data_4YSY # _model_server_result.job_id JJCCryfEPrOYuo41DUNfVA _model_server_result.datetime_utc '2024-11-24 11:39:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ysy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":304}' # _entry.id 4YSY # _exptl.entry_id 4YSY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 348.147 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2,4-dichlorobenzyl)-2-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YSY _cell.length_a 124.12 _cell.length_b 127.66 _cell.length_c 220.736 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YSY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Y,Z,AA 1 1 E,F,G,H,Q,R,S,T,U,V,W,X,BA,CA,DA,EA 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 N N N ? 10 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 E SG CYS 191 E CYS 191 1_555 E SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc5 B SG CYS 182 B CYS 182 1_555 L FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc6 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc7 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc8 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc9 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc10 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc11 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc12 C NE2 HIS 131 C HIS 131 1_555 O FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc13 O FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc14 F SG CYS 89 F CYS 89 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc15 F SG CYS 94 F CYS 94 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc16 F SG CYS 97 F CYS 97 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc17 F SG CYS 109 F CYS 109 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc18 F SG CYS 182 F CYS 182 1_555 T FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc19 F SG CYS 185 F CYS 185 1_555 T FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc20 F SG CYS 188 F CYS 188 1_555 T FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc21 F SG CYS 192 F CYS 192 1_555 U FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc22 F SG CYS 239 F CYS 239 1_555 U FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc23 F SG CYS 245 F CYS 245 1_555 U FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc24 F SG CYS 249 F CYS 249 1_555 T FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc25 G NE2 HIS 131 G HIS 131 1_555 W FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc26 W FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? # _chem_comp.formula 'C15 H10 Cl2 F3 N O' _chem_comp.formula_weight 348.147 _chem_comp.id E24 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2,4-dichlorobenzyl)-2-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CLF CAR E24 sing 83 n n CAM CAR E24 doub 84 n y CAM CAQ E24 sing 85 n y CAR CAS E24 sing 86 n y CLE CAQ E24 sing 87 n n CAQ CAK E24 doub 88 n y CAS CAN E24 sing 89 n n CAS CAL E24 doub 90 n y CAN NAO E24 sing 91 n n CAK CAL E24 sing 92 n y NAO CAP E24 sing 93 n n CAP OAA E24 doub 94 n n CAP CAT E24 sing 95 n n CAI CAT E24 doub 96 n y CAI CAG E24 sing 97 n y CAT CAU E24 sing 98 n y CAG CAH E24 doub 99 n y FAB CAV E24 sing 100 n n CAU CAJ E24 doub 101 n y CAU CAV E24 sing 102 n n CAH CAJ E24 sing 103 n y CAV FAD E24 sing 104 n n CAV FAC E24 sing 105 n n CAM H1 E24 sing 106 n n CAK H2 E24 sing 107 n n CAL H3 E24 sing 108 n n CAN H4 E24 sing 109 n n CAN H5 E24 sing 110 n n NAO H6 E24 sing 111 n n CAI H7 E24 sing 112 n n CAG H8 E24 sing 113 n n CAH H9 E24 sing 114 n n CAJ H10 E24 sing 115 n n # _atom_sites.entry_id 4YSY _atom_sites.fract_transf_matrix[1][1] 0.008057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00453 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MLI A 1 701 701 MLI MLI . J 6 FAD A 1 702 702 FAD FAD . K 7 FES B 1 301 301 FES FES . L 8 SF4 B 1 302 302 SF4 SF4 . M 9 F3S B 1 303 303 F3S F3S . N 10 E24 B 1 304 304 E24 E24 . O 11 HEM C 1 201 201 HEM HEM . P 12 EPH D 1 201 201 EPH EPH . Q 5 MLI E 1 701 701 MLI MLI . R 6 FAD E 1 702 702 FAD FAD . S 7 FES F 1 301 301 FES FES . T 8 SF4 F 1 302 302 SF4 SF4 . U 9 F3S F 1 303 303 F3S F3S . V 10 E24 F 1 304 304 E24 E24 . W 11 HEM G 1 201 201 HEM HEM . X 12 EPH H 1 201 201 EPH EPH . Y 13 HOH A 1 801 801 HOH HOH . Y 13 HOH A 2 802 802 HOH HOH . Y 13 HOH A 3 803 803 HOH HOH . Y 13 HOH A 4 804 804 HOH HOH . Y 13 HOH A 5 805 805 HOH HOH . Y 13 HOH A 6 806 806 HOH HOH . Y 13 HOH A 7 807 807 HOH HOH . Z 13 HOH B 1 401 401 HOH HOH . Z 13 HOH B 2 402 402 HOH HOH . Z 13 HOH B 3 403 403 HOH HOH . AA 13 HOH C 1 301 301 HOH HOH . BA 13 HOH E 1 801 801 HOH HOH . BA 13 HOH E 2 802 802 HOH HOH . BA 13 HOH E 3 803 803 HOH HOH . BA 13 HOH E 4 804 804 HOH HOH . BA 13 HOH E 5 805 805 HOH HOH . BA 13 HOH E 6 806 806 HOH HOH . BA 13 HOH E 7 807 807 HOH HOH . BA 13 HOH E 8 808 808 HOH HOH . BA 13 HOH E 9 809 809 HOH HOH . BA 13 HOH E 10 810 810 HOH HOH . CA 13 HOH F 1 401 401 HOH HOH . CA 13 HOH F 2 402 402 HOH HOH . DA 13 HOH G 1 301 301 HOH HOH . EA 13 HOH H 1 301 301 HOH HOH . EA 13 HOH H 2 302 302 HOH HOH . EA 13 HOH H 3 303 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CLF E24 . . . V 10 0.542 -14.53 -16.412 1 83.04 ? CLF E24 304 F 1 HETATM 2 C CAR E24 . . . V 10 0.525 -16.21 -16.646 1 83.63 ? CAR E24 304 F 1 HETATM 3 C CAM E24 . . . V 10 -0.554 -16.96 -16.179 1 85.86 ? CAM E24 304 F 1 HETATM 4 C CAQ E24 . . . V 10 -0.578 -18.343 -16.374 1 90.06 ? CAQ E24 304 F 1 HETATM 5 CL CLE E24 . . . V 10 -1.903 -19.284 -15.791 1 96.05 ? CLE E24 304 F 1 HETATM 6 C CAK E24 . . . V 10 0.47 -18.976 -17.039 1 87.35 ? CAK E24 304 F 1 HETATM 7 C CAL E24 . . . V 10 1.542 -18.222 -17.508 1 87.31 ? CAL E24 304 F 1 HETATM 8 C CAS E24 . . . V 10 1.58 -16.834 -17.32 1 84.25 ? CAS E24 304 F 1 HETATM 9 C CAN E24 . . . V 10 2.654 -16.101 -17.794 1 79.55 ? CAN E24 304 F 1 HETATM 10 N NAO E24 . . . V 10 2.156 -15.246 -18.899 1 76.82 ? NAO E24 304 F 1 HETATM 11 C CAP E24 . . . V 10 1.89 -15.714 -20.153 1 73.24 ? CAP E24 304 F 1 HETATM 12 O OAA E24 . . . V 10 2.001 -16.901 -20.471 1 74.95 ? OAA E24 304 F 1 HETATM 13 C CAT E24 . . . V 10 1.424 -14.756 -21.082 1 68.9 ? CAT E24 304 F 1 HETATM 14 C CAI E24 . . . V 10 0.381 -13.919 -20.658 1 65.08 ? CAI E24 304 F 1 HETATM 15 C CAG E24 . . . V 10 -0.154 -12.942 -21.484 1 63.42 ? CAG E24 304 F 1 HETATM 16 C CAH E24 . . . V 10 0.343 -12.782 -22.765 1 64.5 ? CAH E24 304 F 1 HETATM 17 C CAJ E24 . . . V 10 1.378 -13.598 -23.207 1 66.15 ? CAJ E24 304 F 1 HETATM 18 C CAU E24 . . . V 10 1.943 -14.595 -22.398 1 65.63 ? CAU E24 304 F 1 HETATM 19 C CAV E24 . . . V 10 2.996 -15.372 -22.973 1 62.82 ? CAV E24 304 F 1 HETATM 20 F FAC E24 . . . V 10 2.513 -16.598 -23.429 1 62.42 ? FAC E24 304 F 1 HETATM 21 F FAD E24 . . . V 10 3.544 -14.716 -23.981 1 57.14 ? FAD E24 304 F 1 HETATM 22 F FAB E24 . . . V 10 3.952 -15.605 -22.116 1 62.83 ? FAB E24 304 F 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 338 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #