data_4YSI # _model_server_result.job_id riGSsGXsPx_UK_BJZsr6EQ _model_server_result.datetime_utc '2024-10-12 12:22:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ysi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 4YSI # _exptl.entry_id 4YSI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YSI _cell.length_a 69.975 _cell.length_b 69.975 _cell.length_c 45.444 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YSI _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4YSI _atom_sites.fract_transf_matrix[1][1] 0.014291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014291 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022005 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 301 1 GOL GOL . D 4 HOH A 1 401 244 HOH HOH . D 4 HOH A 2 402 73 HOH HOH . D 4 HOH A 3 403 237 HOH HOH . D 4 HOH A 4 404 224 HOH HOH . D 4 HOH A 5 405 144 HOH HOH . D 4 HOH A 6 406 247 HOH HOH . D 4 HOH A 7 407 159 HOH HOH . D 4 HOH A 8 408 239 HOH HOH . D 4 HOH A 9 409 121 HOH HOH . D 4 HOH A 10 410 232 HOH HOH . D 4 HOH A 11 411 174 HOH HOH . D 4 HOH A 12 412 57 HOH HOH . D 4 HOH A 13 413 111 HOH HOH . D 4 HOH A 14 414 33 HOH HOH . D 4 HOH A 15 415 227 HOH HOH . D 4 HOH A 16 416 139 HOH HOH . D 4 HOH A 17 417 184 HOH HOH . D 4 HOH A 18 418 9 HOH HOH . D 4 HOH A 19 419 93 HOH HOH . D 4 HOH A 20 420 185 HOH HOH . D 4 HOH A 21 421 42 HOH HOH . D 4 HOH A 22 422 3 HOH HOH . D 4 HOH A 23 423 161 HOH HOH . D 4 HOH A 24 424 29 HOH HOH . D 4 HOH A 25 425 248 HOH HOH . D 4 HOH A 26 426 18 HOH HOH . D 4 HOH A 27 427 164 HOH HOH . D 4 HOH A 28 428 213 HOH HOH . D 4 HOH A 29 429 165 HOH HOH . D 4 HOH A 30 430 5 HOH HOH . D 4 HOH A 31 431 22 HOH HOH . D 4 HOH A 32 432 20 HOH HOH . D 4 HOH A 33 433 116 HOH HOH . D 4 HOH A 34 434 95 HOH HOH . D 4 HOH A 35 435 100 HOH HOH . D 4 HOH A 36 436 259 HOH HOH . D 4 HOH A 37 437 106 HOH HOH . D 4 HOH A 38 438 194 HOH HOH . D 4 HOH A 39 439 130 HOH HOH . D 4 HOH A 40 440 92 HOH HOH . D 4 HOH A 41 441 216 HOH HOH . D 4 HOH A 42 442 108 HOH HOH . D 4 HOH A 43 443 155 HOH HOH . D 4 HOH A 44 444 117 HOH HOH . D 4 HOH A 45 445 54 HOH HOH . D 4 HOH A 46 446 46 HOH HOH . D 4 HOH A 47 447 226 HOH HOH . D 4 HOH A 48 448 140 HOH HOH . D 4 HOH A 49 449 263 HOH HOH . D 4 HOH A 50 450 67 HOH HOH . D 4 HOH A 51 451 118 HOH HOH . D 4 HOH A 52 452 14 HOH HOH . D 4 HOH A 53 453 8 HOH HOH . D 4 HOH A 54 454 260 HOH HOH . D 4 HOH A 55 455 49 HOH HOH . D 4 HOH A 56 456 133 HOH HOH . D 4 HOH A 57 457 51 HOH HOH . D 4 HOH A 58 458 65 HOH HOH . D 4 HOH A 59 459 107 HOH HOH . D 4 HOH A 60 460 35 HOH HOH . D 4 HOH A 61 461 102 HOH HOH . D 4 HOH A 62 462 250 HOH HOH . D 4 HOH A 63 463 97 HOH HOH . D 4 HOH A 64 464 189 HOH HOH . D 4 HOH A 65 465 91 HOH HOH . D 4 HOH A 66 466 94 HOH HOH . D 4 HOH A 67 467 36 HOH HOH . D 4 HOH A 68 468 256 HOH HOH . D 4 HOH A 69 469 13 HOH HOH . D 4 HOH A 70 470 156 HOH HOH . D 4 HOH A 71 471 115 HOH HOH . D 4 HOH A 72 472 150 HOH HOH . D 4 HOH A 73 473 2 HOH HOH . D 4 HOH A 74 474 98 HOH HOH . D 4 HOH A 75 475 124 HOH HOH . D 4 HOH A 76 476 120 HOH HOH . D 4 HOH A 77 477 74 HOH HOH . D 4 HOH A 78 478 265 HOH HOH . D 4 HOH A 79 479 190 HOH HOH . D 4 HOH A 80 480 10 HOH HOH . D 4 HOH A 81 481 240 HOH HOH . D 4 HOH A 82 482 137 HOH HOH . D 4 HOH A 83 483 223 HOH HOH . D 4 HOH A 84 484 11 HOH HOH . D 4 HOH A 85 485 142 HOH HOH . D 4 HOH A 86 486 96 HOH HOH . D 4 HOH A 87 487 198 HOH HOH . D 4 HOH A 88 488 158 HOH HOH . D 4 HOH A 89 489 52 HOH HOH . D 4 HOH A 90 490 15 HOH HOH . D 4 HOH A 91 491 66 HOH HOH . D 4 HOH A 92 492 125 HOH HOH . D 4 HOH A 93 493 31 HOH HOH . D 4 HOH A 94 494 191 HOH HOH . D 4 HOH A 95 495 104 HOH HOH . D 4 HOH A 96 496 128 HOH HOH . D 4 HOH A 97 497 122 HOH HOH . D 4 HOH A 98 498 217 HOH HOH . D 4 HOH A 99 499 59 HOH HOH . D 4 HOH A 100 500 27 HOH HOH . D 4 HOH A 101 501 71 HOH HOH . D 4 HOH A 102 502 105 HOH HOH . D 4 HOH A 103 503 175 HOH HOH . D 4 HOH A 104 504 132 HOH HOH . D 4 HOH A 105 505 40 HOH HOH . D 4 HOH A 106 506 219 HOH HOH . D 4 HOH A 107 507 208 HOH HOH . D 4 HOH A 108 508 123 HOH HOH . D 4 HOH A 109 509 138 HOH HOH . D 4 HOH A 110 510 220 HOH HOH . D 4 HOH A 111 511 1 HOH HOH . D 4 HOH A 112 512 110 HOH HOH . D 4 HOH A 113 513 26 HOH HOH . D 4 HOH A 114 514 131 HOH HOH . D 4 HOH A 115 515 6 HOH HOH . D 4 HOH A 116 516 41 HOH HOH . D 4 HOH A 117 517 37 HOH HOH . D 4 HOH A 118 518 24 HOH HOH . D 4 HOH A 119 519 171 HOH HOH . D 4 HOH A 120 520 99 HOH HOH . D 4 HOH A 121 521 153 HOH HOH . D 4 HOH A 122 522 38 HOH HOH . D 4 HOH A 123 523 127 HOH HOH . D 4 HOH A 124 524 101 HOH HOH . D 4 HOH A 125 525 4 HOH HOH . D 4 HOH A 126 526 61 HOH HOH . D 4 HOH A 127 527 19 HOH HOH . D 4 HOH A 128 528 252 HOH HOH . D 4 HOH A 129 529 103 HOH HOH . D 4 HOH A 130 530 261 HOH HOH . D 4 HOH A 131 531 34 HOH HOH . D 4 HOH A 132 532 7 HOH HOH . D 4 HOH A 133 533 152 HOH HOH . D 4 HOH A 134 534 45 HOH HOH . D 4 HOH A 135 535 143 HOH HOH . D 4 HOH A 136 536 50 HOH HOH . D 4 HOH A 137 537 70 HOH HOH . D 4 HOH A 138 538 77 HOH HOH . D 4 HOH A 139 539 229 HOH HOH . D 4 HOH A 140 540 23 HOH HOH . D 4 HOH A 141 541 251 HOH HOH . D 4 HOH A 142 542 12 HOH HOH . D 4 HOH A 143 543 183 HOH HOH . D 4 HOH A 144 544 119 HOH HOH . D 4 HOH A 145 545 48 HOH HOH . D 4 HOH A 146 546 176 HOH HOH . D 4 HOH A 147 547 126 HOH HOH . D 4 HOH A 148 548 238 HOH HOH . D 4 HOH A 149 549 163 HOH HOH . D 4 HOH A 150 550 177 HOH HOH . D 4 HOH A 151 551 230 HOH HOH . D 4 HOH A 152 552 218 HOH HOH . D 4 HOH A 153 553 203 HOH HOH . D 4 HOH A 154 554 231 HOH HOH . D 4 HOH A 155 555 225 HOH HOH . D 4 HOH A 156 556 166 HOH HOH . D 4 HOH A 157 557 112 HOH HOH . D 4 HOH A 158 558 197 HOH HOH . D 4 HOH A 159 559 83 HOH HOH . D 4 HOH A 160 560 60 HOH HOH . D 4 HOH A 161 561 168 HOH HOH . D 4 HOH A 162 562 113 HOH HOH . D 4 HOH A 163 563 207 HOH HOH . D 4 HOH A 164 564 173 HOH HOH . D 4 HOH A 165 565 172 HOH HOH . D 4 HOH A 166 566 211 HOH HOH . D 4 HOH A 167 567 169 HOH HOH . D 4 HOH A 168 568 215 HOH HOH . D 4 HOH A 169 569 255 HOH HOH . D 4 HOH A 170 570 154 HOH HOH . D 4 HOH A 171 571 162 HOH HOH . D 4 HOH A 172 572 157 HOH HOH . D 4 HOH A 173 573 141 HOH HOH . D 4 HOH A 174 574 205 HOH HOH . D 4 HOH A 175 575 193 HOH HOH . D 4 HOH A 176 576 253 HOH HOH . D 4 HOH A 177 577 58 HOH HOH . D 4 HOH A 178 578 25 HOH HOH . D 4 HOH A 179 579 28 HOH HOH . D 4 HOH A 180 580 214 HOH HOH . D 4 HOH A 181 581 182 HOH HOH . D 4 HOH A 182 582 242 HOH HOH . D 4 HOH A 183 583 89 HOH HOH . D 4 HOH A 184 584 148 HOH HOH . D 4 HOH A 185 585 134 HOH HOH . D 4 HOH A 186 586 149 HOH HOH . D 4 HOH A 187 587 72 HOH HOH . D 4 HOH A 188 588 79 HOH HOH . D 4 HOH A 189 589 129 HOH HOH . D 4 HOH A 190 590 257 HOH HOH . D 4 HOH A 191 591 202 HOH HOH . D 4 HOH A 192 592 160 HOH HOH . D 4 HOH A 193 593 204 HOH HOH . D 4 HOH A 194 594 235 HOH HOH . D 4 HOH A 195 595 209 HOH HOH . D 4 HOH A 196 596 245 HOH HOH . D 4 HOH A 197 597 180 HOH HOH . D 4 HOH A 198 598 266 HOH HOH . D 4 HOH A 199 599 30 HOH HOH . D 4 HOH A 200 600 167 HOH HOH . D 4 HOH A 201 601 32 HOH HOH . D 4 HOH A 202 602 53 HOH HOH . D 4 HOH A 203 603 192 HOH HOH . D 4 HOH A 204 604 43 HOH HOH . D 4 HOH A 205 605 228 HOH HOH . D 4 HOH A 206 606 201 HOH HOH . D 4 HOH A 207 607 222 HOH HOH . D 4 HOH A 208 608 63 HOH HOH . D 4 HOH A 209 609 179 HOH HOH . D 4 HOH A 210 610 241 HOH HOH . D 4 HOH A 211 611 109 HOH HOH . D 4 HOH A 212 612 151 HOH HOH . D 4 HOH A 213 613 210 HOH HOH . D 4 HOH A 214 614 258 HOH HOH . D 4 HOH A 215 615 262 HOH HOH . D 4 HOH A 216 616 64 HOH HOH . D 4 HOH A 217 617 86 HOH HOH . D 4 HOH A 218 618 170 HOH HOH . D 4 HOH A 219 619 200 HOH HOH . D 4 HOH A 220 620 145 HOH HOH . D 4 HOH A 221 621 195 HOH HOH . D 4 HOH A 222 622 39 HOH HOH . D 4 HOH A 223 623 84 HOH HOH . D 4 HOH A 224 624 181 HOH HOH . D 4 HOH A 225 625 146 HOH HOH . D 4 HOH A 226 626 81 HOH HOH . D 4 HOH A 227 627 243 HOH HOH . D 4 HOH A 228 628 78 HOH HOH . D 4 HOH A 229 629 69 HOH HOH . D 4 HOH A 230 630 268 HOH HOH . D 4 HOH A 231 631 76 HOH HOH . D 4 HOH A 232 632 68 HOH HOH . D 4 HOH A 233 633 114 HOH HOH . D 4 HOH A 234 634 88 HOH HOH . D 4 HOH A 235 635 75 HOH HOH . D 4 HOH A 236 636 47 HOH HOH . D 4 HOH A 237 637 267 HOH HOH . D 4 HOH A 238 638 87 HOH HOH . D 4 HOH A 239 639 17 HOH HOH . D 4 HOH A 240 640 44 HOH HOH . D 4 HOH A 241 641 221 HOH HOH . D 4 HOH A 242 642 196 HOH HOH . D 4 HOH A 243 643 212 HOH HOH . D 4 HOH A 244 644 80 HOH HOH . D 4 HOH A 245 645 82 HOH HOH . D 4 HOH A 246 646 85 HOH HOH . D 4 HOH A 247 647 90 HOH HOH . D 4 HOH A 248 648 199 HOH HOH . D 4 HOH A 249 649 236 HOH HOH . E 4 HOH B 1 101 16 HOH HOH . E 4 HOH B 2 102 246 HOH HOH . E 4 HOH B 3 103 188 HOH HOH . E 4 HOH B 4 104 21 HOH HOH . E 4 HOH B 5 105 187 HOH HOH . E 4 HOH B 6 106 62 HOH HOH . E 4 HOH B 7 107 178 HOH HOH . E 4 HOH B 8 108 56 HOH HOH . E 4 HOH B 9 109 186 HOH HOH . E 4 HOH B 10 110 254 HOH HOH . E 4 HOH B 11 111 55 HOH HOH . E 4 HOH B 12 112 249 HOH HOH . E 4 HOH B 13 113 147 HOH HOH . E 4 HOH B 14 114 234 HOH HOH . E 4 HOH B 15 115 206 HOH HOH . E 4 HOH B 16 116 135 HOH HOH . E 4 HOH B 17 117 264 HOH HOH . E 4 HOH B 18 118 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 41.736 -6.751 -13.456 1 15.32 ? C1 GOL 301 A 1 HETATM 2 O O1 GOL . . . C 3 41.178 -5.472 -13.725 1 13.95 ? O1 GOL 301 A 1 HETATM 3 C C2 GOL . . . C 3 41.432 -7.694 -14.619 1 15.37 ? C2 GOL 301 A 1 HETATM 4 O O2 GOL . . . C 3 40.035 -7.706 -14.851 1 16.09 ? O2 GOL 301 A 1 HETATM 5 C C3 GOL . . . C 3 41.955 -9.115 -14.386 1 19.98 ? C3 GOL 301 A 1 HETATM 6 O O3 GOL . . . C 3 41.14 -9.82 -13.468 1 17.83 ? O3 GOL 301 A 1 HETATM 7 H H11 GOL . . . C 3 41.313 -7.153 -12.535 1 18.38 ? H11 GOL 301 A 1 HETATM 8 H H12 GOL . . . C 3 42.815 -6.663 -13.325 1 18.38 ? H12 GOL 301 A 1 HETATM 9 H HO1 GOL . . . C 3 41.315 -4.886 -12.952 1 16.74 ? HO1 GOL 301 A 1 HETATM 10 H H2 GOL . . . C 3 41.931 -7.299 -15.504 1 18.45 ? H2 GOL 301 A 1 HETATM 11 H HO2 GOL . . . C 3 39.84 -8.259 -15.637 1 19.3 ? HO2 GOL 301 A 1 HETATM 12 H H31 GOL . . . C 3 42.974 -9.067 -14.003 1 23.98 ? H31 GOL 301 A 1 HETATM 13 H H32 GOL . . . C 3 41.98 -9.652 -15.335 1 23.98 ? H32 GOL 301 A 1 HETATM 14 H HO3 GOL . . . C 3 40.226 -9.877 -13.819 1 21.4 ? HO3 GOL 301 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #