data_4YRZ
#
_model_server_result.job_id            m7nKhQENAT4nsHjGSC7jhw 
_model_server_result.datetime_utc      '2024-11-12 20:43:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yrz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    4YRZ 
#
_exptl.entry_id    4YRZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              192.94 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            L-xylulofuranose-1,2-borate 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YRZ 
_cell.length_a            74.5 
_cell.length_b            85.036 
_cell.length_c            130.98 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YRZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C5 H10 B O7 -1' 
_chem_comp.formula_weight    192.94 
_chem_comp.id                A2B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              L-xylulofuranose-1,2-borate 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C6 O5 A2B sing 1 n n 
C6 C7 A2B sing 2 n n 
O12 C7 A2B sing 3 n n 
O5 C4 A2B sing 4 n n 
C7 C8 A2B sing 5 n n 
O13 C11 A2B sing 6 n n 
C11 C4 A2B sing 7 n n 
C4 C8 A2B sing 8 n n 
C4 O3 A2B sing 9 n n 
C8 O1 A2B sing 10 n n 
O3 B A2B sing 11 n n 
O1 B A2B sing 12 n n 
B O10 A2B sing 13 n n 
B O9 A2B sing 14 n n 
O13 H1 A2B sing 15 n n 
C8 H2 A2B sing 16 n n 
C7 H3 A2B sing 17 n n 
O12 H4 A2B sing 18 n n 
C6 H5 A2B sing 19 n n 
C6 H6 A2B sing 20 n n 
C11 H7 A2B sing 21 n n 
C11 H8 A2B sing 22 n n 
O10 H9 A2B sing 23 n n 
O9 H10 A2B sing 24 n n 
#
_atom_sites.entry_id                     4YRZ 
_atom_sites.fract_transf_matrix[1][1]    0.013423 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01176 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007635 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A2B A 1 401 1 A2B A2B . 
D 2 A2B B 1 401 1 A2B A2B . 
E 3 HOH A 1 501 85 HOH HOH . 
E 3 HOH A 2 502 206 HOH HOH . 
E 3 HOH A 3 503 97 HOH HOH . 
E 3 HOH A 4 504 133 HOH HOH . 
E 3 HOH A 5 505 233 HOH HOH . 
E 3 HOH A 6 506 130 HOH HOH . 
E 3 HOH A 7 507 145 HOH HOH . 
E 3 HOH A 8 508 132 HOH HOH . 
E 3 HOH A 9 509 46 HOH HOH . 
E 3 HOH A 10 510 236 HOH HOH . 
E 3 HOH A 11 511 98 HOH HOH . 
E 3 HOH A 12 512 90 HOH HOH . 
E 3 HOH A 13 513 7 HOH HOH . 
E 3 HOH A 14 514 209 HOH HOH . 
E 3 HOH A 15 515 58 HOH HOH . 
E 3 HOH A 16 516 8 HOH HOH . 
E 3 HOH A 17 517 1 HOH HOH . 
E 3 HOH A 18 518 31 HOH HOH . 
E 3 HOH A 19 519 203 HOH HOH . 
E 3 HOH A 20 520 2 HOH HOH . 
E 3 HOH A 21 521 35 HOH HOH . 
E 3 HOH A 22 522 189 HOH HOH . 
E 3 HOH A 23 523 72 HOH HOH . 
E 3 HOH A 24 524 11 HOH HOH . 
E 3 HOH A 25 525 3 HOH HOH . 
E 3 HOH A 26 526 146 HOH HOH . 
E 3 HOH A 27 527 100 HOH HOH . 
E 3 HOH A 28 528 20 HOH HOH . 
E 3 HOH A 29 529 101 HOH HOH . 
E 3 HOH A 30 530 21 HOH HOH . 
E 3 HOH A 31 531 235 HOH HOH . 
E 3 HOH A 32 532 131 HOH HOH . 
E 3 HOH A 33 533 137 HOH HOH . 
E 3 HOH A 34 534 13 HOH HOH . 
E 3 HOH A 35 535 19 HOH HOH . 
E 3 HOH A 36 536 121 HOH HOH . 
E 3 HOH A 37 537 110 HOH HOH . 
E 3 HOH A 38 538 76 HOH HOH . 
E 3 HOH A 39 539 55 HOH HOH . 
E 3 HOH A 40 540 71 HOH HOH . 
E 3 HOH A 41 541 240 HOH HOH . 
E 3 HOH A 42 542 47 HOH HOH . 
E 3 HOH A 43 543 143 HOH HOH . 
E 3 HOH A 44 544 187 HOH HOH . 
E 3 HOH A 45 545 234 HOH HOH . 
E 3 HOH A 46 546 36 HOH HOH . 
E 3 HOH A 47 547 32 HOH HOH . 
E 3 HOH A 48 548 60 HOH HOH . 
E 3 HOH A 49 549 215 HOH HOH . 
E 3 HOH A 50 550 205 HOH HOH . 
E 3 HOH A 51 551 88 HOH HOH . 
E 3 HOH A 52 552 14 HOH HOH . 
E 3 HOH A 53 553 86 HOH HOH . 
E 3 HOH A 54 554 80 HOH HOH . 
E 3 HOH A 55 555 232 HOH HOH . 
E 3 HOH A 56 556 89 HOH HOH . 
E 3 HOH A 57 557 48 HOH HOH . 
E 3 HOH A 58 558 74 HOH HOH . 
E 3 HOH A 59 559 69 HOH HOH . 
E 3 HOH A 60 560 62 HOH HOH . 
E 3 HOH A 61 561 181 HOH HOH . 
E 3 HOH A 62 562 37 HOH HOH . 
E 3 HOH A 63 563 44 HOH HOH . 
E 3 HOH A 64 564 81 HOH HOH . 
E 3 HOH A 65 565 104 HOH HOH . 
E 3 HOH A 66 566 190 HOH HOH . 
E 3 HOH A 67 567 177 HOH HOH . 
E 3 HOH A 68 568 109 HOH HOH . 
E 3 HOH A 69 569 178 HOH HOH . 
E 3 HOH A 70 570 210 HOH HOH . 
E 3 HOH A 71 571 241 HOH HOH . 
E 3 HOH A 72 572 192 HOH HOH . 
E 3 HOH A 73 573 15 HOH HOH . 
E 3 HOH A 74 574 41 HOH HOH . 
E 3 HOH A 75 575 122 HOH HOH . 
E 3 HOH A 76 576 214 HOH HOH . 
E 3 HOH A 77 577 239 HOH HOH . 
E 3 HOH A 78 578 186 HOH HOH . 
E 3 HOH A 79 579 191 HOH HOH . 
E 3 HOH A 80 580 128 HOH HOH . 
E 3 HOH A 81 581 237 HOH HOH . 
E 3 HOH A 82 582 141 HOH HOH . 
E 3 HOH A 83 583 53 HOH HOH . 
E 3 HOH A 84 584 103 HOH HOH . 
E 3 HOH A 85 585 182 HOH HOH . 
E 3 HOH A 86 586 238 HOH HOH . 
E 3 HOH A 87 587 175 HOH HOH . 
E 3 HOH A 88 588 185 HOH HOH . 
E 3 HOH A 89 589 102 HOH HOH . 
E 3 HOH A 90 590 107 HOH HOH . 
E 3 HOH A 91 591 5 HOH HOH . 
E 3 HOH A 92 592 183 HOH HOH . 
F 3 HOH B 1 501 6 HOH HOH . 
F 3 HOH B 2 502 217 HOH HOH . 
F 3 HOH B 3 503 61 HOH HOH . 
F 3 HOH B 4 504 227 HOH HOH . 
F 3 HOH B 5 505 116 HOH HOH . 
F 3 HOH B 6 506 138 HOH HOH . 
F 3 HOH B 7 507 139 HOH HOH . 
F 3 HOH B 8 508 82 HOH HOH . 
F 3 HOH B 9 509 23 HOH HOH . 
F 3 HOH B 10 510 219 HOH HOH . 
F 3 HOH B 11 511 222 HOH HOH . 
F 3 HOH B 12 512 54 HOH HOH . 
F 3 HOH B 13 513 140 HOH HOH . 
F 3 HOH B 14 514 119 HOH HOH . 
F 3 HOH B 15 515 63 HOH HOH . 
F 3 HOH B 16 516 223 HOH HOH . 
F 3 HOH B 17 517 148 HOH HOH . 
F 3 HOH B 18 518 16 HOH HOH . 
F 3 HOH B 19 519 225 HOH HOH . 
F 3 HOH B 20 520 115 HOH HOH . 
F 3 HOH B 21 521 10 HOH HOH . 
F 3 HOH B 22 522 67 HOH HOH . 
F 3 HOH B 23 523 26 HOH HOH . 
F 3 HOH B 24 524 91 HOH HOH . 
F 3 HOH B 25 525 231 HOH HOH . 
F 3 HOH B 26 526 163 HOH HOH . 
F 3 HOH B 27 527 220 HOH HOH . 
F 3 HOH B 28 528 29 HOH HOH . 
F 3 HOH B 29 529 30 HOH HOH . 
F 3 HOH B 30 530 33 HOH HOH . 
F 3 HOH B 31 531 66 HOH HOH . 
F 3 HOH B 32 532 73 HOH HOH . 
F 3 HOH B 33 533 4 HOH HOH . 
F 3 HOH B 34 534 118 HOH HOH . 
F 3 HOH B 35 535 25 HOH HOH . 
F 3 HOH B 36 536 136 HOH HOH . 
F 3 HOH B 37 537 200 HOH HOH . 
F 3 HOH B 38 538 211 HOH HOH . 
F 3 HOH B 39 539 65 HOH HOH . 
F 3 HOH B 40 540 229 HOH HOH . 
F 3 HOH B 41 541 216 HOH HOH . 
F 3 HOH B 42 542 68 HOH HOH . 
F 3 HOH B 43 543 207 HOH HOH . 
F 3 HOH B 44 544 125 HOH HOH . 
F 3 HOH B 45 545 111 HOH HOH . 
F 3 HOH B 46 546 158 HOH HOH . 
F 3 HOH B 47 547 156 HOH HOH . 
F 3 HOH B 48 548 9 HOH HOH . 
F 3 HOH B 49 549 142 HOH HOH . 
F 3 HOH B 50 550 221 HOH HOH . 
F 3 HOH B 51 551 34 HOH HOH . 
F 3 HOH B 52 552 27 HOH HOH . 
F 3 HOH B 53 553 126 HOH HOH . 
F 3 HOH B 54 554 64 HOH HOH . 
F 3 HOH B 55 555 78 HOH HOH . 
F 3 HOH B 56 556 56 HOH HOH . 
F 3 HOH B 57 557 159 HOH HOH . 
F 3 HOH B 58 558 18 HOH HOH . 
F 3 HOH B 59 559 165 HOH HOH . 
F 3 HOH B 60 560 117 HOH HOH . 
F 3 HOH B 61 561 196 HOH HOH . 
F 3 HOH B 62 562 40 HOH HOH . 
F 3 HOH B 63 563 94 HOH HOH . 
F 3 HOH B 64 564 45 HOH HOH . 
F 3 HOH B 65 565 155 HOH HOH . 
F 3 HOH B 66 566 96 HOH HOH . 
F 3 HOH B 67 567 79 HOH HOH . 
F 3 HOH B 68 568 17 HOH HOH . 
F 3 HOH B 69 569 171 HOH HOH . 
F 3 HOH B 70 570 83 HOH HOH . 
F 3 HOH B 71 571 168 HOH HOH . 
F 3 HOH B 72 572 124 HOH HOH . 
F 3 HOH B 73 573 12 HOH HOH . 
F 3 HOH B 74 574 198 HOH HOH . 
F 3 HOH B 75 575 112 HOH HOH . 
F 3 HOH B 76 576 226 HOH HOH . 
F 3 HOH B 77 577 153 HOH HOH . 
F 3 HOH B 78 578 201 HOH HOH . 
F 3 HOH B 79 579 152 HOH HOH . 
F 3 HOH B 80 580 120 HOH HOH . 
F 3 HOH B 81 581 113 HOH HOH . 
F 3 HOH B 82 582 224 HOH HOH . 
F 3 HOH B 83 583 230 HOH HOH . 
F 3 HOH B 84 584 164 HOH HOH . 
F 3 HOH B 85 585 154 HOH HOH . 
F 3 HOH B 86 586 149 HOH HOH . 
F 3 HOH B 87 587 202 HOH HOH . 
F 3 HOH B 88 588 59 HOH HOH . 
F 3 HOH B 89 589 129 HOH HOH . 
F 3 HOH B 90 590 134 HOH HOH . 
F 3 HOH B 91 591 123 HOH HOH . 
F 3 HOH B 92 592 218 HOH HOH . 
F 3 HOH B 93 593 92 HOH HOH . 
F 3 HOH B 94 594 228 HOH HOH . 
F 3 HOH B 95 595 197 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O13 A2B . . . D 2 -34.12 -55.714 17.283 1 55.76 ? O13 A2B 401 B 1 
HETATM 2 C C8 A2B . . . D 2 -36.266 -52.945 18.268 1 48.71 ? C8 A2B 401 B 1 
HETATM 3 O O1 A2B . . . D 2 -37.181 -52.982 19.294 1 36.22 ? O1 A2B 401 B 1 
HETATM 4 C C7 A2B . . . D 2 -36.812 -52.309 17.072 1 51.71 ? C7 A2B 401 B 1 
HETATM 5 O O12 A2B . . . D 2 -35.77 -51.618 16.471 1 56.59 ? O12 A2B 401 B 1 
HETATM 6 C C6 A2B . . . D 2 -37.201 -53.371 16.17 1 47.23 ? C6 A2B 401 B 1 
HETATM 7 O O5 A2B . . . D 2 -36.641 -54.576 16.685 1 49.48 ? O5 A2B 401 B 1 
HETATM 8 C C4 A2B . . . D 2 -35.951 -54.288 17.883 1 46.88 ? C4 A2B 401 B 1 
HETATM 9 C C11 A2B . . . D 2 -34.495 -54.443 17.664 1 45.95 ? C11 A2B 401 B 1 
HETATM 10 O O3 A2B . . . D 2 -36.388 -55.14 18.904 1 38.38 ? O3 A2B 401 B 1 
HETATM 11 B B A2B . . . D 2 -37.138 -54.29 19.817 1 43.08 ? B A2B 401 B 1 
HETATM 12 O O10 A2B . . . D 2 -38.522 -54.717 19.928 1 45.54 ? O10 A2B 401 B 1 
HETATM 13 O O9 A2B . . . D 2 -36.527 -54.369 21.135 1 38.57 ? O9 A2B 401 B 1 
#
_model_server_stats.io_time_ms              235 
_model_server_stats.parse_time_ms           97 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           353 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#