data_4YRQ # _model_server_result.job_id dcHPny886UfvLLiTtye73g _model_server_result.datetime_utc '2024-11-27 19:17:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yrq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":505}' # _entry.id 4YRQ # _exptl.entry_id 4YRQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.85 _cell.angle_gamma 90 _cell.entry_id 4YRQ _cell.length_a 65.097 _cell.length_b 119.271 _cell.length_c 66.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YRQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 126.905428 0 66.058193 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id S _struct_conn.ptnr1_label_comp_id SO4 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SO4 _struct_conn.ptnr1_auth_seq_id 506 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id G _struct_conn.ptnr2_label_atom_id S _struct_conn.ptnr2_label_comp_id SO4 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SO4 _struct_conn.ptnr2_auth_seq_id 506 _struct_conn.ptnr2_symmetry 2_756 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.906 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 103 n n S C1 DMS sing 104 n n S C2 DMS sing 105 n n C1 H11 DMS sing 106 n n C1 H12 DMS sing 107 n n C1 H13 DMS sing 108 n n C2 H21 DMS sing 109 n n C2 H22 DMS sing 110 n n C2 H23 DMS sing 111 n n # _atom_sites.entry_id 4YRQ _atom_sites.fract_transf_matrix[1][1] 0.015362 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000766 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008384 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015138 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HIS A 1 501 501 HIS HIS . C 3 4JQ A 1 502 1 4JQ 744 . D 4 EDO A 1 503 1 EDO EDO . E 5 DMS A 1 504 2 DMS DMS . F 5 DMS A 1 505 3 DMS DMS . G 6 SO4 A 1 506 4 SO4 SO4 . H 7 HOH A 1 601 242 HOH HOH . H 7 HOH A 2 602 246 HOH HOH . H 7 HOH A 3 603 204 HOH HOH . H 7 HOH A 4 604 8 HOH HOH . H 7 HOH A 5 605 56 HOH HOH . H 7 HOH A 6 606 109 HOH HOH . H 7 HOH A 7 607 59 HOH HOH . H 7 HOH A 8 608 45 HOH HOH . H 7 HOH A 9 609 210 HOH HOH . H 7 HOH A 10 610 172 HOH HOH . H 7 HOH A 11 611 221 HOH HOH . H 7 HOH A 12 612 9 HOH HOH . H 7 HOH A 13 613 156 HOH HOH . H 7 HOH A 14 614 20 HOH HOH . H 7 HOH A 15 615 84 HOH HOH . H 7 HOH A 16 616 173 HOH HOH . H 7 HOH A 17 617 5 HOH HOH . H 7 HOH A 18 618 34 HOH HOH . H 7 HOH A 19 619 223 HOH HOH . H 7 HOH A 20 620 102 HOH HOH . H 7 HOH A 21 621 24 HOH HOH . H 7 HOH A 22 622 95 HOH HOH . H 7 HOH A 23 623 203 HOH HOH . H 7 HOH A 24 624 259 HOH HOH . H 7 HOH A 25 625 278 HOH HOH . H 7 HOH A 26 626 243 HOH HOH . H 7 HOH A 27 627 15 HOH HOH . H 7 HOH A 28 628 91 HOH HOH . H 7 HOH A 29 629 50 HOH HOH . H 7 HOH A 30 630 51 HOH HOH . H 7 HOH A 31 631 245 HOH HOH . H 7 HOH A 32 632 83 HOH HOH . H 7 HOH A 33 633 250 HOH HOH . H 7 HOH A 34 634 185 HOH HOH . H 7 HOH A 35 635 104 HOH HOH . H 7 HOH A 36 636 226 HOH HOH . H 7 HOH A 37 637 114 HOH HOH . H 7 HOH A 38 638 42 HOH HOH . H 7 HOH A 39 639 47 HOH HOH . H 7 HOH A 40 640 75 HOH HOH . H 7 HOH A 41 641 103 HOH HOH . H 7 HOH A 42 642 89 HOH HOH . H 7 HOH A 43 643 139 HOH HOH . H 7 HOH A 44 644 77 HOH HOH . H 7 HOH A 45 645 199 HOH HOH . H 7 HOH A 46 646 19 HOH HOH . H 7 HOH A 47 647 142 HOH HOH . H 7 HOH A 48 648 94 HOH HOH . H 7 HOH A 49 649 37 HOH HOH . H 7 HOH A 50 650 39 HOH HOH . H 7 HOH A 51 651 111 HOH HOH . H 7 HOH A 52 652 205 HOH HOH . H 7 HOH A 53 653 33 HOH HOH . H 7 HOH A 54 654 38 HOH HOH . H 7 HOH A 55 655 217 HOH HOH . H 7 HOH A 56 656 70 HOH HOH . H 7 HOH A 57 657 175 HOH HOH . H 7 HOH A 58 658 220 HOH HOH . H 7 HOH A 59 659 198 HOH HOH . H 7 HOH A 60 660 21 HOH HOH . H 7 HOH A 61 661 78 HOH HOH . H 7 HOH A 62 662 277 HOH HOH . H 7 HOH A 63 663 92 HOH HOH . H 7 HOH A 64 664 74 HOH HOH . H 7 HOH A 65 665 4 HOH HOH . H 7 HOH A 66 666 249 HOH HOH . H 7 HOH A 67 667 22 HOH HOH . H 7 HOH A 68 668 48 HOH HOH . H 7 HOH A 69 669 106 HOH HOH . H 7 HOH A 70 670 235 HOH HOH . H 7 HOH A 71 671 44 HOH HOH . H 7 HOH A 72 672 284 HOH HOH . H 7 HOH A 73 673 186 HOH HOH . H 7 HOH A 74 674 88 HOH HOH . H 7 HOH A 75 675 247 HOH HOH . H 7 HOH A 76 676 27 HOH HOH . H 7 HOH A 77 677 61 HOH HOH . H 7 HOH A 78 678 17 HOH HOH . H 7 HOH A 79 679 181 HOH HOH . H 7 HOH A 80 680 219 HOH HOH . H 7 HOH A 81 681 18 HOH HOH . H 7 HOH A 82 682 16 HOH HOH . H 7 HOH A 83 683 141 HOH HOH . H 7 HOH A 84 684 118 HOH HOH . H 7 HOH A 85 685 192 HOH HOH . H 7 HOH A 86 686 267 HOH HOH . H 7 HOH A 87 687 187 HOH HOH . H 7 HOH A 88 688 76 HOH HOH . H 7 HOH A 89 689 144 HOH HOH . H 7 HOH A 90 690 191 HOH HOH . H 7 HOH A 91 691 63 HOH HOH . H 7 HOH A 92 692 82 HOH HOH . H 7 HOH A 93 693 137 HOH HOH . H 7 HOH A 94 694 79 HOH HOH . H 7 HOH A 95 695 209 HOH HOH . H 7 HOH A 96 696 64 HOH HOH . H 7 HOH A 97 697 6 HOH HOH . H 7 HOH A 98 698 14 HOH HOH . H 7 HOH A 99 699 13 HOH HOH . H 7 HOH A 100 700 60 HOH HOH . H 7 HOH A 101 701 248 HOH HOH . H 7 HOH A 102 702 32 HOH HOH . H 7 HOH A 103 703 53 HOH HOH . H 7 HOH A 104 704 67 HOH HOH . H 7 HOH A 105 705 49 HOH HOH . H 7 HOH A 106 706 183 HOH HOH . H 7 HOH A 107 707 201 HOH HOH . H 7 HOH A 108 708 7 HOH HOH . H 7 HOH A 109 709 200 HOH HOH . H 7 HOH A 110 710 120 HOH HOH . H 7 HOH A 111 711 99 HOH HOH . H 7 HOH A 112 712 211 HOH HOH . H 7 HOH A 113 713 188 HOH HOH . H 7 HOH A 114 714 62 HOH HOH . H 7 HOH A 115 715 229 HOH HOH . H 7 HOH A 116 716 68 HOH HOH . H 7 HOH A 117 717 46 HOH HOH . H 7 HOH A 118 718 215 HOH HOH . H 7 HOH A 119 719 207 HOH HOH . H 7 HOH A 120 720 138 HOH HOH . H 7 HOH A 121 721 101 HOH HOH . H 7 HOH A 122 722 227 HOH HOH . H 7 HOH A 123 723 280 HOH HOH . H 7 HOH A 124 724 107 HOH HOH . H 7 HOH A 125 725 182 HOH HOH . H 7 HOH A 126 726 282 HOH HOH . H 7 HOH A 127 727 195 HOH HOH . H 7 HOH A 128 728 40 HOH HOH . H 7 HOH A 129 729 105 HOH HOH . H 7 HOH A 130 730 265 HOH HOH . H 7 HOH A 131 731 90 HOH HOH . H 7 HOH A 132 732 196 HOH HOH . H 7 HOH A 133 733 190 HOH HOH . H 7 HOH A 134 734 290 HOH HOH . H 7 HOH A 135 735 218 HOH HOH . H 7 HOH A 136 736 35 HOH HOH . H 7 HOH A 137 737 55 HOH HOH . H 7 HOH A 138 738 244 HOH HOH . H 7 HOH A 139 739 97 HOH HOH . H 7 HOH A 140 740 72 HOH HOH . H 7 HOH A 141 741 179 HOH HOH . H 7 HOH A 142 742 184 HOH HOH . H 7 HOH A 143 743 193 HOH HOH . H 7 HOH A 144 744 148 HOH HOH . H 7 HOH A 145 745 57 HOH HOH . H 7 HOH A 146 746 169 HOH HOH . H 7 HOH A 147 747 275 HOH HOH . H 7 HOH A 148 748 36 HOH HOH . H 7 HOH A 149 749 81 HOH HOH . H 7 HOH A 150 750 65 HOH HOH . H 7 HOH A 151 751 233 HOH HOH . H 7 HOH A 152 752 212 HOH HOH . H 7 HOH A 153 753 286 HOH HOH . H 7 HOH A 154 754 276 HOH HOH . H 7 HOH A 155 755 237 HOH HOH . H 7 HOH A 156 756 274 HOH HOH . H 7 HOH A 157 757 287 HOH HOH . H 7 HOH A 158 758 189 HOH HOH . H 7 HOH A 159 759 66 HOH HOH . H 7 HOH A 160 760 31 HOH HOH . H 7 HOH A 161 761 285 HOH HOH . H 7 HOH A 162 762 23 HOH HOH . H 7 HOH A 163 763 288 HOH HOH . H 7 HOH A 164 764 216 HOH HOH . H 7 HOH A 165 765 222 HOH HOH . H 7 HOH A 166 766 194 HOH HOH . H 7 HOH A 167 767 30 HOH HOH . H 7 HOH A 168 768 230 HOH HOH . H 7 HOH A 169 769 206 HOH HOH . H 7 HOH A 170 770 266 HOH HOH . H 7 HOH A 171 771 273 HOH HOH . H 7 HOH A 172 772 125 HOH HOH . H 7 HOH A 173 773 161 HOH HOH . H 7 HOH A 174 774 269 HOH HOH . H 7 HOH A 175 775 85 HOH HOH . H 7 HOH A 176 776 131 HOH HOH . H 7 HOH A 177 777 257 HOH HOH . H 7 HOH A 178 778 268 HOH HOH . H 7 HOH A 179 779 26 HOH HOH . H 7 HOH A 180 780 124 HOH HOH . H 7 HOH A 181 781 108 HOH HOH . H 7 HOH A 182 782 272 HOH HOH . H 7 HOH A 183 783 258 HOH HOH . H 7 HOH A 184 784 289 HOH HOH . H 7 HOH A 185 785 261 HOH HOH . H 7 HOH A 186 786 166 HOH HOH . H 7 HOH A 187 787 281 HOH HOH . H 7 HOH A 188 788 58 HOH HOH . H 7 HOH A 189 789 71 HOH HOH . H 7 HOH A 190 790 251 HOH HOH . H 7 HOH A 191 791 283 HOH HOH . H 7 HOH A 192 792 238 HOH HOH . H 7 HOH A 193 793 270 HOH HOH . H 7 HOH A 194 794 128 HOH HOH . H 7 HOH A 195 795 260 HOH HOH . H 7 HOH A 196 796 143 HOH HOH . H 7 HOH A 197 797 239 HOH HOH . H 7 HOH A 198 798 234 HOH HOH . H 7 HOH A 199 799 279 HOH HOH . H 7 HOH A 200 800 130 HOH HOH . H 7 HOH A 201 801 271 HOH HOH . H 7 HOH A 202 802 129 HOH HOH . H 7 HOH A 203 803 132 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . F 5 66.953 -18.787 17.171 1 50 ? S DMS 505 A 1 HETATM 2 O O DMS . . . F 5 66.553 -20.082 16.594 1 55.16 ? O DMS 505 A 1 HETATM 3 C C1 DMS . . . F 5 67.164 -18.965 18.858 1 50.91 ? C1 DMS 505 A 1 HETATM 4 C C2 DMS . . . F 5 68.568 -18.474 16.703 1 49.73 ? C2 DMS 505 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #