data_4YRM
#
_model_server_result.job_id            4Lz5sd-92uMDFWQeQBgR2g 
_model_server_result.datetime_utc      '2024-10-14 23:26:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yrm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":504}' 
#
_entry.id    4YRM 
#
_exptl.entry_id    4YRM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          91.03 
_cell.angle_gamma         90 
_cell.entry_id            4YRM 
_cell.length_a            90.128 
_cell.length_b            119.461 
_cell.length_c            94.552 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YRM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,N 1 1 
B,I,J,K,L,M,O 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 43.364341 -59.7305 94.536722 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 L N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 98 n n 
C1 C2 EDO sing 99 n n 
C1 H11 EDO sing 100 n n 
C1 H12 EDO sing 101 n n 
O1 HO1 EDO sing 102 n n 
C2 O2 EDO sing 103 n n 
C2 H21 EDO sing 104 n n 
C2 H22 EDO sing 105 n n 
O2 HO2 EDO sing 106 n n 
#
_atom_sites.entry_id                     4YRM 
_atom_sites.fract_transf_matrix[1][1]    0.011095 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.0002 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008371 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010578 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HIS A 1 501 1 HIS HIS . 
D 3 282 A 1 502 3 282 443 . 
E 4 SO4 A 1 503 1 SO4 SO4 . 
F 4 SO4 A 1 504 5 SO4 SO4 . 
G 5 EDO A 1 505 7 EDO EDO . 
H 6 GOL A 1 506 8 GOL GOL . 
I 2 HIS B 1 501 2 HIS HIS . 
J 3 282 B 1 502 4 282 443 . 
K 4 SO4 B 1 503 2 SO4 SO4 . 
L 5 EDO B 1 504 6 EDO EDO . 
M 6 GOL B 1 505 9 GOL GOL . 
N 7 HOH A 1 601 284 HOH HOH . 
N 7 HOH A 2 602 283 HOH HOH . 
N 7 HOH A 3 603 131 HOH HOH . 
N 7 HOH A 4 604 91 HOH HOH . 
N 7 HOH A 5 605 152 HOH HOH . 
N 7 HOH A 6 606 138 HOH HOH . 
N 7 HOH A 7 607 32 HOH HOH . 
N 7 HOH A 8 608 43 HOH HOH . 
N 7 HOH A 9 609 62 HOH HOH . 
N 7 HOH A 10 610 101 HOH HOH . 
N 7 HOH A 11 611 50 HOH HOH . 
N 7 HOH A 12 612 83 HOH HOH . 
N 7 HOH A 13 613 17 HOH HOH . 
N 7 HOH A 14 614 79 HOH HOH . 
N 7 HOH A 15 615 47 HOH HOH . 
N 7 HOH A 16 616 295 HOH HOH . 
N 7 HOH A 17 617 39 HOH HOH . 
N 7 HOH A 18 618 148 HOH HOH . 
N 7 HOH A 19 619 93 HOH HOH . 
N 7 HOH A 20 620 4 HOH HOH . 
N 7 HOH A 21 621 281 HOH HOH . 
N 7 HOH A 22 622 244 HOH HOH . 
N 7 HOH A 23 623 87 HOH HOH . 
N 7 HOH A 24 624 147 HOH HOH . 
N 7 HOH A 25 625 298 HOH HOH . 
N 7 HOH A 26 626 208 HOH HOH . 
N 7 HOH A 27 627 60 HOH HOH . 
N 7 HOH A 28 628 45 HOH HOH . 
N 7 HOH A 29 629 15 HOH HOH . 
N 7 HOH A 30 630 18 HOH HOH . 
N 7 HOH A 31 631 269 HOH HOH . 
N 7 HOH A 32 632 132 HOH HOH . 
N 7 HOH A 33 633 212 HOH HOH . 
N 7 HOH A 34 634 272 HOH HOH . 
N 7 HOH A 35 635 240 HOH HOH . 
N 7 HOH A 36 636 109 HOH HOH . 
N 7 HOH A 37 637 105 HOH HOH . 
N 7 HOH A 38 638 64 HOH HOH . 
N 7 HOH A 39 639 46 HOH HOH . 
N 7 HOH A 40 640 270 HOH HOH . 
N 7 HOH A 41 641 141 HOH HOH . 
N 7 HOH A 42 642 159 HOH HOH . 
N 7 HOH A 43 643 185 HOH HOH . 
N 7 HOH A 44 644 234 HOH HOH . 
N 7 HOH A 45 645 40 HOH HOH . 
N 7 HOH A 46 646 55 HOH HOH . 
N 7 HOH A 47 647 238 HOH HOH . 
N 7 HOH A 48 648 168 HOH HOH . 
N 7 HOH A 49 649 48 HOH HOH . 
N 7 HOH A 50 650 85 HOH HOH . 
N 7 HOH A 51 651 139 HOH HOH . 
N 7 HOH A 52 652 29 HOH HOH . 
N 7 HOH A 53 653 136 HOH HOH . 
N 7 HOH A 54 654 245 HOH HOH . 
N 7 HOH A 55 655 78 HOH HOH . 
N 7 HOH A 56 656 66 HOH HOH . 
N 7 HOH A 57 657 217 HOH HOH . 
N 7 HOH A 58 658 287 HOH HOH . 
N 7 HOH A 59 659 218 HOH HOH . 
N 7 HOH A 60 660 49 HOH HOH . 
N 7 HOH A 61 661 112 HOH HOH . 
N 7 HOH A 62 662 110 HOH HOH . 
N 7 HOH A 63 663 285 HOH HOH . 
N 7 HOH A 64 664 248 HOH HOH . 
N 7 HOH A 65 665 115 HOH HOH . 
N 7 HOH A 66 666 52 HOH HOH . 
N 7 HOH A 67 667 123 HOH HOH . 
N 7 HOH A 68 668 16 HOH HOH . 
N 7 HOH A 69 669 192 HOH HOH . 
N 7 HOH A 70 670 88 HOH HOH . 
N 7 HOH A 71 671 158 HOH HOH . 
N 7 HOH A 72 672 14 HOH HOH . 
N 7 HOH A 73 673 118 HOH HOH . 
N 7 HOH A 74 674 173 HOH HOH . 
N 7 HOH A 75 675 119 HOH HOH . 
N 7 HOH A 76 676 54 HOH HOH . 
N 7 HOH A 77 677 169 HOH HOH . 
N 7 HOH A 78 678 95 HOH HOH . 
N 7 HOH A 79 679 230 HOH HOH . 
N 7 HOH A 80 680 211 HOH HOH . 
N 7 HOH A 81 681 133 HOH HOH . 
N 7 HOH A 82 682 155 HOH HOH . 
N 7 HOH A 83 683 182 HOH HOH . 
N 7 HOH A 84 684 63 HOH HOH . 
N 7 HOH A 85 685 13 HOH HOH . 
N 7 HOH A 86 686 67 HOH HOH . 
N 7 HOH A 87 687 26 HOH HOH . 
N 7 HOH A 88 688 65 HOH HOH . 
N 7 HOH A 89 689 56 HOH HOH . 
N 7 HOH A 90 690 296 HOH HOH . 
N 7 HOH A 91 691 144 HOH HOH . 
N 7 HOH A 92 692 102 HOH HOH . 
N 7 HOH A 93 693 103 HOH HOH . 
N 7 HOH A 94 694 231 HOH HOH . 
N 7 HOH A 95 695 11 HOH HOH . 
N 7 HOH A 96 696 128 HOH HOH . 
N 7 HOH A 97 697 75 HOH HOH . 
N 7 HOH A 98 698 143 HOH HOH . 
N 7 HOH A 99 699 251 HOH HOH . 
N 7 HOH A 100 700 252 HOH HOH . 
N 7 HOH A 101 701 253 HOH HOH . 
N 7 HOH A 102 702 157 HOH HOH . 
N 7 HOH A 103 703 265 HOH HOH . 
N 7 HOH A 104 704 256 HOH HOH . 
N 7 HOH A 105 705 271 HOH HOH . 
N 7 HOH A 106 706 223 HOH HOH . 
N 7 HOH A 107 707 254 HOH HOH . 
N 7 HOH A 108 708 7 HOH HOH . 
N 7 HOH A 109 709 306 HOH HOH . 
N 7 HOH A 110 710 73 HOH HOH . 
N 7 HOH A 111 711 42 HOH HOH . 
N 7 HOH A 112 712 57 HOH HOH . 
N 7 HOH A 113 713 127 HOH HOH . 
N 7 HOH A 114 714 246 HOH HOH . 
N 7 HOH A 115 715 82 HOH HOH . 
N 7 HOH A 116 716 300 HOH HOH . 
N 7 HOH A 117 717 237 HOH HOH . 
N 7 HOH A 118 718 121 HOH HOH . 
N 7 HOH A 119 719 302 HOH HOH . 
N 7 HOH A 120 720 258 HOH HOH . 
N 7 HOH A 121 721 92 HOH HOH . 
N 7 HOH A 122 722 290 HOH HOH . 
N 7 HOH A 123 723 276 HOH HOH . 
N 7 HOH A 124 724 202 HOH HOH . 
N 7 HOH A 125 725 294 HOH HOH . 
N 7 HOH A 126 726 309 HOH HOH . 
N 7 HOH A 127 727 266 HOH HOH . 
N 7 HOH A 128 728 146 HOH HOH . 
N 7 HOH A 129 729 301 HOH HOH . 
N 7 HOH A 130 730 70 HOH HOH . 
N 7 HOH A 131 731 210 HOH HOH . 
N 7 HOH A 132 732 204 HOH HOH . 
N 7 HOH A 133 733 305 HOH HOH . 
N 7 HOH A 134 734 264 HOH HOH . 
N 7 HOH A 135 735 140 HOH HOH . 
N 7 HOH A 136 736 282 HOH HOH . 
O 7 HOH B 1 601 214 HOH HOH . 
O 7 HOH B 2 602 274 HOH HOH . 
O 7 HOH B 3 603 308 HOH HOH . 
O 7 HOH B 4 604 289 HOH HOH . 
O 7 HOH B 5 605 34 HOH HOH . 
O 7 HOH B 6 606 100 HOH HOH . 
O 7 HOH B 7 607 130 HOH HOH . 
O 7 HOH B 8 608 68 HOH HOH . 
O 7 HOH B 9 609 106 HOH HOH . 
O 7 HOH B 10 610 126 HOH HOH . 
O 7 HOH B 11 611 219 HOH HOH . 
O 7 HOH B 12 612 59 HOH HOH . 
O 7 HOH B 13 613 165 HOH HOH . 
O 7 HOH B 14 614 181 HOH HOH . 
O 7 HOH B 15 615 81 HOH HOH . 
O 7 HOH B 16 616 198 HOH HOH . 
O 7 HOH B 17 617 44 HOH HOH . 
O 7 HOH B 18 618 25 HOH HOH . 
O 7 HOH B 19 619 293 HOH HOH . 
O 7 HOH B 20 620 96 HOH HOH . 
O 7 HOH B 21 621 69 HOH HOH . 
O 7 HOH B 22 622 304 HOH HOH . 
O 7 HOH B 23 623 176 HOH HOH . 
O 7 HOH B 24 624 213 HOH HOH . 
O 7 HOH B 25 625 86 HOH HOH . 
O 7 HOH B 26 626 129 HOH HOH . 
O 7 HOH B 27 627 311 HOH HOH . 
O 7 HOH B 28 628 160 HOH HOH . 
O 7 HOH B 29 629 84 HOH HOH . 
O 7 HOH B 30 630 145 HOH HOH . 
O 7 HOH B 31 631 22 HOH HOH . 
O 7 HOH B 32 632 24 HOH HOH . 
O 7 HOH B 33 633 71 HOH HOH . 
O 7 HOH B 34 634 8 HOH HOH . 
O 7 HOH B 35 635 94 HOH HOH . 
O 7 HOH B 36 636 21 HOH HOH . 
O 7 HOH B 37 637 107 HOH HOH . 
O 7 HOH B 38 638 263 HOH HOH . 
O 7 HOH B 39 639 58 HOH HOH . 
O 7 HOH B 40 640 149 HOH HOH . 
O 7 HOH B 41 641 30 HOH HOH . 
O 7 HOH B 42 642 20 HOH HOH . 
O 7 HOH B 43 643 6 HOH HOH . 
O 7 HOH B 44 644 74 HOH HOH . 
O 7 HOH B 45 645 19 HOH HOH . 
O 7 HOH B 46 646 206 HOH HOH . 
O 7 HOH B 47 647 36 HOH HOH . 
O 7 HOH B 48 648 150 HOH HOH . 
O 7 HOH B 49 649 61 HOH HOH . 
O 7 HOH B 50 650 33 HOH HOH . 
O 7 HOH B 51 651 164 HOH HOH . 
O 7 HOH B 52 652 207 HOH HOH . 
O 7 HOH B 53 653 193 HOH HOH . 
O 7 HOH B 54 654 239 HOH HOH . 
O 7 HOH B 55 655 161 HOH HOH . 
O 7 HOH B 56 656 12 HOH HOH . 
O 7 HOH B 57 657 288 HOH HOH . 
O 7 HOH B 58 658 197 HOH HOH . 
O 7 HOH B 59 659 23 HOH HOH . 
O 7 HOH B 60 660 243 HOH HOH . 
O 7 HOH B 61 661 216 HOH HOH . 
O 7 HOH B 62 662 215 HOH HOH . 
O 7 HOH B 63 663 171 HOH HOH . 
O 7 HOH B 64 664 122 HOH HOH . 
O 7 HOH B 65 665 10 HOH HOH . 
O 7 HOH B 66 666 111 HOH HOH . 
O 7 HOH B 67 667 174 HOH HOH . 
O 7 HOH B 68 668 116 HOH HOH . 
O 7 HOH B 69 669 120 HOH HOH . 
O 7 HOH B 70 670 186 HOH HOH . 
O 7 HOH B 71 671 51 HOH HOH . 
O 7 HOH B 72 672 125 HOH HOH . 
O 7 HOH B 73 673 53 HOH HOH . 
O 7 HOH B 74 674 97 HOH HOH . 
O 7 HOH B 75 675 137 HOH HOH . 
O 7 HOH B 76 676 31 HOH HOH . 
O 7 HOH B 77 677 222 HOH HOH . 
O 7 HOH B 78 678 175 HOH HOH . 
O 7 HOH B 79 679 220 HOH HOH . 
O 7 HOH B 80 680 229 HOH HOH . 
O 7 HOH B 81 681 72 HOH HOH . 
O 7 HOH B 82 682 37 HOH HOH . 
O 7 HOH B 83 683 235 HOH HOH . 
O 7 HOH B 84 684 260 HOH HOH . 
O 7 HOH B 85 685 310 HOH HOH . 
O 7 HOH B 86 686 236 HOH HOH . 
O 7 HOH B 87 687 262 HOH HOH . 
O 7 HOH B 88 688 35 HOH HOH . 
O 7 HOH B 89 689 9 HOH HOH . 
O 7 HOH B 90 690 108 HOH HOH . 
O 7 HOH B 91 691 77 HOH HOH . 
O 7 HOH B 92 692 227 HOH HOH . 
O 7 HOH B 93 693 187 HOH HOH . 
O 7 HOH B 94 694 38 HOH HOH . 
O 7 HOH B 95 695 228 HOH HOH . 
O 7 HOH B 96 696 27 HOH HOH . 
O 7 HOH B 97 697 277 HOH HOH . 
O 7 HOH B 98 698 189 HOH HOH . 
O 7 HOH B 99 699 275 HOH HOH . 
O 7 HOH B 100 700 255 HOH HOH . 
O 7 HOH B 101 701 225 HOH HOH . 
O 7 HOH B 102 702 41 HOH HOH . 
O 7 HOH B 103 703 114 HOH HOH . 
O 7 HOH B 104 704 135 HOH HOH . 
O 7 HOH B 105 705 167 HOH HOH . 
O 7 HOH B 106 706 104 HOH HOH . 
O 7 HOH B 107 707 261 HOH HOH . 
O 7 HOH B 108 708 1 HOH HOH . 
O 7 HOH B 109 709 188 HOH HOH . 
O 7 HOH B 110 710 163 HOH HOH . 
O 7 HOH B 111 711 196 HOH HOH . 
O 7 HOH B 112 712 190 HOH HOH . 
O 7 HOH B 113 713 2 HOH HOH . 
O 7 HOH B 114 714 259 HOH HOH . 
O 7 HOH B 115 715 247 HOH HOH . 
O 7 HOH B 116 716 291 HOH HOH . 
O 7 HOH B 117 717 170 HOH HOH . 
O 7 HOH B 118 718 76 HOH HOH . 
O 7 HOH B 119 719 273 HOH HOH . 
O 7 HOH B 120 720 99 HOH HOH . 
O 7 HOH B 121 721 98 HOH HOH . 
O 7 HOH B 122 722 134 HOH HOH . 
O 7 HOH B 123 723 232 HOH HOH . 
O 7 HOH B 124 724 209 HOH HOH . 
O 7 HOH B 125 725 250 HOH HOH . 
O 7 HOH B 126 726 200 HOH HOH . 
O 7 HOH B 127 727 292 HOH HOH . 
O 7 HOH B 128 728 199 HOH HOH . 
O 7 HOH B 129 729 279 HOH HOH . 
O 7 HOH B 130 730 286 HOH HOH . 
O 7 HOH B 131 731 280 HOH HOH . 
O 7 HOH B 132 732 299 HOH HOH . 
O 7 HOH B 133 733 241 HOH HOH . 
O 7 HOH B 134 734 224 HOH HOH . 
O 7 HOH B 135 735 303 HOH HOH . 
O 7 HOH B 136 736 242 HOH HOH . 
O 7 HOH B 137 737 205 HOH HOH . 
O 7 HOH B 138 738 203 HOH HOH . 
O 7 HOH B 139 739 278 HOH HOH . 
O 7 HOH B 140 740 226 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . L 5 33.75 40.29 71.286 1 57.83 ? C1 EDO 504 B 1 
HETATM 2 O O1 EDO . . . L 5 34.919 39.741 70.668 1 60.85 ? O1 EDO 504 B 1 
HETATM 3 C C2 EDO . . . L 5 32.552 40.016 70.388 1 54.54 ? C2 EDO 504 B 1 
HETATM 4 O O2 EDO . . . L 5 32.421 38.607 70.244 1 51.65 ? O2 EDO 504 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#