data_4YRR # _model_server_result.job_id 8H5zuNFAZ9WqLWKhL4cm8g _model_server_result.datetime_utc '2024-10-14 23:23:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yrr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":501}' # _entry.id 4YRR # _exptl.entry_id 4YRR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.162 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HISTIDINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.2 _cell.angle_gamma 90 _cell.entry_id 4YRR _cell.length_a 90.007 _cell.length_b 118.433 _cell.length_c 93.809 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YRR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,R 1 1 B,K,L,M,N,O,P,Q,S 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_546 -x+1/2,y-1/2,-z+1 -1 0 0 0 1 0 0 0 -1 43.038913 -59.2165 93.788426 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # _chem_comp.formula 'C6 H10 N3 O2 1' _chem_comp.formula_weight 156.162 _chem_comp.id HIS _chem_comp.mon_nstd_flag y _chem_comp.name HISTIDINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA HIS sing 172 n n N H HIS sing 173 n n N H2 HIS sing 174 n n CA C HIS sing 175 n n CA CB HIS sing 176 n n CA HA HIS sing 177 n n C O HIS doub 178 n n C OXT HIS sing 179 n n CB CG HIS sing 180 n n CB HB2 HIS sing 181 n n CB HB3 HIS sing 182 n n CG ND1 HIS sing 183 n y CG CD2 HIS doub 184 n y ND1 CE1 HIS doub 185 n y ND1 HD1 HIS sing 186 n n CD2 NE2 HIS sing 187 n y CD2 HD2 HIS sing 188 n n CE1 NE2 HIS sing 189 n y CE1 HE1 HIS sing 190 n n NE2 HE2 HIS sing 191 n n OXT HXT HIS sing 192 n n # _atom_sites.entry_id 4YRR _atom_sites.fract_transf_matrix[1][1] 0.01111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000233 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010662 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HIS A 1 501 1 HIS HIS . D 3 691 A 1 502 1 691 691 . E 4 EDO A 1 503 2 EDO EDO . F 5 SO4 A 1 504 3 SO4 SO4 . G 5 SO4 A 1 505 5 SO4 SO4 . H 5 SO4 A 1 506 6 SO4 SO4 . I 6 DMS A 1 507 10 DMS DMS . J 6 DMS A 1 508 12 DMS DMS . K 2 HIS B 1 501 2 HIS HIS . L 3 691 B 1 502 2 691 691 . M 4 EDO B 1 503 1 EDO EDO . N 5 SO4 B 1 504 4 SO4 SO4 . O 5 SO4 B 1 505 7 SO4 SO4 . P 6 DMS B 1 506 11 DMS DMS . Q 6 DMS B 1 507 13 DMS DMS . R 7 HOH A 1 601 403 HOH HOH . R 7 HOH A 2 602 94 HOH HOH . R 7 HOH A 3 603 117 HOH HOH . R 7 HOH A 4 604 507 HOH HOH . R 7 HOH A 5 605 213 HOH HOH . R 7 HOH A 6 606 5 HOH HOH . R 7 HOH A 7 607 528 HOH HOH . R 7 HOH A 8 608 143 HOH HOH . R 7 HOH A 9 609 132 HOH HOH . R 7 HOH A 10 610 46 HOH HOH . R 7 HOH A 11 611 38 HOH HOH . R 7 HOH A 12 612 52 HOH HOH . R 7 HOH A 13 613 55 HOH HOH . R 7 HOH A 14 614 442 HOH HOH . R 7 HOH A 15 615 510 HOH HOH . R 7 HOH A 16 616 69 HOH HOH . R 7 HOH A 17 617 59 HOH HOH . R 7 HOH A 18 618 471 HOH HOH . R 7 HOH A 19 619 506 HOH HOH . R 7 HOH A 20 620 177 HOH HOH . R 7 HOH A 21 621 22 HOH HOH . R 7 HOH A 22 622 398 HOH HOH . R 7 HOH A 23 623 64 HOH HOH . R 7 HOH A 24 624 57 HOH HOH . R 7 HOH A 25 625 109 HOH HOH . R 7 HOH A 26 626 516 HOH HOH . R 7 HOH A 27 627 99 HOH HOH . R 7 HOH A 28 628 144 HOH HOH . R 7 HOH A 29 629 50 HOH HOH . R 7 HOH A 30 630 261 HOH HOH . R 7 HOH A 31 631 204 HOH HOH . R 7 HOH A 32 632 19 HOH HOH . R 7 HOH A 33 633 323 HOH HOH . R 7 HOH A 34 634 71 HOH HOH . R 7 HOH A 35 635 96 HOH HOH . R 7 HOH A 36 636 47 HOH HOH . R 7 HOH A 37 637 501 HOH HOH . R 7 HOH A 38 638 502 HOH HOH . R 7 HOH A 39 639 31 HOH HOH . R 7 HOH A 40 640 53 HOH HOH . R 7 HOH A 41 641 23 HOH HOH . R 7 HOH A 42 642 245 HOH HOH . R 7 HOH A 43 643 18 HOH HOH . R 7 HOH A 44 644 530 HOH HOH . R 7 HOH A 45 645 468 HOH HOH . R 7 HOH A 46 646 186 HOH HOH . R 7 HOH A 47 647 503 HOH HOH . R 7 HOH A 48 648 15 HOH HOH . R 7 HOH A 49 649 526 HOH HOH . R 7 HOH A 50 650 235 HOH HOH . R 7 HOH A 51 651 404 HOH HOH . R 7 HOH A 52 652 136 HOH HOH . R 7 HOH A 53 653 17 HOH HOH . R 7 HOH A 54 654 389 HOH HOH . R 7 HOH A 55 655 474 HOH HOH . R 7 HOH A 56 656 58 HOH HOH . R 7 HOH A 57 657 195 HOH HOH . R 7 HOH A 58 658 61 HOH HOH . R 7 HOH A 59 659 80 HOH HOH . R 7 HOH A 60 660 155 HOH HOH . R 7 HOH A 61 661 515 HOH HOH . R 7 HOH A 62 662 133 HOH HOH . R 7 HOH A 63 663 74 HOH HOH . R 7 HOH A 64 664 34 HOH HOH . R 7 HOH A 65 665 466 HOH HOH . R 7 HOH A 66 666 390 HOH HOH . R 7 HOH A 67 667 156 HOH HOH . R 7 HOH A 68 668 218 HOH HOH . R 7 HOH A 69 669 271 HOH HOH . R 7 HOH A 70 670 236 HOH HOH . R 7 HOH A 71 671 228 HOH HOH . R 7 HOH A 72 672 458 HOH HOH . R 7 HOH A 73 673 72 HOH HOH . R 7 HOH A 74 674 518 HOH HOH . R 7 HOH A 75 675 77 HOH HOH . R 7 HOH A 76 676 464 HOH HOH . R 7 HOH A 77 677 134 HOH HOH . R 7 HOH A 78 678 521 HOH HOH . R 7 HOH A 79 679 122 HOH HOH . R 7 HOH A 80 680 65 HOH HOH . R 7 HOH A 81 681 425 HOH HOH . R 7 HOH A 82 682 172 HOH HOH . R 7 HOH A 83 683 407 HOH HOH . R 7 HOH A 84 684 522 HOH HOH . R 7 HOH A 85 685 36 HOH HOH . R 7 HOH A 86 686 12 HOH HOH . R 7 HOH A 87 687 504 HOH HOH . R 7 HOH A 88 688 89 HOH HOH . R 7 HOH A 89 689 452 HOH HOH . R 7 HOH A 90 690 9 HOH HOH . R 7 HOH A 91 691 20 HOH HOH . R 7 HOH A 92 692 463 HOH HOH . R 7 HOH A 93 693 146 HOH HOH . R 7 HOH A 94 694 480 HOH HOH . R 7 HOH A 95 695 509 HOH HOH . R 7 HOH A 96 696 8 HOH HOH . R 7 HOH A 97 697 100 HOH HOH . R 7 HOH A 98 698 443 HOH HOH . R 7 HOH A 99 699 364 HOH HOH . R 7 HOH A 100 700 431 HOH HOH . R 7 HOH A 101 701 365 HOH HOH . R 7 HOH A 102 702 465 HOH HOH . R 7 HOH A 103 703 512 HOH HOH . R 7 HOH A 104 704 500 HOH HOH . R 7 HOH A 105 705 523 HOH HOH . R 7 HOH A 106 706 83 HOH HOH . R 7 HOH A 107 707 380 HOH HOH . R 7 HOH A 108 708 505 HOH HOH . R 7 HOH A 109 709 514 HOH HOH . S 7 HOH B 1 601 520 HOH HOH . S 7 HOH B 2 602 457 HOH HOH . S 7 HOH B 3 603 399 HOH HOH . S 7 HOH B 4 604 189 HOH HOH . S 7 HOH B 5 605 508 HOH HOH . S 7 HOH B 6 606 513 HOH HOH . S 7 HOH B 7 607 498 HOH HOH . S 7 HOH B 8 608 173 HOH HOH . S 7 HOH B 9 609 282 HOH HOH . S 7 HOH B 10 610 214 HOH HOH . S 7 HOH B 11 611 81 HOH HOH . S 7 HOH B 12 612 145 HOH HOH . S 7 HOH B 13 613 30 HOH HOH . S 7 HOH B 14 614 37 HOH HOH . S 7 HOH B 15 615 82 HOH HOH . S 7 HOH B 16 616 392 HOH HOH . S 7 HOH B 17 617 153 HOH HOH . S 7 HOH B 18 618 28 HOH HOH . S 7 HOH B 19 619 84 HOH HOH . S 7 HOH B 20 620 51 HOH HOH . S 7 HOH B 21 621 70 HOH HOH . S 7 HOH B 22 622 73 HOH HOH . S 7 HOH B 23 623 26 HOH HOH . S 7 HOH B 24 624 40 HOH HOH . S 7 HOH B 25 625 130 HOH HOH . S 7 HOH B 26 626 391 HOH HOH . S 7 HOH B 27 627 125 HOH HOH . S 7 HOH B 28 628 393 HOH HOH . S 7 HOH B 29 629 67 HOH HOH . S 7 HOH B 30 630 300 HOH HOH . S 7 HOH B 31 631 43 HOH HOH . S 7 HOH B 32 632 267 HOH HOH . S 7 HOH B 33 633 35 HOH HOH . S 7 HOH B 34 634 469 HOH HOH . S 7 HOH B 35 635 499 HOH HOH . S 7 HOH B 36 636 494 HOH HOH . S 7 HOH B 37 637 14 HOH HOH . S 7 HOH B 38 638 495 HOH HOH . S 7 HOH B 39 639 93 HOH HOH . S 7 HOH B 40 640 27 HOH HOH . S 7 HOH B 41 641 343 HOH HOH . S 7 HOH B 42 642 29 HOH HOH . S 7 HOH B 43 643 25 HOH HOH . S 7 HOH B 44 644 253 HOH HOH . S 7 HOH B 45 645 481 HOH HOH . S 7 HOH B 46 646 62 HOH HOH . S 7 HOH B 47 647 479 HOH HOH . S 7 HOH B 48 648 105 HOH HOH . S 7 HOH B 49 649 488 HOH HOH . S 7 HOH B 50 650 524 HOH HOH . S 7 HOH B 51 651 157 HOH HOH . S 7 HOH B 52 652 249 HOH HOH . S 7 HOH B 53 653 413 HOH HOH . S 7 HOH B 54 654 90 HOH HOH . S 7 HOH B 55 655 7 HOH HOH . S 7 HOH B 56 656 24 HOH HOH . S 7 HOH B 57 657 409 HOH HOH . S 7 HOH B 58 658 39 HOH HOH . S 7 HOH B 59 659 384 HOH HOH . S 7 HOH B 60 660 519 HOH HOH . S 7 HOH B 61 661 32 HOH HOH . S 7 HOH B 62 662 473 HOH HOH . S 7 HOH B 63 663 525 HOH HOH . S 7 HOH B 64 664 16 HOH HOH . S 7 HOH B 65 665 517 HOH HOH . S 7 HOH B 66 666 310 HOH HOH . S 7 HOH B 67 667 11 HOH HOH . S 7 HOH B 68 668 400 HOH HOH . S 7 HOH B 69 669 394 HOH HOH . S 7 HOH B 70 670 477 HOH HOH . S 7 HOH B 71 671 483 HOH HOH . S 7 HOH B 72 672 326 HOH HOH . S 7 HOH B 73 673 493 HOH HOH . S 7 HOH B 74 674 529 HOH HOH . S 7 HOH B 75 675 279 HOH HOH . S 7 HOH B 76 676 430 HOH HOH . S 7 HOH B 77 677 86 HOH HOH . S 7 HOH B 78 678 315 HOH HOH . S 7 HOH B 79 679 462 HOH HOH . S 7 HOH B 80 680 467 HOH HOH . S 7 HOH B 81 681 406 HOH HOH . S 7 HOH B 82 682 149 HOH HOH . S 7 HOH B 83 683 410 HOH HOH . S 7 HOH B 84 684 475 HOH HOH . S 7 HOH B 85 685 416 HOH HOH . S 7 HOH B 86 686 436 HOH HOH . S 7 HOH B 87 687 461 HOH HOH . S 7 HOH B 88 688 48 HOH HOH . S 7 HOH B 89 689 92 HOH HOH . S 7 HOH B 90 690 126 HOH HOH . S 7 HOH B 91 691 42 HOH HOH . S 7 HOH B 92 692 482 HOH HOH . S 7 HOH B 93 693 438 HOH HOH . S 7 HOH B 94 694 1 HOH HOH . S 7 HOH B 95 695 486 HOH HOH . S 7 HOH B 96 696 314 HOH HOH . S 7 HOH B 97 697 496 HOH HOH . S 7 HOH B 98 698 54 HOH HOH . S 7 HOH B 99 699 127 HOH HOH . S 7 HOH B 100 700 10 HOH HOH . S 7 HOH B 101 701 3 HOH HOH . S 7 HOH B 102 702 428 HOH HOH . S 7 HOH B 103 703 478 HOH HOH . S 7 HOH B 104 704 128 HOH HOH . S 7 HOH B 105 705 476 HOH HOH . S 7 HOH B 106 706 366 HOH HOH . S 7 HOH B 107 707 511 HOH HOH . S 7 HOH B 108 708 2 HOH HOH . S 7 HOH B 109 709 470 HOH HOH . S 7 HOH B 110 710 484 HOH HOH . S 7 HOH B 111 711 489 HOH HOH . S 7 HOH B 112 712 527 HOH HOH . S 7 HOH B 113 713 497 HOH HOH . S 7 HOH B 114 714 408 HOH HOH . S 7 HOH B 115 715 383 HOH HOH . S 7 HOH B 116 716 373 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N HIS . . . K 2 19.121 54.122 86.947 1 25.7 ? N HIS 501 B 1 HETATM 2 C CA HIS . . . K 2 17.9 54.515 87.732 1 26.34 ? CA HIS 501 B 1 HETATM 3 C C HIS . . . K 2 16.641 53.964 87.088 1 27.64 ? C HIS 501 B 1 HETATM 4 O O HIS . . . K 2 16.7 53.455 85.959 1 29.48 ? O HIS 501 B 1 HETATM 5 C CB HIS . . . K 2 17.823 56.046 87.885 1 25.27 ? CB HIS 501 B 1 HETATM 6 C CG HIS . . . K 2 19.106 56.632 88.359 1 23.81 ? CG HIS 501 B 1 HETATM 7 N ND1 HIS . . . K 2 19.538 56.501 89.657 1 24.78 ? ND1 HIS 501 B 1 HETATM 8 C CD2 HIS . . . K 2 20.106 57.245 87.69 1 23.77 ? CD2 HIS 501 B 1 HETATM 9 C CE1 HIS . . . K 2 20.727 57.061 89.784 1 24.75 ? CE1 HIS 501 B 1 HETATM 10 N NE2 HIS . . . K 2 21.095 57.517 88.6 1 24.95 ? NE2 HIS 501 B 1 HETATM 11 O OXT HIS . . . K 2 15.564 53.995 87.696 1 27.43 ? OXT HIS 501 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 11 #