data_4YSA # _model_server_result.job_id MvQ2AIWFXHQt7OVtT2dpQw _model_server_result.datetime_utc '2024-11-01 07:19:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ysa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":407}' # _entry.id 4YSA # _exptl.entry_id 4YSA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YSA _cell.length_a 116.197 _cell.length_b 116.197 _cell.length_c 85.553 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YSA _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 39 A HIS 39 1_555 F CU CU . A CU 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A NE2 HIS 42 A HIS 42 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc3 A OE1 GLU 53 A GLU 53 1_555 E CU CU . A CU 404 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc4 A OE2 GLU 53 A GLU 53 1_555 E CU CU . A CU 404 6_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc5 A ND1 HIS 83 A HIS 83 1_555 E CU CU . A CU 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 A ND1 HIS 95 A HIS 95 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc7 A OD2 ASP 98 A ASP 98 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? metalc ? metalc8 A NE2 HIS 100 A HIS 100 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc9 A NE2 HIS 134 A HIS 134 1_555 C CU CU . A CU 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc10 A SG CYS 135 A CYS 135 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc11 A ND1 HIS 143 A HIS 143 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.911 ? metalc ? metalc12 A SD MET 148 A MET 148 1_555 B CU CU . A CU 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc13 A OD1 ASP 167 A ASP 167 1_555 D CU CU . A CU 403 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.942 ? metalc ? metalc14 A OD2 ASP 167 A ASP 167 1_555 D CU CU . A CU 403 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.019 ? metalc ? metalc15 A NE2 HIS 244 A HIS 244 1_555 H CU CU . A CU 407 2_555 ? ? ? ? B ? ? ? ? ? ? ? 1.825 ? metalc ? metalc16 A NE2 HIS 294 A HIS 294 1_555 C CU CU . A CU 402 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc17 C CU CU . A CU 402 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc18 C CU CU . A CU 402 1_555 J O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc19 D CU CU . A CU 403 1_555 J O HOH . A HOH 533 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc20 D CU CU . A CU 403 1_555 J O HOH . A HOH 568 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc21 E CU CU . A CU 404 1_555 J O HOH . A HOH 572 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc22 E CU CU . A CU 404 1_555 J O HOH . A HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc23 G CU CU . A CU 406 1_555 J O HOH . A HOH 631 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? metalc ? metalc24 G CU CU . A CU 406 1_555 J O HOH . A HOH 631 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc25 H CU CU . A CU 407 1_555 J O HOH . A HOH 509 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc26 I NA NA . A NA 408 1_555 J O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc27 I NA NA . A NA 408 1_555 J O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? metalc ? metalc28 I NA NA . A NA 408 1_555 J O HOH . A HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc29 I NA NA . A NA 408 1_555 J O HOH . A HOH 626 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YSA _atom_sites.fract_transf_matrix[1][1] 0.008606 _atom_sites.fract_transf_matrix[1][2] 0.004969 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009937 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011689 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CU A 1 401 1 CU CU . C 2 CU A 1 402 2 CU CU . D 2 CU A 1 403 3 CU CU . E 2 CU A 1 404 4 CU CU . F 2 CU A 1 405 5 CU CU . G 2 CU A 1 406 6 CU CU . H 2 CU A 1 407 7 CU CU . I 3 NA A 1 408 8 NA NA . J 4 HOH A 1 501 129 HOH HOH . J 4 HOH A 2 502 109 HOH HOH . J 4 HOH A 3 503 124 HOH HOH . J 4 HOH A 4 504 99 HOH HOH . J 4 HOH A 5 505 79 HOH HOH . J 4 HOH A 6 506 25 HOH HOH . J 4 HOH A 7 507 27 HOH HOH . J 4 HOH A 8 508 130 HOH HOH . J 4 HOH A 9 509 108 HOH HOH . J 4 HOH A 10 510 77 HOH HOH . J 4 HOH A 11 511 64 HOH HOH . J 4 HOH A 12 512 42 HOH HOH . J 4 HOH A 13 513 12 HOH HOH . J 4 HOH A 14 514 10 HOH HOH . J 4 HOH A 15 515 91 HOH HOH . J 4 HOH A 16 516 47 HOH HOH . J 4 HOH A 17 517 33 HOH HOH . J 4 HOH A 18 518 58 HOH HOH . J 4 HOH A 19 519 57 HOH HOH . J 4 HOH A 20 520 24 HOH HOH . J 4 HOH A 21 521 11 HOH HOH . J 4 HOH A 22 522 46 HOH HOH . J 4 HOH A 23 523 69 HOH HOH . J 4 HOH A 24 524 81 HOH HOH . J 4 HOH A 25 525 29 HOH HOH . J 4 HOH A 26 526 104 HOH HOH . J 4 HOH A 27 527 44 HOH HOH . J 4 HOH A 28 528 30 HOH HOH . J 4 HOH A 29 529 37 HOH HOH . J 4 HOH A 30 530 53 HOH HOH . J 4 HOH A 31 531 82 HOH HOH . J 4 HOH A 32 532 16 HOH HOH . J 4 HOH A 33 533 105 HOH HOH . J 4 HOH A 34 534 87 HOH HOH . J 4 HOH A 35 535 50 HOH HOH . J 4 HOH A 36 536 28 HOH HOH . J 4 HOH A 37 537 72 HOH HOH . J 4 HOH A 38 538 113 HOH HOH . J 4 HOH A 39 539 70 HOH HOH . J 4 HOH A 40 540 66 HOH HOH . J 4 HOH A 41 541 8 HOH HOH . J 4 HOH A 42 542 84 HOH HOH . J 4 HOH A 43 543 18 HOH HOH . J 4 HOH A 44 544 125 HOH HOH . J 4 HOH A 45 545 19 HOH HOH . J 4 HOH A 46 546 34 HOH HOH . J 4 HOH A 47 547 56 HOH HOH . J 4 HOH A 48 548 96 HOH HOH . J 4 HOH A 49 549 132 HOH HOH . J 4 HOH A 50 550 49 HOH HOH . J 4 HOH A 51 551 3 HOH HOH . J 4 HOH A 52 552 31 HOH HOH . J 4 HOH A 53 553 92 HOH HOH . J 4 HOH A 54 554 122 HOH HOH . J 4 HOH A 55 555 131 HOH HOH . J 4 HOH A 56 556 23 HOH HOH . J 4 HOH A 57 557 13 HOH HOH . J 4 HOH A 58 558 4 HOH HOH . J 4 HOH A 59 559 26 HOH HOH . J 4 HOH A 60 560 60 HOH HOH . J 4 HOH A 61 561 9 HOH HOH . J 4 HOH A 62 562 7 HOH HOH . J 4 HOH A 63 563 97 HOH HOH . J 4 HOH A 64 564 128 HOH HOH . J 4 HOH A 65 565 32 HOH HOH . J 4 HOH A 66 566 6 HOH HOH . J 4 HOH A 67 567 52 HOH HOH . J 4 HOH A 68 568 110 HOH HOH . J 4 HOH A 69 569 93 HOH HOH . J 4 HOH A 70 570 48 HOH HOH . J 4 HOH A 71 571 45 HOH HOH . J 4 HOH A 72 572 5 HOH HOH . J 4 HOH A 73 573 2 HOH HOH . J 4 HOH A 74 574 106 HOH HOH . J 4 HOH A 75 575 22 HOH HOH . J 4 HOH A 76 576 36 HOH HOH . J 4 HOH A 77 577 71 HOH HOH . J 4 HOH A 78 578 35 HOH HOH . J 4 HOH A 79 579 20 HOH HOH . J 4 HOH A 80 580 14 HOH HOH . J 4 HOH A 81 581 67 HOH HOH . J 4 HOH A 82 582 90 HOH HOH . J 4 HOH A 83 583 103 HOH HOH . J 4 HOH A 84 584 59 HOH HOH . J 4 HOH A 85 585 65 HOH HOH . J 4 HOH A 86 586 78 HOH HOH . J 4 HOH A 87 587 121 HOH HOH . J 4 HOH A 88 588 119 HOH HOH . J 4 HOH A 89 589 51 HOH HOH . J 4 HOH A 90 590 98 HOH HOH . J 4 HOH A 91 591 102 HOH HOH . J 4 HOH A 92 592 76 HOH HOH . J 4 HOH A 93 593 15 HOH HOH . J 4 HOH A 94 594 21 HOH HOH . J 4 HOH A 95 595 114 HOH HOH . J 4 HOH A 96 596 88 HOH HOH . J 4 HOH A 97 597 101 HOH HOH . J 4 HOH A 98 598 39 HOH HOH . J 4 HOH A 99 599 38 HOH HOH . J 4 HOH A 100 600 54 HOH HOH . J 4 HOH A 101 601 127 HOH HOH . J 4 HOH A 102 602 83 HOH HOH . J 4 HOH A 103 603 75 HOH HOH . J 4 HOH A 104 604 120 HOH HOH . J 4 HOH A 105 605 80 HOH HOH . J 4 HOH A 106 606 62 HOH HOH . J 4 HOH A 107 607 85 HOH HOH . J 4 HOH A 108 608 55 HOH HOH . J 4 HOH A 109 609 43 HOH HOH . J 4 HOH A 110 610 117 HOH HOH . J 4 HOH A 111 611 74 HOH HOH . J 4 HOH A 112 612 17 HOH HOH . J 4 HOH A 113 613 73 HOH HOH . J 4 HOH A 114 614 68 HOH HOH . J 4 HOH A 115 615 94 HOH HOH . J 4 HOH A 116 616 86 HOH HOH . J 4 HOH A 117 617 89 HOH HOH . J 4 HOH A 118 618 41 HOH HOH . J 4 HOH A 119 619 63 HOH HOH . J 4 HOH A 120 620 107 HOH HOH . J 4 HOH A 121 621 133 HOH HOH . J 4 HOH A 122 622 61 HOH HOH . J 4 HOH A 123 623 100 HOH HOH . J 4 HOH A 124 624 115 HOH HOH . J 4 HOH A 125 625 40 HOH HOH . J 4 HOH A 126 626 1 HOH HOH . J 4 HOH A 127 627 95 HOH HOH . J 4 HOH A 128 628 126 HOH HOH . J 4 HOH A 129 629 111 HOH HOH . J 4 HOH A 130 630 116 HOH HOH . J 4 HOH A 131 631 112 HOH HOH . J 4 HOH A 132 632 134 HOH HOH . J 4 HOH A 133 633 118 HOH HOH . J 4 HOH A 134 634 123 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id B _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.423 _atom_site.Cartn_y -12.586 _atom_site.Cartn_z -2.603 _atom_site.occupancy 0.2 _atom_site.B_iso_or_equiv 35.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 407 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #