data_4YRH
#
_model_server_result.job_id            yEO4sPMt9IVO39d-NKS5fg 
_model_server_result.datetime_utc      '2024-11-02 07:21:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yrh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":202}' 
#
_entry.id    4YRH 
#
_exptl.entry_id    4YRH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              238.305 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          103.84 
_cell.angle_gamma         90 
_cell.entry_id            4YRH 
_cell.length_a            74.374 
_cell.length_b            66.299 
_cell.length_c            75.841 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YRH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C PHE 135 A PHE 136 1_555 A N MSE 136 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? 
covale ? covale2 A C MSE 136 A MSE 137 1_555 A N LEU 137 A LEU 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 ? 
covale ? covale3 A C GLN 146 A GLN 147 1_555 A N MSE 147 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale4 A C MSE 147 A MSE 148 1_555 A N ALA 148 A ALA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 B C PHE 135 B PHE 136 1_555 B N MSE 136 B MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 B C MSE 136 B MSE 137 1_555 B N LEU 137 B LEU 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 B C GLN 146 B GLN 147 1_555 B N MSE 147 B MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale8 B C MSE 147 B MSE 148 1_555 B N ALA 148 B ALA 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C8 H18 N2 O4 S' 
_chem_comp.formula_weight    238.305 
_chem_comp.id                EPE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEPES 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 EPE sing 174 n n 
N1 C6 EPE sing 175 n n 
N1 C9 EPE sing 176 n n 
C2 C3 EPE sing 177 n n 
C2 H21 EPE sing 178 n n 
C2 H22 EPE sing 179 n n 
C3 N4 EPE sing 180 n n 
C3 H31 EPE sing 181 n n 
C3 H32 EPE sing 182 n n 
N4 C5 EPE sing 183 n n 
N4 C7 EPE sing 184 n n 
C5 C6 EPE sing 185 n n 
C5 H51 EPE sing 186 n n 
C5 H52 EPE sing 187 n n 
C6 H61 EPE sing 188 n n 
C6 H62 EPE sing 189 n n 
C7 C8 EPE sing 190 n n 
C7 H71 EPE sing 191 n n 
C7 H72 EPE sing 192 n n 
C8 O8 EPE sing 193 n n 
C8 H81 EPE sing 194 n n 
C8 H82 EPE sing 195 n n 
O8 HO8 EPE sing 196 n n 
C9 C10 EPE sing 197 n n 
C9 H91 EPE sing 198 n n 
C9 H92 EPE sing 199 n n 
C10 S EPE sing 200 n n 
C10 H101 EPE sing 201 n n 
C10 H102 EPE sing 202 n n 
S O1S EPE doub 203 n n 
S O2S EPE doub 204 n n 
S O3S EPE sing 205 n n 
O3S HOS3 EPE sing 206 n n 
#
_atom_sites.entry_id                     4YRH 
_atom_sites.fract_transf_matrix[1][1]    0.013446 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003313 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015083 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01358 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ACO A 1 201 201 ACO ACO . 
D 3 EPE A 1 202 202 EPE EPE . 
E 2 ACO B 1 201 201 ACO ACO . 
F 3 EPE B 1 202 203 EPE EPE . 
G 4 HOH A 1 301 4 HOH HOH . 
G 4 HOH A 2 302 12 HOH HOH . 
G 4 HOH A 3 303 2 HOH HOH . 
H 4 HOH B 1 301 3 HOH HOH . 
H 4 HOH B 2 302 7 HOH HOH . 
H 4 HOH B 3 303 6 HOH HOH . 
H 4 HOH B 4 304 14 HOH HOH . 
H 4 HOH B 5 305 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 EPE . . . D 3 24.602 37.347 83.543 1 95.6 ? N1 EPE 202 A 1 
HETATM 2 C C2 EPE . . . D 3 25.443 38.183 84.349 1 95.64 ? C2 EPE 202 A 1 
HETATM 3 C C3 EPE . . . D 3 25.903 37.564 85.639 1 91.37 ? C3 EPE 202 A 1 
HETATM 4 N N4 EPE . . . D 3 24.97 36.623 86.196 1 89.14 ? N4 EPE 202 A 1 
HETATM 5 C C5 EPE . . . D 3 24.767 35.538 85.305 1 84.76 ? C5 EPE 202 A 1 
HETATM 6 C C6 EPE . . . D 3 24.619 35.936 83.848 1 91.75 ? C6 EPE 202 A 1 
HETATM 7 C C7 EPE . . . D 3 23.681 37.199 86.616 1 62.63 ? C7 EPE 202 A 1 
HETATM 8 C C8 EPE . . . D 3 23.87 38.341 87.585 1 49.01 ? C8 EPE 202 A 1 
HETATM 9 O O8 EPE . . . D 3 24.06 39.574 86.861 1 49.02 ? O8 EPE 202 A 1 
HETATM 10 C C9 EPE . . . D 3 24.818 37.544 82.11 1 92.04 ? C9 EPE 202 A 1 
HETATM 11 C C10 EPE . . . D 3 23.642 38.3 81.447 1 83 ? C10 EPE 202 A 1 
HETATM 12 S S EPE . . . D 3 24.003 38.516 79.754 1 108.3 ? S EPE 202 A 1 
HETATM 13 O O1S EPE . . . D 3 23.177 39.627 79.137 1 100.32 ? O1S EPE 202 A 1 
HETATM 14 O O2S EPE . . . D 3 23.843 37.223 79.014 1 106.08 ? O2S EPE 202 A 1 
HETATM 15 O O3S EPE . . . D 3 25.39 39.045 79.575 1 104.14 ? O3S EPE 202 A 1 
HETATM 16 H H21 EPE . . . D 3 24.959 39.031 84.549 1 114.76 ? H21 EPE 202 A 1 
HETATM 17 H H22 EPE . . . D 3 26.224 38.417 83.83 1 114.76 ? H22 EPE 202 A 1 
HETATM 18 H H31 EPE . . . D 3 26.058 38.297 86.304 1 109.65 ? H31 EPE 202 A 1 
HETATM 19 H H32 EPE . . . D 3 26.757 37.096 85.477 1 109.65 ? H32 EPE 202 A 1 
HETATM 20 H H51 EPE . . . D 3 23.991 35.037 85.58 1 101.71 ? H51 EPE 202 A 1 
HETATM 21 H H52 EPE . . . D 3 25.576 34.938 85.373 1 101.71 ? H52 EPE 202 A 1 
HETATM 22 H H61 EPE . . . D 3 23.81 35.532 83.495 1 110.09 ? H61 EPE 202 A 1 
HETATM 23 H H62 EPE . . . D 3 25.394 35.531 83.345 1 110.09 ? H62 EPE 202 A 1 
HETATM 24 H H71 EPE . . . D 3 23.128 36.487 87.054 1 75.15 ? H71 EPE 202 A 1 
HETATM 25 H H72 EPE . . . D 3 23.194 37.534 85.808 1 75.15 ? H72 EPE 202 A 1 
HETATM 26 H H81 EPE . . . D 3 24.668 38.161 88.16 1 58.81 ? H81 EPE 202 A 1 
HETATM 27 H H82 EPE . . . D 3 23.063 38.422 88.157 1 58.81 ? H82 EPE 202 A 1 
HETATM 28 H HO8 EPE . . . D 3 24.345 40.19 87.408 1 58.83 ? HO8 EPE 202 A 1 
HETATM 29 H H91 EPE . . . D 3 25.657 38.07 81.974 1 110.45 ? H91 EPE 202 A 1 
HETATM 30 H H92 EPE . . . D 3 24.925 36.656 81.665 1 110.45 ? H92 EPE 202 A 1 
HETATM 31 H H101 EPE . . . D 3 22.837 37.787 81.542 1 99.61 ? H101 EPE 202 A 1 
HETATM 32 H H102 EPE . . . D 3 23.529 39.177 81.874 1 99.61 ? H102 EPE 202 A 1 
#
_model_server_stats.io_time_ms              56 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           32 
#