data_4YRP # _model_server_result.job_id FO1ljmyqfZNK478F1390oQ _model_server_result.datetime_utc '2024-11-24 01:51:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yrp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4YRP # _exptl.entry_id 4YRP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.162 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.36 _cell.angle_gamma 90 _cell.entry_id 4YRP _cell.length_a 90.182 _cell.length_b 119.174 _cell.length_c 94.341 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YRP _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,T 1 1 B,K,L,M,N,O,P,Q,R,S,U 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 42.851887 -59.587 94.314424 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # _chem_comp.formula 'C6 H10 N3 O2 1' _chem_comp.formula_weight 156.162 _chem_comp.id HIS _chem_comp.mon_nstd_flag y _chem_comp.name HISTIDINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HIS sing 147 n n N H HIS sing 148 n n N H2 HIS sing 149 n n CA C HIS sing 150 n n CA CB HIS sing 151 n n CA HA HIS sing 152 n n C O HIS doub 153 n n C OXT HIS sing 154 n n CB CG HIS sing 155 n n CB HB2 HIS sing 156 n n CB HB3 HIS sing 157 n n CG ND1 HIS sing 158 n y CG CD2 HIS doub 159 n y ND1 CE1 HIS doub 160 n y ND1 HD1 HIS sing 161 n n CD2 NE2 HIS sing 162 n y CD2 HD2 HIS sing 163 n n CE1 NE2 HIS sing 164 n y CE1 HE1 HIS sing 165 n n NE2 HE2 HIS sing 166 n n OXT HXT HIS sing 167 n n # _atom_sites.entry_id 4YRP _atom_sites.fract_transf_matrix[1][1] 0.011089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000262 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010603 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HIS A 1 501 1 HIS HIS . D 3 PZH A 1 502 2 PZH 707 . E 4 DMS A 1 503 1 DMS DMS . F 4 DMS A 1 504 3 DMS DMS . G 5 EDO A 1 505 8 EDO EDO . H 6 SO4 A 1 506 10 SO4 SO4 . I 6 SO4 A 1 507 11 SO4 SO4 . J 6 SO4 A 1 508 14 SO4 SO4 . K 2 HIS B 1 501 2 HIS HIS . L 3 PZH B 1 502 1 PZH 707 . M 4 DMS B 1 503 2 DMS DMS . N 4 DMS B 1 504 4 DMS DMS . O 4 DMS B 1 505 5 DMS DMS . P 4 DMS B 1 506 6 DMS DMS . Q 5 EDO B 1 507 7 EDO EDO . R 6 SO4 B 1 508 12 SO4 SO4 . S 6 SO4 B 1 509 13 SO4 SO4 . T 7 HOH A 1 601 186 HOH HOH . T 7 HOH A 2 602 214 HOH HOH . T 7 HOH A 3 603 91 HOH HOH . T 7 HOH A 4 604 2 HOH HOH . T 7 HOH A 5 605 61 HOH HOH . T 7 HOH A 6 606 75 HOH HOH . T 7 HOH A 7 607 137 HOH HOH . T 7 HOH A 8 608 215 HOH HOH . T 7 HOH A 9 609 4 HOH HOH . T 7 HOH A 10 610 25 HOH HOH . T 7 HOH A 11 611 146 HOH HOH . T 7 HOH A 12 612 17 HOH HOH . T 7 HOH A 13 613 128 HOH HOH . T 7 HOH A 14 614 66 HOH HOH . T 7 HOH A 15 615 132 HOH HOH . T 7 HOH A 16 616 223 HOH HOH . T 7 HOH A 17 617 109 HOH HOH . T 7 HOH A 18 618 55 HOH HOH . T 7 HOH A 19 619 37 HOH HOH . T 7 HOH A 20 620 127 HOH HOH . T 7 HOH A 21 621 165 HOH HOH . T 7 HOH A 22 622 107 HOH HOH . T 7 HOH A 23 623 181 HOH HOH . T 7 HOH A 24 624 35 HOH HOH . T 7 HOH A 25 625 62 HOH HOH . T 7 HOH A 26 626 139 HOH HOH . T 7 HOH A 27 627 235 HOH HOH . T 7 HOH A 28 628 196 HOH HOH . T 7 HOH A 29 629 103 HOH HOH . T 7 HOH A 30 630 92 HOH HOH . T 7 HOH A 31 631 15 HOH HOH . T 7 HOH A 32 632 100 HOH HOH . T 7 HOH A 33 633 7 HOH HOH . T 7 HOH A 34 634 85 HOH HOH . T 7 HOH A 35 635 98 HOH HOH . T 7 HOH A 36 636 44 HOH HOH . T 7 HOH A 37 637 192 HOH HOH . T 7 HOH A 38 638 105 HOH HOH . T 7 HOH A 39 639 39 HOH HOH . T 7 HOH A 40 640 219 HOH HOH . T 7 HOH A 41 641 53 HOH HOH . T 7 HOH A 42 642 205 HOH HOH . T 7 HOH A 43 643 6 HOH HOH . T 7 HOH A 44 644 33 HOH HOH . T 7 HOH A 45 645 135 HOH HOH . T 7 HOH A 46 646 89 HOH HOH . T 7 HOH A 47 647 112 HOH HOH . T 7 HOH A 48 648 46 HOH HOH . T 7 HOH A 49 649 217 HOH HOH . T 7 HOH A 50 650 147 HOH HOH . T 7 HOH A 51 651 81 HOH HOH . T 7 HOH A 52 652 45 HOH HOH . T 7 HOH A 53 653 80 HOH HOH . T 7 HOH A 54 654 177 HOH HOH . T 7 HOH A 55 655 193 HOH HOH . T 7 HOH A 56 656 163 HOH HOH . T 7 HOH A 57 657 133 HOH HOH . T 7 HOH A 58 658 174 HOH HOH . T 7 HOH A 59 659 222 HOH HOH . T 7 HOH A 60 660 202 HOH HOH . T 7 HOH A 61 661 172 HOH HOH . T 7 HOH A 62 662 212 HOH HOH . T 7 HOH A 63 663 138 HOH HOH . T 7 HOH A 64 664 243 HOH HOH . T 7 HOH A 65 665 21 HOH HOH . T 7 HOH A 66 666 191 HOH HOH . T 7 HOH A 67 667 171 HOH HOH . T 7 HOH A 68 668 180 HOH HOH . T 7 HOH A 69 669 136 HOH HOH . T 7 HOH A 70 670 74 HOH HOH . T 7 HOH A 71 671 5 HOH HOH . T 7 HOH A 72 672 203 HOH HOH . T 7 HOH A 73 673 32 HOH HOH . T 7 HOH A 74 674 78 HOH HOH . T 7 HOH A 75 675 169 HOH HOH . T 7 HOH A 76 676 130 HOH HOH . T 7 HOH A 77 677 101 HOH HOH . T 7 HOH A 78 678 144 HOH HOH . T 7 HOH A 79 679 47 HOH HOH . T 7 HOH A 80 680 221 HOH HOH . T 7 HOH A 81 681 116 HOH HOH . T 7 HOH A 82 682 59 HOH HOH . T 7 HOH A 83 683 96 HOH HOH . T 7 HOH A 84 684 73 HOH HOH . T 7 HOH A 85 685 42 HOH HOH . T 7 HOH A 86 686 157 HOH HOH . T 7 HOH A 87 687 122 HOH HOH . T 7 HOH A 88 688 117 HOH HOH . T 7 HOH A 89 689 56 HOH HOH . T 7 HOH A 90 690 151 HOH HOH . T 7 HOH A 91 691 93 HOH HOH . T 7 HOH A 92 692 43 HOH HOH . T 7 HOH A 93 693 84 HOH HOH . T 7 HOH A 94 694 90 HOH HOH . T 7 HOH A 95 695 154 HOH HOH . T 7 HOH A 96 696 40 HOH HOH . T 7 HOH A 97 697 60 HOH HOH . T 7 HOH A 98 698 28 HOH HOH . T 7 HOH A 99 699 218 HOH HOH . T 7 HOH A 100 700 29 HOH HOH . T 7 HOH A 101 701 155 HOH HOH . T 7 HOH A 102 702 134 HOH HOH . T 7 HOH A 103 703 145 HOH HOH . T 7 HOH A 104 704 246 HOH HOH . T 7 HOH A 105 705 41 HOH HOH . T 7 HOH A 106 706 13 HOH HOH . T 7 HOH A 107 707 71 HOH HOH . T 7 HOH A 108 708 65 HOH HOH . T 7 HOH A 109 709 22 HOH HOH . T 7 HOH A 110 710 213 HOH HOH . T 7 HOH A 111 711 24 HOH HOH . T 7 HOH A 112 712 115 HOH HOH . T 7 HOH A 113 713 82 HOH HOH . T 7 HOH A 114 714 158 HOH HOH . T 7 HOH A 115 715 230 HOH HOH . T 7 HOH A 116 716 50 HOH HOH . T 7 HOH A 117 717 211 HOH HOH . T 7 HOH A 118 718 114 HOH HOH . U 7 HOH B 1 601 239 HOH HOH . U 7 HOH B 2 602 108 HOH HOH . U 7 HOH B 3 603 106 HOH HOH . U 7 HOH B 4 604 14 HOH HOH . U 7 HOH B 5 605 188 HOH HOH . U 7 HOH B 6 606 242 HOH HOH . U 7 HOH B 7 607 173 HOH HOH . U 7 HOH B 8 608 207 HOH HOH . U 7 HOH B 9 609 168 HOH HOH . U 7 HOH B 10 610 175 HOH HOH . U 7 HOH B 11 611 204 HOH HOH . U 7 HOH B 12 612 18 HOH HOH . U 7 HOH B 13 613 148 HOH HOH . U 7 HOH B 14 614 52 HOH HOH . U 7 HOH B 15 615 185 HOH HOH . U 7 HOH B 16 616 123 HOH HOH . U 7 HOH B 17 617 64 HOH HOH . U 7 HOH B 18 618 10 HOH HOH . U 7 HOH B 19 619 184 HOH HOH . U 7 HOH B 20 620 31 HOH HOH . U 7 HOH B 21 621 226 HOH HOH . U 7 HOH B 22 622 94 HOH HOH . U 7 HOH B 23 623 121 HOH HOH . U 7 HOH B 24 624 26 HOH HOH . U 7 HOH B 25 625 170 HOH HOH . U 7 HOH B 26 626 195 HOH HOH . U 7 HOH B 27 627 58 HOH HOH . U 7 HOH B 28 628 244 HOH HOH . U 7 HOH B 29 629 3 HOH HOH . U 7 HOH B 30 630 86 HOH HOH . U 7 HOH B 31 631 38 HOH HOH . U 7 HOH B 32 632 161 HOH HOH . U 7 HOH B 33 633 232 HOH HOH . U 7 HOH B 34 634 23 HOH HOH . U 7 HOH B 35 635 166 HOH HOH . U 7 HOH B 36 636 156 HOH HOH . U 7 HOH B 37 637 220 HOH HOH . U 7 HOH B 38 638 210 HOH HOH . U 7 HOH B 39 639 224 HOH HOH . U 7 HOH B 40 640 152 HOH HOH . U 7 HOH B 41 641 34 HOH HOH . U 7 HOH B 42 642 72 HOH HOH . U 7 HOH B 43 643 76 HOH HOH . U 7 HOH B 44 644 125 HOH HOH . U 7 HOH B 45 645 51 HOH HOH . U 7 HOH B 46 646 140 HOH HOH . U 7 HOH B 47 647 120 HOH HOH . U 7 HOH B 48 648 209 HOH HOH . U 7 HOH B 49 649 126 HOH HOH . U 7 HOH B 50 650 228 HOH HOH . U 7 HOH B 51 651 201 HOH HOH . U 7 HOH B 52 652 189 HOH HOH . U 7 HOH B 53 653 111 HOH HOH . U 7 HOH B 54 654 54 HOH HOH . U 7 HOH B 55 655 69 HOH HOH . U 7 HOH B 56 656 99 HOH HOH . U 7 HOH B 57 657 16 HOH HOH . U 7 HOH B 58 658 190 HOH HOH . U 7 HOH B 59 659 30 HOH HOH . U 7 HOH B 60 660 199 HOH HOH . U 7 HOH B 61 661 142 HOH HOH . U 7 HOH B 62 662 49 HOH HOH . U 7 HOH B 63 663 68 HOH HOH . U 7 HOH B 64 664 194 HOH HOH . U 7 HOH B 65 665 200 HOH HOH . U 7 HOH B 66 666 143 HOH HOH . U 7 HOH B 67 667 19 HOH HOH . U 7 HOH B 68 668 8 HOH HOH . U 7 HOH B 69 669 149 HOH HOH . U 7 HOH B 70 670 11 HOH HOH . U 7 HOH B 71 671 57 HOH HOH . U 7 HOH B 72 672 27 HOH HOH . U 7 HOH B 73 673 245 HOH HOH . U 7 HOH B 74 674 233 HOH HOH . U 7 HOH B 75 675 197 HOH HOH . U 7 HOH B 76 676 63 HOH HOH . U 7 HOH B 77 677 167 HOH HOH . U 7 HOH B 78 678 79 HOH HOH . U 7 HOH B 79 679 1 HOH HOH . U 7 HOH B 80 680 48 HOH HOH . U 7 HOH B 81 681 237 HOH HOH . U 7 HOH B 82 682 162 HOH HOH . U 7 HOH B 83 683 227 HOH HOH . U 7 HOH B 84 684 118 HOH HOH . U 7 HOH B 85 685 88 HOH HOH . U 7 HOH B 86 686 187 HOH HOH . U 7 HOH B 87 687 113 HOH HOH . U 7 HOH B 88 688 20 HOH HOH . U 7 HOH B 89 689 229 HOH HOH . U 7 HOH B 90 690 150 HOH HOH . U 7 HOH B 91 691 159 HOH HOH . U 7 HOH B 92 692 104 HOH HOH . U 7 HOH B 93 693 67 HOH HOH . U 7 HOH B 94 694 77 HOH HOH . U 7 HOH B 95 695 231 HOH HOH . U 7 HOH B 96 696 131 HOH HOH . U 7 HOH B 97 697 208 HOH HOH . U 7 HOH B 98 698 247 HOH HOH . U 7 HOH B 99 699 141 HOH HOH . U 7 HOH B 100 700 70 HOH HOH . U 7 HOH B 101 701 87 HOH HOH . U 7 HOH B 102 702 97 HOH HOH . U 7 HOH B 103 703 198 HOH HOH . U 7 HOH B 104 704 129 HOH HOH . U 7 HOH B 105 705 124 HOH HOH . U 7 HOH B 106 706 241 HOH HOH . U 7 HOH B 107 707 240 HOH HOH . U 7 HOH B 108 708 153 HOH HOH . U 7 HOH B 109 709 236 HOH HOH . U 7 HOH B 110 710 182 HOH HOH . U 7 HOH B 111 711 183 HOH HOH . U 7 HOH B 112 712 83 HOH HOH . U 7 HOH B 113 713 12 HOH HOH . U 7 HOH B 114 714 36 HOH HOH . U 7 HOH B 115 715 164 HOH HOH . U 7 HOH B 116 716 102 HOH HOH . U 7 HOH B 117 717 160 HOH HOH . U 7 HOH B 118 718 216 HOH HOH . U 7 HOH B 119 719 95 HOH HOH . U 7 HOH B 120 720 234 HOH HOH . U 7 HOH B 121 721 110 HOH HOH . U 7 HOH B 122 722 9 HOH HOH . U 7 HOH B 123 723 225 HOH HOH . U 7 HOH B 124 724 119 HOH HOH . U 7 HOH B 125 725 238 HOH HOH . U 7 HOH B 126 726 176 HOH HOH . U 7 HOH B 127 727 179 HOH HOH . U 7 HOH B 128 728 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HIS . . . C 2 19.805 -4.316 40.752 1 23.79 ? N HIS 501 A 1 HETATM 2 C CA HIS . . . C 2 18.662 -3.791 41.534 1 23.33 ? CA HIS 501 A 1 HETATM 3 C C HIS . . . C 2 17.366 -4.329 40.979 1 23.35 ? C HIS 501 A 1 HETATM 4 O O HIS . . . C 2 17.316 -4.785 39.838 1 23.66 ? O HIS 501 A 1 HETATM 5 C CB HIS . . . C 2 18.645 -2.268 41.481 1 23.55 ? CB HIS 501 A 1 HETATM 6 C CG HIS . . . C 2 19.929 -1.644 41.916 1 24.35 ? CG HIS 501 A 1 HETATM 7 N ND1 HIS . . . C 2 20.356 -1.676 43.223 1 23.78 ? ND1 HIS 501 A 1 HETATM 8 C CD2 HIS . . . C 2 20.896 -1.003 41.216 1 24.59 ? CD2 HIS 501 A 1 HETATM 9 C CE1 HIS . . . C 2 21.522 -1.059 43.315 1 25 ? CE1 HIS 501 A 1 HETATM 10 N NE2 HIS . . . C 2 21.873 -0.642 42.113 1 23.77 ? NE2 HIS 501 A 1 HETATM 11 O OXT HIS . . . C 2 16.348 -4.29 41.649 1 22.28 ? OXT HIS 501 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 47 _model_server_stats.query_time_ms 1144 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 11 #