data_4YRT
#
_model_server_result.job_id            aSs78k-dHofsVA6phzfmdw 
_model_server_result.datetime_utc      '2024-11-23 20:58:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yrt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    4YRT 
#
_exptl.entry_id    4YRT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.248 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(5-hydroxynaphthalen-2-yl)propanamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          93.39 
_cell.angle_gamma         90 
_cell.entry_id            4YRT 
_cell.length_a            65.432 
_cell.length_b            119.34 
_cell.length_c            66.302 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YRT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_756 -x+2,y,-z+1 -1 0 0 0 1 0 0 0 -1 126.94342 0 66.185982 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   covale 
_struct_conn.details                        ? 
_struct_conn.id                             covale1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             343 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              365 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            C 
_struct_conn.ptnr2_label_atom_id            C9 
_struct_conn.ptnr2_label_comp_id            781 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             781 
_struct_conn.ptnr2_auth_seq_id              502 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                1.775 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C13 H13 N O2' 
_chem_comp.formula_weight    215.248 
_chem_comp.id                781 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(5-hydroxynaphthalen-2-yl)propanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'N-(5-hydroxynaphthalen-2-yl)prop-2-enamide, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C9 C8 781 sing 1 n n 
C8 C7 781 sing 2 n n 
C7 O1 781 doub 3 n n 
C7 N 781 sing 4 n n 
N C6 781 sing 5 n n 
C10 C6 781 doub 6 n y 
C10 C11 781 sing 7 n y 
C6 C5 781 sing 8 n y 
C11 C12 781 doub 9 n y 
C5 C4 781 doub 10 n y 
C12 C4 781 sing 11 n y 
C12 C 781 sing 12 n y 
O C 781 sing 13 n n 
C4 C3 781 sing 14 n y 
C C1 781 doub 15 n y 
C3 C2 781 doub 16 n y 
C1 C2 781 sing 17 n y 
C8 H1 781 sing 18 n n 
C8 H2 781 sing 19 n n 
C9 H3 781 sing 20 n n 
C9 H4 781 sing 21 n n 
C9 H5 781 sing 22 n n 
N H6 781 sing 23 n n 
C5 H7 781 sing 24 n n 
C3 H8 781 sing 25 n n 
C2 H9 781 sing 26 n n 
C1 H10 781 sing 27 n n 
O H11 781 sing 28 n n 
C11 H12 781 sing 29 n n 
C10 H13 781 sing 30 n n 
#
_atom_sites.entry_id                     4YRT 
_atom_sites.fract_transf_matrix[1][1]    0.015283 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000905 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.015109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HIS A 1 501 501 HIS HIS . 
C 3 781 A 1 502 1 781 781 . 
D 4 SO4 A 1 503 1 SO4 SO4 . 
E 5 EDO A 1 504 2 EDO EDO . 
F 6 HOH A 1 601 213 HOH HOH . 
F 6 HOH A 2 602 205 HOH HOH . 
F 6 HOH A 3 603 211 HOH HOH . 
F 6 HOH A 4 604 166 HOH HOH . 
F 6 HOH A 5 605 1 HOH HOH . 
F 6 HOH A 6 606 6 HOH HOH . 
F 6 HOH A 7 607 148 HOH HOH . 
F 6 HOH A 8 608 186 HOH HOH . 
F 6 HOH A 9 609 132 HOH HOH . 
F 6 HOH A 10 610 84 HOH HOH . 
F 6 HOH A 11 611 33 HOH HOH . 
F 6 HOH A 12 612 217 HOH HOH . 
F 6 HOH A 13 613 97 HOH HOH . 
F 6 HOH A 14 614 26 HOH HOH . 
F 6 HOH A 15 615 147 HOH HOH . 
F 6 HOH A 16 616 144 HOH HOH . 
F 6 HOH A 17 617 38 HOH HOH . 
F 6 HOH A 18 618 32 HOH HOH . 
F 6 HOH A 19 619 206 HOH HOH . 
F 6 HOH A 20 620 105 HOH HOH . 
F 6 HOH A 21 621 133 HOH HOH . 
F 6 HOH A 22 622 75 HOH HOH . 
F 6 HOH A 23 623 60 HOH HOH . 
F 6 HOH A 24 624 131 HOH HOH . 
F 6 HOH A 25 625 128 HOH HOH . 
F 6 HOH A 26 626 169 HOH HOH . 
F 6 HOH A 27 627 88 HOH HOH . 
F 6 HOH A 28 628 47 HOH HOH . 
F 6 HOH A 29 629 123 HOH HOH . 
F 6 HOH A 30 630 207 HOH HOH . 
F 6 HOH A 31 631 90 HOH HOH . 
F 6 HOH A 32 632 50 HOH HOH . 
F 6 HOH A 33 633 171 HOH HOH . 
F 6 HOH A 34 634 16 HOH HOH . 
F 6 HOH A 35 635 40 HOH HOH . 
F 6 HOH A 36 636 191 HOH HOH . 
F 6 HOH A 37 637 210 HOH HOH . 
F 6 HOH A 38 638 5 HOH HOH . 
F 6 HOH A 39 639 17 HOH HOH . 
F 6 HOH A 40 640 21 HOH HOH . 
F 6 HOH A 41 641 81 HOH HOH . 
F 6 HOH A 42 642 28 HOH HOH . 
F 6 HOH A 43 643 201 HOH HOH . 
F 6 HOH A 44 644 82 HOH HOH . 
F 6 HOH A 45 645 161 HOH HOH . 
F 6 HOH A 46 646 142 HOH HOH . 
F 6 HOH A 47 647 202 HOH HOH . 
F 6 HOH A 48 648 27 HOH HOH . 
F 6 HOH A 49 649 168 HOH HOH . 
F 6 HOH A 50 650 37 HOH HOH . 
F 6 HOH A 51 651 176 HOH HOH . 
F 6 HOH A 52 652 149 HOH HOH . 
F 6 HOH A 53 653 100 HOH HOH . 
F 6 HOH A 54 654 61 HOH HOH . 
F 6 HOH A 55 655 65 HOH HOH . 
F 6 HOH A 56 656 102 HOH HOH . 
F 6 HOH A 57 657 31 HOH HOH . 
F 6 HOH A 58 658 12 HOH HOH . 
F 6 HOH A 59 659 89 HOH HOH . 
F 6 HOH A 60 660 143 HOH HOH . 
F 6 HOH A 61 661 19 HOH HOH . 
F 6 HOH A 62 662 184 HOH HOH . 
F 6 HOH A 63 663 93 HOH HOH . 
F 6 HOH A 64 664 69 HOH HOH . 
F 6 HOH A 65 665 83 HOH HOH . 
F 6 HOH A 66 666 130 HOH HOH . 
F 6 HOH A 67 667 52 HOH HOH . 
F 6 HOH A 68 668 125 HOH HOH . 
F 6 HOH A 69 669 44 HOH HOH . 
F 6 HOH A 70 670 42 HOH HOH . 
F 6 HOH A 71 671 10 HOH HOH . 
F 6 HOH A 72 672 7 HOH HOH . 
F 6 HOH A 73 673 66 HOH HOH . 
F 6 HOH A 74 674 77 HOH HOH . 
F 6 HOH A 75 675 23 HOH HOH . 
F 6 HOH A 76 676 3 HOH HOH . 
F 6 HOH A 77 677 92 HOH HOH . 
F 6 HOH A 78 678 116 HOH HOH . 
F 6 HOH A 79 679 167 HOH HOH . 
F 6 HOH A 80 680 73 HOH HOH . 
F 6 HOH A 81 681 59 HOH HOH . 
F 6 HOH A 82 682 18 HOH HOH . 
F 6 HOH A 83 683 45 HOH HOH . 
F 6 HOH A 84 684 119 HOH HOH . 
F 6 HOH A 85 685 178 HOH HOH . 
F 6 HOH A 86 686 91 HOH HOH . 
F 6 HOH A 87 687 68 HOH HOH . 
F 6 HOH A 88 688 113 HOH HOH . 
F 6 HOH A 89 689 54 HOH HOH . 
F 6 HOH A 90 690 152 HOH HOH . 
F 6 HOH A 91 691 80 HOH HOH . 
F 6 HOH A 92 692 39 HOH HOH . 
F 6 HOH A 93 693 86 HOH HOH . 
F 6 HOH A 94 694 182 HOH HOH . 
F 6 HOH A 95 695 14 HOH HOH . 
F 6 HOH A 96 696 165 HOH HOH . 
F 6 HOH A 97 697 115 HOH HOH . 
F 6 HOH A 98 698 104 HOH HOH . 
F 6 HOH A 99 699 134 HOH HOH . 
F 6 HOH A 100 700 2 HOH HOH . 
F 6 HOH A 101 701 43 HOH HOH . 
F 6 HOH A 102 702 71 HOH HOH . 
F 6 HOH A 103 703 41 HOH HOH . 
F 6 HOH A 104 704 57 HOH HOH . 
F 6 HOH A 105 705 181 HOH HOH . 
F 6 HOH A 106 706 58 HOH HOH . 
F 6 HOH A 107 707 11 HOH HOH . 
F 6 HOH A 108 708 36 HOH HOH . 
F 6 HOH A 109 709 141 HOH HOH . 
F 6 HOH A 110 710 204 HOH HOH . 
F 6 HOH A 111 711 13 HOH HOH . 
F 6 HOH A 112 712 15 HOH HOH . 
F 6 HOH A 113 713 156 HOH HOH . 
F 6 HOH A 114 714 25 HOH HOH . 
F 6 HOH A 115 715 78 HOH HOH . 
F 6 HOH A 116 716 51 HOH HOH . 
F 6 HOH A 117 717 135 HOH HOH . 
F 6 HOH A 118 718 179 HOH HOH . 
F 6 HOH A 119 719 145 HOH HOH . 
F 6 HOH A 120 720 114 HOH HOH . 
F 6 HOH A 121 721 117 HOH HOH . 
F 6 HOH A 122 722 180 HOH HOH . 
F 6 HOH A 123 723 53 HOH HOH . 
F 6 HOH A 124 724 70 HOH HOH . 
F 6 HOH A 125 725 137 HOH HOH . 
F 6 HOH A 126 726 122 HOH HOH . 
F 6 HOH A 127 727 72 HOH HOH . 
F 6 HOH A 128 728 188 HOH HOH . 
F 6 HOH A 129 729 172 HOH HOH . 
F 6 HOH A 130 730 29 HOH HOH . 
F 6 HOH A 131 731 48 HOH HOH . 
F 6 HOH A 132 732 199 HOH HOH . 
F 6 HOH A 133 733 103 HOH HOH . 
F 6 HOH A 134 734 63 HOH HOH . 
F 6 HOH A 135 735 34 HOH HOH . 
F 6 HOH A 136 736 174 HOH HOH . 
F 6 HOH A 137 737 187 HOH HOH . 
F 6 HOH A 138 738 98 HOH HOH . 
F 6 HOH A 139 739 94 HOH HOH . 
F 6 HOH A 140 740 101 HOH HOH . 
F 6 HOH A 141 741 67 HOH HOH . 
F 6 HOH A 142 742 4 HOH HOH . 
F 6 HOH A 143 743 136 HOH HOH . 
F 6 HOH A 144 744 64 HOH HOH . 
F 6 HOH A 145 745 138 HOH HOH . 
F 6 HOH A 146 746 189 HOH HOH . 
F 6 HOH A 147 747 173 HOH HOH . 
F 6 HOH A 148 748 203 HOH HOH . 
F 6 HOH A 149 749 159 HOH HOH . 
F 6 HOH A 150 750 46 HOH HOH . 
F 6 HOH A 151 751 154 HOH HOH . 
F 6 HOH A 152 752 55 HOH HOH . 
F 6 HOH A 153 753 155 HOH HOH . 
F 6 HOH A 154 754 9 HOH HOH . 
F 6 HOH A 155 755 56 HOH HOH . 
F 6 HOH A 156 756 74 HOH HOH . 
F 6 HOH A 157 757 95 HOH HOH . 
F 6 HOH A 158 758 140 HOH HOH . 
F 6 HOH A 159 759 209 HOH HOH . 
F 6 HOH A 160 760 175 HOH HOH . 
F 6 HOH A 161 761 197 HOH HOH . 
F 6 HOH A 162 762 120 HOH HOH . 
F 6 HOH A 163 763 79 HOH HOH . 
F 6 HOH A 164 764 196 HOH HOH . 
F 6 HOH A 165 765 164 HOH HOH . 
F 6 HOH A 166 766 183 HOH HOH . 
F 6 HOH A 167 767 30 HOH HOH . 
F 6 HOH A 168 768 157 HOH HOH . 
F 6 HOH A 169 769 214 HOH HOH . 
F 6 HOH A 170 770 170 HOH HOH . 
F 6 HOH A 171 771 185 HOH HOH . 
F 6 HOH A 172 772 160 HOH HOH . 
F 6 HOH A 173 773 212 HOH HOH . 
F 6 HOH A 174 774 127 HOH HOH . 
F 6 HOH A 175 775 139 HOH HOH . 
F 6 HOH A 176 776 146 HOH HOH . 
F 6 HOH A 177 777 106 HOH HOH . 
F 6 HOH A 178 778 129 HOH HOH . 
F 6 HOH A 179 779 35 HOH HOH . 
F 6 HOH A 180 780 107 HOH HOH . 
F 6 HOH A 181 781 99 HOH HOH . 
F 6 HOH A 182 782 76 HOH HOH . 
F 6 HOH A 183 783 20 HOH HOH . 
F 6 HOH A 184 784 216 HOH HOH . 
F 6 HOH A 185 785 162 HOH HOH . 
F 6 HOH A 186 786 24 HOH HOH . 
F 6 HOH A 187 787 121 HOH HOH . 
F 6 HOH A 188 788 151 HOH HOH . 
F 6 HOH A 189 789 124 HOH HOH . 
F 6 HOH A 190 790 8 HOH HOH . 
F 6 HOH A 191 791 177 HOH HOH . 
F 6 HOH A 192 792 150 HOH HOH . 
F 6 HOH A 193 793 163 HOH HOH . 
F 6 HOH A 194 794 111 HOH HOH . 
F 6 HOH A 195 795 22 HOH HOH . 
F 6 HOH A 196 796 190 HOH HOH . 
F 6 HOH A 197 797 87 HOH HOH . 
F 6 HOH A 198 798 192 HOH HOH . 
F 6 HOH A 199 799 96 HOH HOH . 
F 6 HOH A 200 800 193 HOH HOH . 
F 6 HOH A 201 801 126 HOH HOH . 
F 6 HOH A 202 802 62 HOH HOH . 
F 6 HOH A 203 803 215 HOH HOH . 
F 6 HOH A 204 804 85 HOH HOH . 
F 6 HOH A 205 805 200 HOH HOH . 
F 6 HOH A 206 806 198 HOH HOH . 
F 6 HOH A 207 807 49 HOH HOH . 
F 6 HOH A 208 808 208 HOH HOH . 
F 6 HOH A 209 809 118 HOH HOH . 
F 6 HOH A 210 810 108 HOH HOH . 
F 6 HOH A 211 811 158 HOH HOH . 
F 6 HOH A 212 812 110 HOH HOH . 
F 6 HOH A 213 813 194 HOH HOH . 
F 6 HOH A 214 814 195 HOH HOH . 
F 6 HOH A 215 815 218 HOH HOH . 
F 6 HOH A 216 816 109 HOH HOH . 
F 6 HOH A 217 817 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O1 781 . . . C 3 62.053 4.179 15.364 1 35.39 ? O1 781 502 A 1 
HETATM 2 C C7 781 . . . C 3 61.185 5.055 15.324 1 33.63 ? C7 781 502 A 1 
HETATM 3 C C8 781 . . . C 3 59.864 4.793 14.605 1 31.28 ? C8 781 502 A 1 
HETATM 4 C C9 781 . . . C 3 59.507 3.309 14.586 1 30.24 ? C9 781 502 A 1 
HETATM 5 N N 781 . . . C 3 61.091 5.991 16.263 1 33.96 ? N 781 502 A 1 
HETATM 6 C C6 781 . . . C 3 62.152 6.509 16.948 1 32.88 ? C6 781 502 A 1 
HETATM 7 C C5 781 . . . C 3 61.88 6.967 18.236 1 32.06 ? C5 781 502 A 1 
HETATM 8 C C4 781 . . . C 3 62.878 7.523 19.026 1 32.23 ? C4 781 502 A 1 
HETATM 9 C C3 781 . . . C 3 62.551 7.964 20.31 1 31.51 ? C3 781 502 A 1 
HETATM 10 C C2 781 . . . C 3 63.533 8.53 21.124 1 31.41 ? C2 781 502 A 1 
HETATM 11 C C1 781 . . . C 3 64.844 8.652 20.642 1 31.74 ? C1 781 502 A 1 
HETATM 12 C C 781 . . . C 3 65.159 8.215 19.343 1 32.14 ? C 781 502 A 1 
HETATM 13 O O 781 . . . C 3 66.434 8.337 18.887 1 31.06 ? O 781 502 A 1 
HETATM 14 C C12 781 . . . C 3 64.178 7.648 18.529 1 31.25 ? C12 781 502 A 1 
HETATM 15 C C11 781 . . . C 3 64.468 7.194 17.236 1 32.57 ? C11 781 502 A 1 
HETATM 16 C C10 781 . . . C 3 63.457 6.624 16.443 1 33.29 ? C10 781 502 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           610 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           16 
#