data_4YTC # _model_server_result.job_id z2Xrb-TXYpM0xF5KtV_AMg _model_server_result.datetime_utc '2024-11-22 01:15:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ytc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 4YTC # _exptl.entry_id 4YTC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 344.373 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~3~-phenyl-1-[6-(phenylamino)pyrimidin-4-yl]-1H-1,2,4-triazole-3,5-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YTC _cell.length_a 94.569 _cell.length_b 101.516 _cell.length_c 68.377 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YTC _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 170 A GLU 1006 1_555 A N PTR 171 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C PTR 171 A PTR 1007 1_555 A N PTR 172 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale3 A C PTR 172 A PTR 1008 1_555 A N LYS 173 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 ? # _chem_comp.formula 'C18 H16 N8' _chem_comp.formula_weight 344.373 _chem_comp.id 4HW _chem_comp.mon_nstd_flag . _chem_comp.name N~3~-phenyl-1-[6-(phenylamino)pyrimidin-4-yl]-1H-1,2,4-triazole-3,5-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N7 C10 4HW sing 1 n n C10 N4 4HW doub 2 n y C10 N3 4HW sing 3 n y N1 C9 4HW doub 4 n y N1 C8 4HW sing 5 n y C9 N2 4HW sing 6 n y N4 C11 4HW sing 7 n y N3 C8 4HW sing 8 n n N3 N5 4HW sing 9 n y N2 C6 4HW doub 10 n y C8 C7 4HW doub 11 n y C11 N5 4HW doub 12 n y C11 N6 4HW sing 13 n n N6 C12 4HW sing 14 n n C6 C7 4HW sing 15 n y C6 N 4HW sing 16 n n N C3 4HW sing 17 n n C4 C5 4HW doub 18 n y C4 C3 4HW sing 19 n y C12 C13 4HW doub 20 n y C12 C17 4HW sing 21 n y C5 C 4HW sing 22 n y C13 C14 4HW sing 23 n y C3 C2 4HW doub 24 n y C17 C16 4HW doub 25 n y C14 C15 4HW doub 26 n y C C1 4HW doub 27 n y C2 C1 4HW sing 28 n y C16 C15 4HW sing 29 n y C1 H1 4HW sing 30 n n C2 H2 4HW sing 31 n n C7 H3 4HW sing 32 n n C5 H4 4HW sing 33 n n C4 H5 4HW sing 34 n n C9 H6 4HW sing 35 n n N7 H7 4HW sing 36 n n N7 H8 4HW sing 37 n n N6 H9 4HW sing 38 n n C17 H10 4HW sing 39 n n C16 H11 4HW sing 40 n n C15 H12 4HW sing 41 n n C14 H13 4HW sing 42 n n C13 H14 4HW sing 43 n n N H15 4HW sing 44 n n C H16 4HW sing 45 n n # _atom_sites.entry_id 4YTC _atom_sites.fract_transf_matrix[1][1] 0.010574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009851 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4HW A 1 4000 4000 4HW 250 . C 3 HOH A 1 4101 4 HOH HOH . C 3 HOH A 2 4102 17 HOH HOH . C 3 HOH A 3 4103 9 HOH HOH . C 3 HOH A 4 4104 39 HOH HOH . C 3 HOH A 5 4105 31 HOH HOH . C 3 HOH A 6 4106 70 HOH HOH . C 3 HOH A 7 4107 32 HOH HOH . C 3 HOH A 8 4108 59 HOH HOH . C 3 HOH A 9 4109 63 HOH HOH . C 3 HOH A 10 4110 21 HOH HOH . C 3 HOH A 11 4111 97 HOH HOH . C 3 HOH A 12 4112 55 HOH HOH . C 3 HOH A 13 4113 40 HOH HOH . C 3 HOH A 14 4114 88 HOH HOH . C 3 HOH A 15 4115 94 HOH HOH . C 3 HOH A 16 4116 37 HOH HOH . C 3 HOH A 17 4117 75 HOH HOH . C 3 HOH A 18 4118 49 HOH HOH . C 3 HOH A 19 4119 74 HOH HOH . C 3 HOH A 20 4120 96 HOH HOH . C 3 HOH A 21 4121 51 HOH HOH . C 3 HOH A 22 4122 29 HOH HOH . C 3 HOH A 23 4123 56 HOH HOH . C 3 HOH A 24 4124 87 HOH HOH . C 3 HOH A 25 4125 11 HOH HOH . C 3 HOH A 26 4126 23 HOH HOH . C 3 HOH A 27 4127 46 HOH HOH . C 3 HOH A 28 4128 19 HOH HOH . C 3 HOH A 29 4129 33 HOH HOH . C 3 HOH A 30 4130 84 HOH HOH . C 3 HOH A 31 4131 6 HOH HOH . C 3 HOH A 32 4132 61 HOH HOH . C 3 HOH A 33 4133 64 HOH HOH . C 3 HOH A 34 4134 80 HOH HOH . C 3 HOH A 35 4135 50 HOH HOH . C 3 HOH A 36 4136 1 HOH HOH . C 3 HOH A 37 4137 53 HOH HOH . C 3 HOH A 38 4138 38 HOH HOH . C 3 HOH A 39 4139 65 HOH HOH . C 3 HOH A 40 4140 77 HOH HOH . C 3 HOH A 41 4141 62 HOH HOH . C 3 HOH A 42 4142 15 HOH HOH . C 3 HOH A 43 4143 93 HOH HOH . C 3 HOH A 44 4144 42 HOH HOH . C 3 HOH A 45 4145 57 HOH HOH . C 3 HOH A 46 4146 91 HOH HOH . C 3 HOH A 47 4147 16 HOH HOH . C 3 HOH A 48 4148 3 HOH HOH . C 3 HOH A 49 4149 10 HOH HOH . C 3 HOH A 50 4150 73 HOH HOH . C 3 HOH A 51 4151 13 HOH HOH . C 3 HOH A 52 4152 67 HOH HOH . C 3 HOH A 53 4153 25 HOH HOH . C 3 HOH A 54 4154 47 HOH HOH . C 3 HOH A 55 4155 86 HOH HOH . C 3 HOH A 56 4156 66 HOH HOH . C 3 HOH A 57 4157 41 HOH HOH . C 3 HOH A 58 4158 81 HOH HOH . C 3 HOH A 59 4159 14 HOH HOH . C 3 HOH A 60 4160 45 HOH HOH . C 3 HOH A 61 4161 52 HOH HOH . C 3 HOH A 62 4162 34 HOH HOH . C 3 HOH A 63 4163 35 HOH HOH . C 3 HOH A 64 4164 18 HOH HOH . C 3 HOH A 65 4165 2 HOH HOH . C 3 HOH A 66 4166 58 HOH HOH . C 3 HOH A 67 4167 28 HOH HOH . C 3 HOH A 68 4168 92 HOH HOH . C 3 HOH A 69 4169 36 HOH HOH . C 3 HOH A 70 4170 60 HOH HOH . C 3 HOH A 71 4171 12 HOH HOH . C 3 HOH A 72 4172 54 HOH HOH . C 3 HOH A 73 4173 5 HOH HOH . C 3 HOH A 74 4174 76 HOH HOH . C 3 HOH A 75 4175 22 HOH HOH . C 3 HOH A 76 4176 8 HOH HOH . C 3 HOH A 77 4177 43 HOH HOH . C 3 HOH A 78 4178 78 HOH HOH . C 3 HOH A 79 4179 7 HOH HOH . C 3 HOH A 80 4180 68 HOH HOH . C 3 HOH A 81 4181 83 HOH HOH . C 3 HOH A 82 4182 85 HOH HOH . C 3 HOH A 83 4183 48 HOH HOH . C 3 HOH A 84 4184 44 HOH HOH . C 3 HOH A 85 4185 82 HOH HOH . C 3 HOH A 86 4186 24 HOH HOH . C 3 HOH A 87 4187 69 HOH HOH . C 3 HOH A 88 4188 30 HOH HOH . C 3 HOH A 89 4189 95 HOH HOH . C 3 HOH A 90 4190 20 HOH HOH . C 3 HOH A 91 4191 27 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 4HW . . . B 2 16.634 13.207 5.633 1 40.95 ? C1 4HW 4000 A 1 HETATM 2 C C2 4HW . . . B 2 15.417 13.752 5.228 1 39.46 ? C2 4HW 4000 A 1 HETATM 3 C C3 4HW . . . B 2 15.389 14.814 4.319 1 38.62 ? C3 4HW 4000 A 1 HETATM 4 N N1 4HW . . . B 2 11.376 12.974 1.638 1 33.02 ? N1 4HW 4000 A 1 HETATM 5 C C7 4HW . . . B 2 13.253 13.117 3.152 1 33.47 ? C7 4HW 4000 A 1 HETATM 6 C C6 4HW . . . B 2 13.174 14.509 3.051 1 34.91 ? C6 4HW 4000 A 1 HETATM 7 N N2 4HW . . . B 2 12.208 15.133 2.341 1 34.55 ? N2 4HW 4000 A 1 HETATM 8 C C5 4HW . . . B 2 17.805 14.779 4.252 1 39.59 ? C5 4HW 4000 A 1 HETATM 9 C C4 4HW . . . B 2 16.591 15.343 3.852 1 38.41 ? C4 4HW 4000 A 1 HETATM 10 C C8 4HW . . . B 2 12.343 12.397 2.375 1 31.91 ? C8 4HW 4000 A 1 HETATM 11 C C9 4HW . . . B 2 11.366 14.317 1.684 1 33.36 ? C9 4HW 4000 A 1 HETATM 12 N N7 4HW . . . B 2 10.857 10.331 0.642 1 23.3 ? N7 4HW 4000 A 1 HETATM 13 C C10 4HW . . . B 2 11.843 10.058 1.496 1 26.1 ? C10 4HW 4000 A 1 HETATM 14 N N4 4HW . . . B 2 12.399 8.857 1.704 1 25.35 ? N4 4HW 4000 A 1 HETATM 15 C C11 4HW . . . B 2 13.431 9.125 2.568 1 24.96 ? C11 4HW 4000 A 1 HETATM 16 N N6 4HW . . . B 2 14.248 8.105 3.016 1 23.6 ? N6 4HW 4000 A 1 HETATM 17 C C12 4HW . . . B 2 15.387 8.113 3.871 1 25.99 ? C12 4HW 4000 A 1 HETATM 18 C C17 4HW . . . B 2 15.959 9.292 4.367 1 25.59 ? C17 4HW 4000 A 1 HETATM 19 C C16 4HW . . . B 2 17.045 9.223 5.245 1 26.4 ? C16 4HW 4000 A 1 HETATM 20 C C15 4HW . . . B 2 17.56 7.986 5.629 1 23.85 ? C15 4HW 4000 A 1 HETATM 21 C C14 4HW . . . B 2 17.004 6.823 5.135 1 22.13 ? C14 4HW 4000 A 1 HETATM 22 C C13 4HW . . . B 2 15.921 6.877 4.254 1 24 ? C13 4HW 4000 A 1 HETATM 23 N N5 4HW . . . B 2 13.532 10.398 2.912 1 27.23 ? N5 4HW 4000 A 1 HETATM 24 N N3 4HW . . . B 2 12.497 11.006 2.213 1 29.12 ? N3 4HW 4000 A 1 HETATM 25 N N 4HW . . . B 2 14.265 15.199 3.55 1 38.07 ? N 4HW 4000 A 1 HETATM 26 C C 4HW . . . B 2 17.825 13.713 5.138 1 40.4 ? C 4HW 4000 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 269 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #