO . . . E 2 -18.992 30.279 39.429 1 94.35 ? C4B ACO 201 B 1 HETATM 21 O O4B ACO . . . E 2 -19.878 30.235 40.55 1 95.74 ? O4B ACO 201 B 1 HETATM 22 C C5B ACO . . . E 2 -18.345 31.655 39.338 1 99.49 ? C5B ACO 201 B 1 HETATM 23 O O5B ACO . . . E 2 -19.241 32.561 38.699 1 109.55 ? O5B ACO 201 B 1 HETATM 24 P P1A ACO . . . E 2 -18.917 34.138 38.656 1 70.98 ? P1A ACO 201 B 1 HETATM 25 O O1A ACO . . . E 2 -17.421 34.309 38.542 1 64.71 ? O1A ACO 201 B 1 HETATM 26 O O2A ACO . . . E 2 -19.829 34.781 37.639 1 84.18 ? O2A ACO 201 B 1 HETATM 27 O O3A ACO . . . E 2 -19.37 34.63 40.121 1 72.87 ? O3A ACO 201 B 1 HETATM 28 P P2A ACO . . . E 2 -19.293 36.188 40.52 1 73.37 ? P2A ACO 201 B 1 HETATM 29 O O4A ACO . . . E 2 -17.931 36.709 40.128 1 65.36 ? O4A ACO 201 B 1 HETATM 30 O O5A ACO . . . E 2 -20.538 36.869 40.004 1 60.67 ? O5A ACO 201 B 1 HETATM 31 O O6A ACO . . . E 2 -19.372 36.143 42.127 1 75.26 ? O6A ACO 201 B 1 HETATM 32 C CBP ACO . . . E 2 -21.005 37.458 43.312 1 95.08 ? CBP ACO 201 B 1 HETATM 33 C CCP ACO . . . E 2 -19.551 37.343 42.876 1 73.53 ? CCP ACO 201 B 1 HETATM 34 C CDP ACO . . . E 2 -21.49 36.122 43.856 1 52.28 ? CDP ACO 201 B 1 HETATM 35 C CEP ACO . . . E 2 -21.868 37.881 42.131 1 64.31 ? CEP ACO 201 B 1 HETATM 36 C CAP ACO . . . E 2 -21.113 38.511 44.409 1 92.42 ? CAP ACO 201 B 1 HETATM 37 O OAP ACO . . . E 2 -20.579 39.751 43.935 1 90.68 ? OAP ACO 201 B 1 HETATM 38 C C9P ACO . . . E 2 -22.554 38.697 44.782 1 85.79 ? C9P ACO 201 B 1 HETATM 39 O O9P ACO . . . E 2 -23.124 39.749 44.545 1 90.78 ? O9P ACO 201 B 1 HETATM 40 N N8P ACO . . . E 2 -23.152 37.667 45.374 1 82.85 ? N8P ACO 201 B 1 HETATM 41 C C7P ACO . . . E 2 -24.585 37.647 45.594 1 81.46 ? C7P ACO 201 B 1 HETATM 42 C C6P ACO . . . E 2 -24.967 38.275 46.929 1 45.73 ? C6P ACO 201 B 1 HETATM 43 C C5P ACO . . . E 2 -24.028 37.781 48.004 1 59.02 ? C5P ACO 201 B 1 HETATM 44 O O5P ACO . . . E 2 -24.352 36.859 48.734 1 65.81 ? O5P ACO 201 B 1 HETATM 45 N N4P ACO . . . E 2 -22.856 38.402 48.098 1 57.88 ? N4P ACO 201 B 1 HETATM 46 C C3P ACO . . . E 2 -21.698 37.751 48.679 1 57.69 ? C3P ACO 201 B 1 HETATM 47 C C2P ACO . . . E 2 -21.451 38.197 50.115 1 82.87 ? C2P ACO 201 B 1 HETATM 48 S S1P ACO . . . E 2 -21.407 36.787 51.17 1 86.14 ? S1P ACO 201 B 1 HETATM 49 C C ACO . . . E 2 -20.482 37.389 52.418 1 85.84 ? C ACO 201 B 1 HETATM 50 O O ACO . . . E 2 -20.806 38.443 52.939 1 77.34 ? O ACO 201 B 1 HETATM 51 C CH3 ACO . . . E 2 -19.276 36.618 52.865 1 91.9 ? CH3 ACO 201 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 51 #