data_4YT0
#
_model_server_result.job_id            WyYGhM4cgfRqD1CVozzycA 
_model_server_result.datetime_utc      '2024-10-12 10:23:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yt0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":202}' 
#
_entry.id    4YT0 
#
_exptl.entry_id    4YT0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              269.338 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-methyl-N-[3-(1-methylethoxy)phenyl]benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YT0 
_cell.length_a            122.803 
_cell.length_b            123.392 
_cell.length_c            219.001 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YT0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O 1 1 
E,F,G,H,P,Q,R,S,T,U,V 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 O N N 
? 11 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf2 E SG CYS 191 E CYS 191 1_555 E SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 F SG CYS 89 F CYS 89 1_555 F SG CYS 94 F CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? 
metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc5 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc6 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? 
metalc ? metalc7 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc8 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc9 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc10 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc11 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? 
metalc ? metalc12 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? 
metalc ? metalc13 F SG CYS 94 F CYS 94 1_555 R FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc14 F SG CYS 97 F CYS 97 1_555 R FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? 
metalc ? metalc15 F SG CYS 109 F CYS 109 1_555 R FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc16 F SG CYS 182 F CYS 182 1_555 S FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc17 F SG CYS 188 F CYS 188 1_555 S FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc18 F SG CYS 192 F CYS 192 1_555 T FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc19 F SG CYS 239 F CYS 239 1_555 T FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc20 F SG CYS 245 F CYS 245 1_555 T FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc21 F SG CYS 249 F CYS 249 1_555 S FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc22 G NE2 HIS 131 G HIS 131 1_555 U FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc23 U FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? 
#
_chem_comp.formula           'C17 H19 N O2' 
_chem_comp.formula_weight    269.338 
_chem_comp.id                MRN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-methyl-N-[3-(1-methylethoxy)phenyl]benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     2-Methyl-N-(3-isopropoxy-phenyl)-benzamide 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C8 MRN sing 429 n n 
N C9 MRN sing 430 n n 
C1 C2 MRN sing 431 n n 
O1 C8 MRN doub 432 n n 
C2 C3 MRN doub 433 n y 
C2 C7 MRN sing 434 n y 
O2 C11 MRN sing 435 n n 
O2 C15 MRN sing 436 n n 
C3 C4 MRN sing 437 n y 
C3 C8 MRN sing 438 n n 
C4 C5 MRN doub 439 n y 
C5 C6 MRN sing 440 n y 
C6 C7 MRN doub 441 n y 
C9 C10 MRN doub 442 n y 
C9 C14 MRN sing 443 n y 
C10 C11 MRN sing 444 n y 
C11 C12 MRN doub 445 n y 
C12 C13 MRN sing 446 n y 
C13 C14 MRN doub 447 n y 
C15 C16 MRN sing 448 n n 
C15 C17 MRN sing 449 n n 
N HN MRN sing 450 n n 
C1 H1 MRN sing 451 n n 
C1 H1A MRN sing 452 n n 
C1 H1B MRN sing 453 n n 
C4 H4 MRN sing 454 n n 
C5 H5 MRN sing 455 n n 
C6 H6 MRN sing 456 n n 
C7 H7 MRN sing 457 n n 
C10 H10 MRN sing 458 n n 
C12 H12 MRN sing 459 n n 
C13 H13 MRN sing 460 n n 
C14 H14 MRN sing 461 n n 
C15 H15 MRN sing 462 n n 
C16 H16 MRN sing 463 n n 
C16 H16A MRN sing 464 n n 
C16 H16B MRN sing 465 n n 
C17 H17 MRN sing 466 n n 
C17 H17A MRN sing 467 n n 
C17 H17B MRN sing 468 n n 
#
_atom_sites.entry_id                     4YT0 
_atom_sites.fract_transf_matrix[1][1]    0.008143 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008104 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004566 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 MLI A 1 701 701 MLI MLI . 
J 6 FAD A 1 702 702 FAD FAD . 
K 7 FES B 1 301 301 FES FES . 
L 8 SF4 B 1 302 302 SF4 SF4 . 
M 9 F3S B 1 303 303 F3S F3S . 
N 10 HEM C 1 201 201 HEM HEM . 
O 11 MRN C 1 202 301 MRN DRG . 
P 5 MLI E 1 701 701 MLI MLI . 
Q 6 FAD E 1 702 702 FAD FAD . 
R 7 FES F 1 301 301 FES FES . 
S 8 SF4 F 1 302 302 SF4 SF4 . 
T 9 F3S F 1 303 303 F3S F3S . 
U 10 HEM G 1 201 201 HEM HEM . 
V 11 MRN G 1 202 301 MRN DRG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N MRN . . . O 11 -50.483 -60.519 -9.705 1 67.3 ? N MRN 202 C 1 
HETATM 2 C C1 MRN . . . O 11 -50.2 -59.978 -6.59 1 62.56 ? C1 MRN 202 C 1 
HETATM 3 O O1 MRN . . . O 11 -51.099 -62.532 -8.855 1 70.07 ? O1 MRN 202 C 1 
HETATM 4 C C2 MRN . . . O 11 -49.15 -60.835 -6.951 1 64.25 ? C2 MRN 202 C 1 
HETATM 5 O O2 MRN . . . O 11 -52.585 -60.392 -13.945 1 79.45 ? O2 MRN 202 C 1 
HETATM 6 C C3 MRN . . . O 11 -49.206 -61.611 -8.103 1 66.02 ? C3 MRN 202 C 1 
HETATM 7 C C4 MRN . . . O 11 -48.166 -62.474 -8.446 1 68.06 ? C4 MRN 202 C 1 
HETATM 8 C C5 MRN . . . O 11 -47.028 -62.566 -7.653 1 67.88 ? C5 MRN 202 C 1 
HETATM 9 C C6 MRN . . . O 11 -46.955 -61.786 -6.511 1 67.83 ? C6 MRN 202 C 1 
HETATM 10 C C7 MRN . . . O 11 -48.005 -60.927 -6.165 1 66.55 ? C7 MRN 202 C 1 
HETATM 11 C C8 MRN . . . O 11 -50.318 -61.587 -8.914 1 66.96 ? C8 MRN 202 C 1 
HETATM 12 C C9 MRN . . . O 11 -51.581 -60.549 -10.454 1 68.65 ? C9 MRN 202 C 1 
HETATM 13 C C10 MRN . . . O 11 -51.506 -60.452 -11.837 1 70.13 ? C10 MRN 202 C 1 
HETATM 14 C C11 MRN . . . O 11 -52.679 -60.496 -12.593 1 72.34 ? C11 MRN 202 C 1 
HETATM 15 C C12 MRN . . . O 11 -53.917 -60.655 -11.971 1 69.9 ? C12 MRN 202 C 1 
HETATM 16 C C13 MRN . . . O 11 -53.983 -60.758 -10.596 1 69.57 ? C13 MRN 202 C 1 
HETATM 17 C C14 MRN . . . O 11 -52.824 -60.702 -9.841 1 68.83 ? C14 MRN 202 C 1 
HETATM 18 C C15 MRN . . . O 11 -53.639 -59.666 -14.615 1 82.44 ? C15 MRN 202 C 1 
HETATM 19 C C16 MRN . . . O 11 -54.515 -60.68 -15.372 1 83.25 ? C16 MRN 202 C 1 
HETATM 20 C C17 MRN . . . O 11 -53.038 -58.637 -15.585 1 83.31 ? C17 MRN 202 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           20 
#