data_4YT0 # _model_server_result.job_id PEyZLjL6Q6hQ4GxwPAOJjw _model_server_result.datetime_utc '2024-11-25 12:15:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yt0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":702}' # _entry.id 4YT0 # _exptl.entry_id 4YT0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YT0 _cell.length_a 122.803 _cell.length_b 123.392 _cell.length_c 219.001 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YT0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O 1 1 E,F,G,H,P,Q,R,S,T,U,V 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 191 A CYS 191 1_555 A SG CYS 193 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf2 E SG CYS 191 E CYS 191 1_555 E SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 F SG CYS 89 F CYS 89 1_555 F SG CYS 94 F CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc5 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc6 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc7 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc8 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc9 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc10 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc11 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc12 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc13 F SG CYS 94 F CYS 94 1_555 R FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc14 F SG CYS 97 F CYS 97 1_555 R FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc15 F SG CYS 109 F CYS 109 1_555 R FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc16 F SG CYS 182 F CYS 182 1_555 S FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc17 F SG CYS 188 F CYS 188 1_555 S FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc18 F SG CYS 192 F CYS 192 1_555 T FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc19 F SG CYS 239 F CYS 239 1_555 T FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc20 F SG CYS 245 F CYS 245 1_555 T FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc21 F SG CYS 249 F CYS 249 1_555 S FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc22 G NE2 HIS 131 G HIS 131 1_555 U FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc23 U FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 92 n n PA O2A FAD sing 93 n n PA O5B FAD sing 94 n n PA O3P FAD sing 95 n n O2A HOA2 FAD sing 96 n n O5B C5B FAD sing 97 n n C5B C4B FAD sing 98 n n C5B H51A FAD sing 99 n n C5B H52A FAD sing 100 n n C4B O4B FAD sing 101 n n C4B C3B FAD sing 102 n n C4B H4B FAD sing 103 n n O4B C1B FAD sing 104 n n C3B O3B FAD sing 105 n n C3B C2B FAD sing 106 n n C3B H3B FAD sing 107 n n O3B HO3A FAD sing 108 n n C2B O2B FAD sing 109 n n C2B C1B FAD sing 110 n n C2B H2B FAD sing 111 n n O2B HO2A FAD sing 112 n n C1B N9A FAD sing 113 n n C1B H1B FAD sing 114 n n N9A C8A FAD sing 115 n y N9A C4A FAD sing 116 n y C8A N7A FAD doub 117 n y C8A H8A FAD sing 118 n n N7A C5A FAD sing 119 n y C5A C6A FAD sing 120 n y C5A C4A FAD doub 121 n y C6A N6A FAD sing 122 n n C6A N1A FAD doub 123 n y N6A H61A FAD sing 124 n n N6A H62A FAD sing 125 n n N1A C2A FAD sing 126 n y C2A N3A FAD doub 127 n y C2A H2A FAD sing 128 n n N3A C4A FAD sing 129 n y N1 C2 FAD sing 130 n n N1 C10 FAD doub 131 n n C2 O2 FAD doub 132 n n C2 N3 FAD sing 133 n n N3 C4 FAD sing 134 n n N3 HN3 FAD sing 135 n n C4 O4 FAD doub 136 n n C4 C4X FAD sing 137 n n C4X N5 FAD doub 138 n n C4X C10 FAD sing 139 n n N5 C5X FAD sing 140 n n C5X C6 FAD doub 141 n y C5X C9A FAD sing 142 n y C6 C7 FAD sing 143 n y C6 H6 FAD sing 144 n n C7 C7M FAD sing 145 n n C7 C8 FAD doub 146 n y C7M HM71 FAD sing 147 n n C7M HM72 FAD sing 148 n n C7M HM73 FAD sing 149 n n C8 C8M FAD sing 150 n n C8 C9 FAD sing 151 n y C8M HM81 FAD sing 152 n n C8M HM82 FAD sing 153 n n C8M HM83 FAD sing 154 n n C9 C9A FAD doub 155 n y C9 H9 FAD sing 156 n n C9A N10 FAD sing 157 n n N10 C10 FAD sing 158 n n N10 C1' FAD sing 159 n n C1' C2' FAD sing 160 n n C1' "H1'1" FAD sing 161 n n C1' "H1'2" FAD sing 162 n n C2' O2' FAD sing 163 n n C2' C3' FAD sing 164 n n C2' H2' FAD sing 165 n n O2' HO2' FAD sing 166 n n C3' O3' FAD sing 167 n n C3' C4' FAD sing 168 n n C3' H3' FAD sing 169 n n O3' HO3' FAD sing 170 n n C4' O4' FAD sing 171 n n C4' C5' FAD sing 172 n n C4' H4' FAD sing 173 n n O4' HO4' FAD sing 174 n n C5' O5' FAD sing 175 n n C5' "H5'1" FAD sing 176 n n C5' "H5'2" FAD sing 177 n n O5' P FAD sing 178 n n P O1P FAD doub 179 n n P O2P FAD sing 180 n n P O3P FAD sing 181 n n O2P HOP2 FAD sing 182 n n # _atom_sites.entry_id 4YT0 _atom_sites.fract_transf_matrix[1][1] 0.008143 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008104 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MLI A 1 701 701 MLI MLI . J 6 FAD A 1 702 702 FAD FAD . K 7 FES B 1 301 301 FES FES . L 8 SF4 B 1 302 302 SF4 SF4 . M 9 F3S B 1 303 303 F3S F3S . N 10 HEM C 1 201 201 HEM HEM . O 11 MRN C 1 202 301 MRN DRG . P 5 MLI E 1 701 701 MLI MLI . Q 6 FAD E 1 702 702 FAD FAD . R 7 FES F 1 301 301 FES FES . S 8 SF4 F 1 302 302 SF4 SF4 . T 9 F3S F 1 303 303 F3S F3S . U 10 HEM G 1 201 201 HEM HEM . V 11 MRN G 1 202 301 MRN DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . J 6 -46.209 -21.461 -15.326 1 26.38 ? PA FAD 702 A 1 HETATM 2 O O1A FAD . . . J 6 -46.441 -21.219 -16.787 1 26.75 ? O1A FAD 702 A 1 HETATM 3 O O2A FAD . . . J 6 -45.062 -22.319 -14.866 1 26.05 ? O2A FAD 702 A 1 HETATM 4 O O5B FAD . . . J 6 -47.569 -22.063 -14.73 1 26.93 ? O5B FAD 702 A 1 HETATM 5 C C5B FAD . . . J 6 -48.762 -21.276 -14.706 1 26.84 ? C5B FAD 702 A 1 HETATM 6 C C4B FAD . . . J 6 -49.637 -21.694 -13.534 1 26.6 ? C4B FAD 702 A 1 HETATM 7 O O4B FAD . . . J 6 -50.802 -20.87 -13.46 1 26.56 ? O4B FAD 702 A 1 HETATM 8 C C3B FAD . . . J 6 -50.109 -23.133 -13.684 1 26.34 ? C3B FAD 702 A 1 HETATM 9 O O3B FAD . . . J 6 -49.807 -23.875 -12.506 1 26.25 ? O3B FAD 702 A 1 HETATM 10 C C2B FAD . . . J 6 -51.598 -23.042 -13.874 1 26.26 ? C2B FAD 702 A 1 HETATM 11 O O2B FAD . . . J 6 -52.281 -24.082 -13.186 1 25.85 ? O2B FAD 702 A 1 HETATM 12 C C1B FAD . . . J 6 -51.955 -21.688 -13.297 1 26.7 ? C1B FAD 702 A 1 HETATM 13 N N9A FAD . . . J 6 -53.138 -21.169 -14.01 1 27.56 ? N9A FAD 702 A 1 HETATM 14 C C8A FAD . . . J 6 -53.219 -20.77 -15.292 1 27.79 ? C8A FAD 702 A 1 HETATM 15 N N7A FAD . . . J 6 -54.484 -20.386 -15.592 1 28.01 ? N7A FAD 702 A 1 HETATM 16 C C5A FAD . . . J 6 -55.227 -20.542 -14.487 1 28.58 ? C5A FAD 702 A 1 HETATM 17 C C6A FAD . . . J 6 -56.638 -20.326 -14.092 1 29.32 ? C6A FAD 702 A 1 HETATM 18 N N6A FAD . . . J 6 -57.562 -19.847 -14.953 1 29.36 ? N6A FAD 702 A 1 HETATM 19 N N1A FAD . . . J 6 -56.987 -20.625 -12.823 1 30.17 ? N1A FAD 702 A 1 HETATM 20 C C2A FAD . . . J 6 -56.103 -21.103 -11.922 1 30.3 ? C2A FAD 702 A 1 HETATM 21 N N3A FAD . . . J 6 -54.808 -21.322 -12.216 1 29.63 ? N3A FAD 702 A 1 HETATM 22 C C4A FAD . . . J 6 -54.329 -21.063 -13.453 1 28.49 ? C4A FAD 702 A 1 HETATM 23 N N1 FAD . . . J 6 -37.069 -20.242 -18.683 1 25.69 ? N1 FAD 702 A 1 HETATM 24 C C2 FAD . . . J 6 -35.802 -20.31 -18.2 1 25.87 ? C2 FAD 702 A 1 HETATM 25 O O2 FAD . . . J 6 -35.438 -19.421 -17.397 1 26.01 ? O2 FAD 702 A 1 HETATM 26 N N3 FAD . . . J 6 -34.933 -21.29 -18.541 1 25.65 ? N3 FAD 702 A 1 HETATM 27 C C4 FAD . . . J 6 -35.259 -22.271 -19.391 1 25.22 ? C4 FAD 702 A 1 HETATM 28 O O4 FAD . . . J 6 -34.444 -23.171 -19.7 1 24.77 ? O4 FAD 702 A 1 HETATM 29 C C4X FAD . . . J 6 -36.621 -22.257 -19.96 1 25.12 ? C4X FAD 702 A 1 HETATM 30 N N5 FAD . . . J 6 -37.009 -23.208 -20.81 1 24.96 ? N5 FAD 702 A 1 HETATM 31 C C5X FAD . . . J 6 -38.246 -23.195 -21.32 1 25.28 ? C5X FAD 702 A 1 HETATM 32 C C6 FAD . . . J 6 -38.581 -24.214 -22.199 1 25.74 ? C6 FAD 702 A 1 HETATM 33 C C7 FAD . . . J 6 -39.848 -24.258 -22.75 1 26.11 ? C7 FAD 702 A 1 HETATM 34 C C7M FAD . . . J 6 -40.254 -25.342 -23.719 1 26.34 ? C7M FAD 702 A 1 HETATM 35 C C8 FAD . . . J 6 -40.811 -23.198 -22.382 1 26.01 ? C8 FAD 702 A 1 HETATM 36 C C8M FAD . . . J 6 -42.145 -23.218 -23.01 1 25.91 ? C8M FAD 702 A 1 HETATM 37 C C9 FAD . . . J 6 -40.496 -22.17 -21.512 1 25.73 ? C9 FAD 702 A 1 HETATM 38 C C9A FAD . . . J 6 -39.227 -22.131 -20.955 1 25.37 ? C9A FAD 702 A 1 HETATM 39 N N10 FAD . . . J 6 -38.841 -21.11 -20.067 1 25.39 ? N10 FAD 702 A 1 HETATM 40 C C10 FAD . . . J 6 -37.534 -21.166 -19.55 1 25.38 ? C10 FAD 702 A 1 HETATM 41 C C1' FAD . . . J 6 -39.756 -20.043 -19.637 1 25.69 ? C1' FAD 702 A 1 HETATM 42 C C2' FAD . . . J 6 -40.277 -20.461 -18.253 1 25.96 ? C2' FAD 702 A 1 HETATM 43 O O2' FAD . . . J 6 -40.283 -21.886 -18.161 1 25.66 ? O2' FAD 702 A 1 HETATM 44 C C3' FAD . . . J 6 -41.7 -20.031 -17.903 1 26.55 ? C3' FAD 702 A 1 HETATM 45 O O3' FAD . . . J 6 -42 -18.757 -18.474 1 27.73 ? O3' FAD 702 A 1 HETATM 46 C C4' FAD . . . J 6 -41.897 -19.982 -16.387 1 26.7 ? C4' FAD 702 A 1 HETATM 47 O O4' FAD . . . J 6 -41.598 -21.276 -15.869 1 26.9 ? O4' FAD 702 A 1 HETATM 48 C C5' FAD . . . J 6 -43.319 -19.582 -15.991 1 27.01 ? C5' FAD 702 A 1 HETATM 49 O O5' FAD . . . J 6 -43.615 -19.88 -14.618 1 27.61 ? O5' FAD 702 A 1 HETATM 50 P P FAD . . . J 6 -44.951 -19.312 -13.883 1 28.76 ? P FAD 702 A 1 HETATM 51 O O1P FAD . . . J 6 -44.967 -19.74 -12.427 1 28.21 ? O1P FAD 702 A 1 HETATM 52 O O2P FAD . . . J 6 -45.116 -17.835 -14.197 1 28.69 ? O2P FAD 702 A 1 HETATM 53 O O3P FAD . . . J 6 -46.197 -20.011 -14.633 1 27.53 ? O3P FAD 702 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 433 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #