data_4YRO
#
_model_server_result.job_id            gRdiFu7O0bXzpysFIYUoCQ 
_model_server_result.datetime_utc      '2024-10-14 23:30:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yro 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
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_entry.id    4YRO 
#
_exptl.entry_id    4YRO 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              156.162 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HISTIDINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.52 
_cell.angle_gamma         90 
_cell.entry_id            4YRO 
_cell.length_a            64.63 
_cell.length_b            118.264 
_cell.length_c            66.109 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YRO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
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_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 126.353312 0 66.045068 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C6 H10 N3 O2 1' 
_chem_comp.formula_weight    156.162 
_chem_comp.id                HIS 
_chem_comp.mon_nstd_flag     y 
_chem_comp.name              HISTIDINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA HIS sing 163 n n 
N H HIS sing 164 n n 
N H2 HIS sing 165 n n 
CA C HIS sing 166 n n 
CA CB HIS sing 167 n n 
CA HA HIS sing 168 n n 
C O HIS doub 169 n n 
C OXT HIS sing 170 n n 
CB CG HIS sing 171 n n 
CB HB2 HIS sing 172 n n 
CB HB3 HIS sing 173 n n 
CG ND1 HIS sing 174 n y 
CG CD2 HIS doub 175 n y 
ND1 CE1 HIS doub 176 n y 
ND1 HD1 HIS sing 177 n n 
CD2 NE2 HIS sing 178 n y 
CD2 HD2 HIS sing 179 n n 
CE1 NE2 HIS sing 180 n y 
CE1 HE1 HIS sing 181 n n 
NE2 HE2 HIS sing 182 n n 
OXT HXT HIS sing 183 n n 
#
_atom_sites.entry_id                     4YRO 
_atom_sites.fract_transf_matrix[1][1]    0.015473 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00068 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008456 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HIS A 1 501 501 HIS HIS . 
C 3 4JO A 1 502 1 4JO 491 . 
D 4 EDO A 1 503 1 EDO EDO . 
E 4 EDO A 1 504 2 EDO EDO . 
F 5 SO4 A 1 505 3 SO4 SO4 . 
G 5 SO4 A 1 506 4 SO4 SO4 . 
H 5 SO4 A 1 507 5 SO4 SO4 . 
I 6 DMS A 1 508 6 DMS DMS . 
J 6 DMS A 1 509 7 DMS DMS . 
K 7 HOH A 1 601 3 HOH HOH . 
K 7 HOH A 2 602 8 HOH HOH . 
K 7 HOH A 3 603 100 HOH HOH . 
K 7 HOH A 4 604 88 HOH HOH . 
K 7 HOH A 5 605 47 HOH HOH . 
K 7 HOH A 6 606 36 HOH HOH . 
K 7 HOH A 7 607 89 HOH HOH . 
K 7 HOH A 8 608 51 HOH HOH . 
K 7 HOH A 9 609 72 HOH HOH . 
K 7 HOH A 10 610 20 HOH HOH . 
K 7 HOH A 11 611 12 HOH HOH . 
K 7 HOH A 12 612 10 HOH HOH . 
K 7 HOH A 13 613 44 HOH HOH . 
K 7 HOH A 14 614 17 HOH HOH . 
K 7 HOH A 15 615 67 HOH HOH . 
K 7 HOH A 16 616 69 HOH HOH . 
K 7 HOH A 17 617 30 HOH HOH . 
K 7 HOH A 18 618 42 HOH HOH . 
K 7 HOH A 19 619 28 HOH HOH . 
K 7 HOH A 20 620 87 HOH HOH . 
K 7 HOH A 21 621 18 HOH HOH . 
K 7 HOH A 22 622 90 HOH HOH . 
K 7 HOH A 23 623 35 HOH HOH . 
K 7 HOH A 24 624 43 HOH HOH . 
K 7 HOH A 25 625 13 HOH HOH . 
K 7 HOH A 26 626 52 HOH HOH . 
K 7 HOH A 27 627 16 HOH HOH . 
K 7 HOH A 28 628 33 HOH HOH . 
K 7 HOH A 29 629 24 HOH HOH . 
K 7 HOH A 30 630 27 HOH HOH . 
K 7 HOH A 31 631 23 HOH HOH . 
K 7 HOH A 32 632 54 HOH HOH . 
K 7 HOH A 33 633 63 HOH HOH . 
K 7 HOH A 34 634 37 HOH HOH . 
K 7 HOH A 35 635 76 HOH HOH . 
K 7 HOH A 36 636 70 HOH HOH . 
K 7 HOH A 37 637 74 HOH HOH . 
K 7 HOH A 38 638 6 HOH HOH . 
K 7 HOH A 39 639 75 HOH HOH . 
K 7 HOH A 40 640 14 HOH HOH . 
K 7 HOH A 41 641 91 HOH HOH . 
K 7 HOH A 42 642 34 HOH HOH . 
K 7 HOH A 43 643 61 HOH HOH . 
K 7 HOH A 44 644 25 HOH HOH . 
K 7 HOH A 45 645 39 HOH HOH . 
K 7 HOH A 46 646 19 HOH HOH . 
K 7 HOH A 47 647 84 HOH HOH . 
K 7 HOH A 48 648 4 HOH HOH . 
K 7 HOH A 49 649 60 HOH HOH . 
K 7 HOH A 50 650 38 HOH HOH . 
K 7 HOH A 51 651 32 HOH HOH . 
K 7 HOH A 52 652 5 HOH HOH . 
K 7 HOH A 53 653 46 HOH HOH . 
K 7 HOH A 54 654 26 HOH HOH . 
K 7 HOH A 55 655 29 HOH HOH . 
K 7 HOH A 56 656 48 HOH HOH . 
K 7 HOH A 57 657 96 HOH HOH . 
K 7 HOH A 58 658 55 HOH HOH . 
K 7 HOH A 59 659 40 HOH HOH . 
K 7 HOH A 60 660 79 HOH HOH . 
K 7 HOH A 61 661 68 HOH HOH . 
K 7 HOH A 62 662 77 HOH HOH . 
K 7 HOH A 63 663 82 HOH HOH . 
K 7 HOH A 64 664 31 HOH HOH . 
K 7 HOH A 65 665 11 HOH HOH . 
K 7 HOH A 66 666 71 HOH HOH . 
K 7 HOH A 67 667 1 HOH HOH . 
K 7 HOH A 68 668 15 HOH HOH . 
K 7 HOH A 69 669 73 HOH HOH . 
K 7 HOH A 70 670 56 HOH HOH . 
K 7 HOH A 71 671 50 HOH HOH . 
K 7 HOH A 72 672 9 HOH HOH . 
K 7 HOH A 73 673 64 HOH HOH . 
K 7 HOH A 74 674 49 HOH HOH . 
K 7 HOH A 75 675 45 HOH HOH . 
K 7 HOH A 76 676 21 HOH HOH . 
K 7 HOH A 77 677 2 HOH HOH . 
K 7 HOH A 78 678 81 HOH HOH . 
K 7 HOH A 79 679 78 HOH HOH . 
K 7 HOH A 80 680 92 HOH HOH . 
K 7 HOH A 81 681 95 HOH HOH . 
K 7 HOH A 82 682 80 HOH HOH . 
K 7 HOH A 83 683 7 HOH HOH . 
K 7 HOH A 84 684 86 HOH HOH . 
K 7 HOH A 85 685 58 HOH HOH . 
K 7 HOH A 86 686 22 HOH HOH . 
K 7 HOH A 87 687 66 HOH HOH . 
K 7 HOH A 88 688 53 HOH HOH . 
K 7 HOH A 89 689 97 HOH HOH . 
K 7 HOH A 90 690 65 HOH HOH . 
K 7 HOH A 91 691 99 HOH HOH . 
K 7 HOH A 92 692 85 HOH HOH . 
K 7 HOH A 93 693 94 HOH HOH . 
K 7 HOH A 94 694 98 HOH HOH . 
K 7 HOH A 95 695 93 HOH HOH . 
K 7 HOH A 96 696 41 HOH HOH . 
K 7 HOH A 97 697 62 HOH HOH . 
K 7 HOH A 98 698 57 HOH HOH . 
K 7 HOH A 99 699 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N HIS . . . B 2 74.071 4.736 19.97 1 34.01 ? N HIS 501 A 1 
HETATM 2 C CA HIS . . . B 2 73.767 4.195 18.607 1 34.41 ? CA HIS 501 A 1 
HETATM 3 C C HIS . . . B 2 72.418 4.659 18.085 1 35.05 ? C HIS 501 A 1 
HETATM 4 O O HIS . . . B 2 72.095 4.378 16.927 1 35.04 ? O HIS 501 A 1 
HETATM 5 C CB HIS . . . B 2 73.805 2.678 18.621 1 34.49 ? CB HIS 501 A 1 
HETATM 6 C CG HIS . . . B 2 75.094 2.134 19.118 1 34.7 ? CG HIS 501 A 1 
HETATM 7 N ND1 HIS . . . B 2 76.289 2.387 18.482 1 36.17 ? ND1 HIS 501 A 1 
HETATM 8 C CD2 HIS . . . B 2 75.389 1.388 20.206 1 34.41 ? CD2 HIS 501 A 1 
HETATM 9 C CE1 HIS . . . B 2 77.266 1.806 19.154 1 38.26 ? CE1 HIS 501 A 1 
HETATM 10 N NE2 HIS . . . B 2 76.745 1.184 20.199 1 36.68 ? NE2 HIS 501 A 1 
HETATM 11 O OXT HIS . . . B 2 71.647 5.315 18.797 1 33.52 ? OXT HIS 501 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           11 
#