data_4YT2 # _model_server_result.job_id 1gvFrjDGdro-sgAzSPG9Cg _model_server_result.datetime_utc '2024-11-05 00:25:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yt2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4YT2 # _exptl.entry_id 4YT2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 106.12 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI(HYDROXYETHYL)ETHER _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YT2 _cell.length_a 52.52 _cell.length_b 77.81 _cell.length_c 153.54 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YT2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C4 H10 O3' _chem_comp.formula_weight 106.12 _chem_comp.id PEG _chem_comp.mon_nstd_flag . _chem_comp.name DI(HYDROXYETHYL)ETHER _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PEG sing 237 n n C1 C2 PEG sing 238 n n C1 H11 PEG sing 239 n n C1 H12 PEG sing 240 n n O1 HO1 PEG sing 241 n n C2 O2 PEG sing 242 n n C2 H21 PEG sing 243 n n C2 H22 PEG sing 244 n n O2 C3 PEG sing 245 n n C3 C4 PEG sing 246 n n C3 H31 PEG sing 247 n n C3 H32 PEG sing 248 n n C4 O4 PEG sing 249 n n C4 H41 PEG sing 250 n n C4 H42 PEG sing 251 n n O4 HO4 PEG sing 252 n n # _atom_sites.entry_id 4YT2 _atom_sites.fract_transf_matrix[1][1] 0.01904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006513 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PGE A 1 401 1 PGE PGE . D 3 PEG A 1 402 1 PEG PEG . E 3 PEG A 1 403 2 PEG PEG . F 3 PEG A 1 404 3 PEG PEG . G 4 HOH A 1 501 321 HOH HOH . G 4 HOH A 2 502 150 HOH HOH . G 4 HOH A 3 503 61 HOH HOH . G 4 HOH A 4 504 301 HOH HOH . G 4 HOH A 5 505 320 HOH HOH . G 4 HOH A 6 506 24 HOH HOH . G 4 HOH A 7 507 308 HOH HOH . G 4 HOH A 8 508 152 HOH HOH . G 4 HOH A 9 509 13 HOH HOH . G 4 HOH A 10 510 251 HOH HOH . G 4 HOH A 11 511 6 HOH HOH . G 4 HOH A 12 512 106 HOH HOH . G 4 HOH A 13 513 220 HOH HOH . G 4 HOH A 14 514 121 HOH HOH . G 4 HOH A 15 515 93 HOH HOH . G 4 HOH A 16 516 73 HOH HOH . G 4 HOH A 17 517 66 HOH HOH . G 4 HOH A 18 518 123 HOH HOH . G 4 HOH A 19 519 16 HOH HOH . G 4 HOH A 20 520 232 HOH HOH . G 4 HOH A 21 521 184 HOH HOH . G 4 HOH A 22 522 119 HOH HOH . G 4 HOH A 23 523 78 HOH HOH . G 4 HOH A 24 524 76 HOH HOH . G 4 HOH A 25 525 54 HOH HOH . G 4 HOH A 26 526 328 HOH HOH . G 4 HOH A 27 527 4 HOH HOH . G 4 HOH A 28 528 175 HOH HOH . G 4 HOH A 29 529 311 HOH HOH . G 4 HOH A 30 530 11 HOH HOH . G 4 HOH A 31 531 32 HOH HOH . G 4 HOH A 32 532 196 HOH HOH . G 4 HOH A 33 533 325 HOH HOH . G 4 HOH A 34 534 21 HOH HOH . G 4 HOH A 35 535 9 HOH HOH . G 4 HOH A 36 536 47 HOH HOH . G 4 HOH A 37 537 287 HOH HOH . G 4 HOH A 38 538 108 HOH HOH . G 4 HOH A 39 539 29 HOH HOH . G 4 HOH A 40 540 141 HOH HOH . G 4 HOH A 41 541 118 HOH HOH . G 4 HOH A 42 542 159 HOH HOH . G 4 HOH A 43 543 205 HOH HOH . G 4 HOH A 44 544 174 HOH HOH . G 4 HOH A 45 545 215 HOH HOH . G 4 HOH A 46 546 130 HOH HOH . G 4 HOH A 47 547 163 HOH HOH . G 4 HOH A 48 548 53 HOH HOH . G 4 HOH A 49 549 307 HOH HOH . G 4 HOH A 50 550 314 HOH HOH . G 4 HOH A 51 551 316 HOH HOH . G 4 HOH A 52 552 267 HOH HOH . G 4 HOH A 53 553 296 HOH HOH . G 4 HOH A 54 554 22 HOH HOH . G 4 HOH A 55 555 173 HOH HOH . G 4 HOH A 56 556 252 HOH HOH . G 4 HOH A 57 557 241 HOH HOH . G 4 HOH A 58 558 198 HOH HOH . G 4 HOH A 59 559 265 HOH HOH . G 4 HOH A 60 560 185 HOH HOH . G 4 HOH A 61 561 281 HOH HOH . G 4 HOH A 62 562 1 HOH HOH . G 4 HOH A 63 563 2 HOH HOH . G 4 HOH A 64 564 3 HOH HOH . G 4 HOH A 65 565 5 HOH HOH . G 4 HOH A 66 566 7 HOH HOH . G 4 HOH A 67 567 8 HOH HOH . G 4 HOH A 68 568 14 HOH HOH . G 4 HOH A 69 569 15 HOH HOH . G 4 HOH A 70 570 17 HOH HOH . G 4 HOH A 71 571 18 HOH HOH . G 4 HOH A 72 572 19 HOH HOH . G 4 HOH A 73 573 23 HOH HOH . G 4 HOH A 74 574 25 HOH HOH . G 4 HOH A 75 575 26 HOH HOH . G 4 HOH A 76 576 27 HOH HOH . G 4 HOH A 77 577 28 HOH HOH . G 4 HOH A 78 578 38 HOH HOH . G 4 HOH A 79 579 39 HOH HOH . G 4 HOH A 80 580 44 HOH HOH . G 4 HOH A 81 581 50 HOH HOH . G 4 HOH A 82 582 56 HOH HOH . G 4 HOH A 83 583 58 HOH HOH . G 4 HOH A 84 584 62 HOH HOH . G 4 HOH A 85 585 69 HOH HOH . G 4 HOH A 86 586 70 HOH HOH . G 4 HOH A 87 587 79 HOH HOH . G 4 HOH A 88 588 80 HOH HOH . G 4 HOH A 89 589 81 HOH HOH . G 4 HOH A 90 590 83 HOH HOH . G 4 HOH A 91 591 86 HOH HOH . G 4 HOH A 92 592 89 HOH HOH . G 4 HOH A 93 593 91 HOH HOH . G 4 HOH A 94 594 94 HOH HOH . G 4 HOH A 95 595 99 HOH HOH . G 4 HOH A 96 596 107 HOH HOH . G 4 HOH A 97 597 110 HOH HOH . G 4 HOH A 98 598 111 HOH HOH . G 4 HOH A 99 599 112 HOH HOH . G 4 HOH A 100 600 114 HOH HOH . G 4 HOH A 101 601 120 HOH HOH . G 4 HOH A 102 602 124 HOH HOH . G 4 HOH A 103 603 125 HOH HOH . G 4 HOH A 104 604 127 HOH HOH . G 4 HOH A 105 605 128 HOH HOH . G 4 HOH A 106 606 132 HOH HOH . G 4 HOH A 107 607 134 HOH HOH . G 4 HOH A 108 608 136 HOH HOH . G 4 HOH A 109 609 139 HOH HOH . G 4 HOH A 110 610 140 HOH HOH . G 4 HOH A 111 611 142 HOH HOH . G 4 HOH A 112 612 143 HOH HOH . G 4 HOH A 113 613 145 HOH HOH . G 4 HOH A 114 614 147 HOH HOH . G 4 HOH A 115 615 148 HOH HOH . G 4 HOH A 116 616 151 HOH HOH . G 4 HOH A 117 617 153 HOH HOH . G 4 HOH A 118 618 156 HOH HOH . G 4 HOH A 119 619 157 HOH HOH . G 4 HOH A 120 620 160 HOH HOH . G 4 HOH A 121 621 161 HOH HOH . G 4 HOH A 122 622 162 HOH HOH . G 4 HOH A 123 623 164 HOH HOH . G 4 HOH A 124 624 166 HOH HOH . G 4 HOH A 125 625 168 HOH HOH . G 4 HOH A 126 626 169 HOH HOH . G 4 HOH A 127 627 171 HOH HOH . G 4 HOH A 128 628 177 HOH HOH . G 4 HOH A 129 629 180 HOH HOH . G 4 HOH A 130 630 182 HOH HOH . G 4 HOH A 131 631 187 HOH HOH . G 4 HOH A 132 632 193 HOH HOH . G 4 HOH A 133 633 194 HOH HOH . G 4 HOH A 134 634 197 HOH HOH . G 4 HOH A 135 635 206 HOH HOH . G 4 HOH A 136 636 208 HOH HOH . G 4 HOH A 137 637 216 HOH HOH . G 4 HOH A 138 638 217 HOH HOH . G 4 HOH A 139 639 221 HOH HOH . G 4 HOH A 140 640 231 HOH HOH . G 4 HOH A 141 641 234 HOH HOH . G 4 HOH A 142 642 235 HOH HOH . G 4 HOH A 143 643 236 HOH HOH . G 4 HOH A 144 644 237 HOH HOH . G 4 HOH A 145 645 238 HOH HOH . G 4 HOH A 146 646 240 HOH HOH . G 4 HOH A 147 647 246 HOH HOH . G 4 HOH A 148 648 250 HOH HOH . G 4 HOH A 149 649 254 HOH HOH . G 4 HOH A 150 650 255 HOH HOH . G 4 HOH A 151 651 261 HOH HOH . G 4 HOH A 152 652 262 HOH HOH . G 4 HOH A 153 653 264 HOH HOH . G 4 HOH A 154 654 271 HOH HOH . G 4 HOH A 155 655 272 HOH HOH . G 4 HOH A 156 656 284 HOH HOH . G 4 HOH A 157 657 290 HOH HOH . G 4 HOH A 158 658 294 HOH HOH . G 4 HOH A 159 659 295 HOH HOH . G 4 HOH A 160 660 297 HOH HOH . G 4 HOH A 161 661 299 HOH HOH . G 4 HOH A 162 662 300 HOH HOH . G 4 HOH A 163 663 305 HOH HOH . G 4 HOH A 164 664 306 HOH HOH . G 4 HOH A 165 665 309 HOH HOH . G 4 HOH A 166 666 310 HOH HOH . G 4 HOH A 167 667 312 HOH HOH . G 4 HOH A 168 668 317 HOH HOH . G 4 HOH A 169 669 318 HOH HOH . G 4 HOH A 170 670 324 HOH HOH . G 4 HOH A 171 671 326 HOH HOH . H 4 HOH B 1 401 298 HOH HOH . H 4 HOH B 2 402 46 HOH HOH . H 4 HOH B 3 403 192 HOH HOH . H 4 HOH B 4 404 144 HOH HOH . H 4 HOH B 5 405 43 HOH HOH . H 4 HOH B 6 406 266 HOH HOH . H 4 HOH B 7 407 45 HOH HOH . H 4 HOH B 8 408 52 HOH HOH . H 4 HOH B 9 409 190 HOH HOH . H 4 HOH B 10 410 30 HOH HOH . H 4 HOH B 11 411 60 HOH HOH . H 4 HOH B 12 412 209 HOH HOH . H 4 HOH B 13 413 133 HOH HOH . H 4 HOH B 14 414 315 HOH HOH . H 4 HOH B 15 415 207 HOH HOH . H 4 HOH B 16 416 88 HOH HOH . H 4 HOH B 17 417 63 HOH HOH . H 4 HOH B 18 418 77 HOH HOH . H 4 HOH B 19 419 68 HOH HOH . H 4 HOH B 20 420 170 HOH HOH . H 4 HOH B 21 421 95 HOH HOH . H 4 HOH B 22 422 275 HOH HOH . H 4 HOH B 23 423 233 HOH HOH . H 4 HOH B 24 424 293 HOH HOH . H 4 HOH B 25 425 137 HOH HOH . H 4 HOH B 26 426 219 HOH HOH . H 4 HOH B 27 427 155 HOH HOH . H 4 HOH B 28 428 85 HOH HOH . H 4 HOH B 29 429 41 HOH HOH . H 4 HOH B 30 430 103 HOH HOH . H 4 HOH B 31 431 48 HOH HOH . H 4 HOH B 32 432 222 HOH HOH . H 4 HOH B 33 433 90 HOH HOH . H 4 HOH B 34 434 313 HOH HOH . H 4 HOH B 35 435 292 HOH HOH . H 4 HOH B 36 436 40 HOH HOH . H 4 HOH B 37 437 126 HOH HOH . H 4 HOH B 38 438 253 HOH HOH . H 4 HOH B 39 439 67 HOH HOH . H 4 HOH B 40 440 282 HOH HOH . H 4 HOH B 41 441 10 HOH HOH . H 4 HOH B 42 442 12 HOH HOH . H 4 HOH B 43 443 20 HOH HOH . H 4 HOH B 44 444 31 HOH HOH . H 4 HOH B 45 445 33 HOH HOH . H 4 HOH B 46 446 34 HOH HOH . H 4 HOH B 47 447 35 HOH HOH . H 4 HOH B 48 448 36 HOH HOH . H 4 HOH B 49 449 37 HOH HOH . H 4 HOH B 50 450 42 HOH HOH . H 4 HOH B 51 451 49 HOH HOH . H 4 HOH B 52 452 51 HOH HOH . H 4 HOH B 53 453 55 HOH HOH . H 4 HOH B 54 454 57 HOH HOH . H 4 HOH B 55 455 59 HOH HOH . H 4 HOH B 56 456 64 HOH HOH . H 4 HOH B 57 457 65 HOH HOH . H 4 HOH B 58 458 71 HOH HOH . H 4 HOH B 59 459 72 HOH HOH . H 4 HOH B 60 460 74 HOH HOH . H 4 HOH B 61 461 75 HOH HOH . H 4 HOH B 62 462 82 HOH HOH . H 4 HOH B 63 463 84 HOH HOH . H 4 HOH B 64 464 87 HOH HOH . H 4 HOH B 65 465 92 HOH HOH . H 4 HOH B 66 466 96 HOH HOH . H 4 HOH B 67 467 97 HOH HOH . H 4 HOH B 68 468 98 HOH HOH . H 4 HOH B 69 469 100 HOH HOH . H 4 HOH B 70 470 101 HOH HOH . H 4 HOH B 71 471 102 HOH HOH . H 4 HOH B 72 472 104 HOH HOH . H 4 HOH B 73 473 105 HOH HOH . H 4 HOH B 74 474 109 HOH HOH . H 4 HOH B 75 475 113 HOH HOH . H 4 HOH B 76 476 115 HOH HOH . H 4 HOH B 77 477 116 HOH HOH . H 4 HOH B 78 478 117 HOH HOH . H 4 HOH B 79 479 122 HOH HOH . H 4 HOH B 80 480 129 HOH HOH . H 4 HOH B 81 481 131 HOH HOH . H 4 HOH B 82 482 135 HOH HOH . H 4 HOH B 83 483 138 HOH HOH . H 4 HOH B 84 484 146 HOH HOH . H 4 HOH B 85 485 149 HOH HOH . H 4 HOH B 86 486 154 HOH HOH . H 4 HOH B 87 487 158 HOH HOH . H 4 HOH B 88 488 165 HOH HOH . H 4 HOH B 89 489 167 HOH HOH . H 4 HOH B 90 490 172 HOH HOH . H 4 HOH B 91 491 176 HOH HOH . H 4 HOH B 92 492 178 HOH HOH . H 4 HOH B 93 493 179 HOH HOH . H 4 HOH B 94 494 181 HOH HOH . H 4 HOH B 95 495 183 HOH HOH . H 4 HOH B 96 496 186 HOH HOH . H 4 HOH B 97 497 188 HOH HOH . H 4 HOH B 98 498 189 HOH HOH . H 4 HOH B 99 499 195 HOH HOH . H 4 HOH B 100 500 199 HOH HOH . H 4 HOH B 101 501 200 HOH HOH . H 4 HOH B 102 502 201 HOH HOH . H 4 HOH B 103 503 202 HOH HOH . H 4 HOH B 104 504 203 HOH HOH . H 4 HOH B 105 505 204 HOH HOH . H 4 HOH B 106 506 210 HOH HOH . H 4 HOH B 107 507 211 HOH HOH . H 4 HOH B 108 508 212 HOH HOH . H 4 HOH B 109 509 213 HOH HOH . H 4 HOH B 110 510 214 HOH HOH . H 4 HOH B 111 511 218 HOH HOH . H 4 HOH B 112 512 223 HOH HOH . H 4 HOH B 113 513 224 HOH HOH . H 4 HOH B 114 514 225 HOH HOH . H 4 HOH B 115 515 226 HOH HOH . H 4 HOH B 116 516 227 HOH HOH . H 4 HOH B 117 517 228 HOH HOH . H 4 HOH B 118 518 229 HOH HOH . H 4 HOH B 119 519 230 HOH HOH . H 4 HOH B 120 520 239 HOH HOH . H 4 HOH B 121 521 242 HOH HOH . H 4 HOH B 122 522 244 HOH HOH . H 4 HOH B 123 523 245 HOH HOH . H 4 HOH B 124 524 247 HOH HOH . H 4 HOH B 125 525 249 HOH HOH . H 4 HOH B 126 526 256 HOH HOH . H 4 HOH B 127 527 257 HOH HOH . H 4 HOH B 128 528 258 HOH HOH . H 4 HOH B 129 529 259 HOH HOH . H 4 HOH B 130 530 260 HOH HOH . H 4 HOH B 131 531 263 HOH HOH . H 4 HOH B 132 532 268 HOH HOH . H 4 HOH B 133 533 270 HOH HOH . H 4 HOH B 134 534 273 HOH HOH . H 4 HOH B 135 535 274 HOH HOH . H 4 HOH B 136 536 276 HOH HOH . H 4 HOH B 137 537 277 HOH HOH . H 4 HOH B 138 538 278 HOH HOH . H 4 HOH B 139 539 279 HOH HOH . H 4 HOH B 140 540 280 HOH HOH . H 4 HOH B 141 541 283 HOH HOH . H 4 HOH B 142 542 285 HOH HOH . H 4 HOH B 143 543 286 HOH HOH . H 4 HOH B 144 544 288 HOH HOH . H 4 HOH B 145 545 289 HOH HOH . H 4 HOH B 146 546 302 HOH HOH . H 4 HOH B 147 547 303 HOH HOH . H 4 HOH B 148 548 304 HOH HOH . H 4 HOH B 149 549 319 HOH HOH . H 4 HOH B 150 550 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PEG . . . D 3 30.388 -47.523 -35.468 1 40.25 ? C1 PEG 402 A 1 HETATM 2 O O1 PEG . . . D 3 29.236 -48.347 -35.33 1 49.19 ? O1 PEG 402 A 1 HETATM 3 C C2 PEG . . . D 3 30.158 -46.108 -34.866 1 53.79 ? C2 PEG 402 A 1 HETATM 4 O O2 PEG . . . D 3 31.032 -45.994 -33.727 1 46.17 ? O2 PEG 402 A 1 HETATM 5 C C3 PEG . . . D 3 31.87 -44.822 -33.643 1 57.85 ? C3 PEG 402 A 1 HETATM 6 C C4 PEG . . . D 3 33.262 -45.213 -33.137 1 59.64 ? C4 PEG 402 A 1 HETATM 7 O O4 PEG . . . D 3 33.218 -45.75 -31.823 1 60.9 ? O4 PEG 402 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #