data_4YTH # _model_server_result.job_id A16VGocaFlqXXlwoSqzaxw _model_server_result.datetime_utc '2024-11-26 13:57:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yth # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4000}' # _entry.id 4YTH # _exptl.entry_id 4YTH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 430.787 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N~2~-[2-(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)-5-fluoropyrimidin-4-yl]-2-methyl-N-(2,2,2-trifluoroethyl)-D-alaninamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YTH _cell.length_a 95.77 _cell.length_b 99.93 _cell.length_c 68.62 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YTH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 170 A GLU 1006 1_555 A N PTR 171 A PTR 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 A C PTR 171 A PTR 1007 1_555 A N PTR 172 A PTR 1008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C PTR 172 A PTR 1008 1_555 A N LYS 173 A LYS 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? # _chem_comp.formula 'C17 H15 Cl F4 N6 O' _chem_comp.formula_weight 430.787 _chem_comp.id 467 _chem_comp.mon_nstd_flag . _chem_comp.name N~2~-[2-(5-chloro-1H-pyrrolo[2,3-b]pyridin-3-yl)-5-fluoropyrimidin-4-yl]-2-methyl-N-(2,2,2-trifluoroethyl)-D-alaninamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F C5 467 sing 1 n n F2 C5 467 sing 2 n n C5 F1 467 sing 3 n n C5 C4 467 sing 4 n n N4 C11 467 sing 5 n y N4 C12 467 sing 6 n y C11 C10 467 doub 7 n y C12 N5 467 doub 8 n y C12 C13 467 sing 9 n y N5 C16 467 sing 10 n y C4 N 467 sing 11 n n N2 C9 467 doub 12 n y N2 C8 467 sing 13 n y C10 C13 467 sing 14 n y C10 C9 467 sing 15 n n C13 C14 467 doub 16 n y C16 C15 467 doub 17 n y C9 N3 467 sing 18 n y C8 C7 467 doub 19 n y C15 C14 467 sing 20 n y C15 CL 467 sing 21 n n N C3 467 sing 22 n n N3 C6 467 doub 23 n y C7 C6 467 sing 24 n y C7 F3 467 sing 25 n n C6 N1 467 sing 26 n n O C3 467 doub 27 n n C3 C1 467 sing 28 n n N1 C1 467 sing 29 n n C1 C2 467 sing 30 n n C1 C 467 sing 31 n n C8 H1 467 sing 32 n n N1 H2 467 sing 33 n n C2 H3 467 sing 34 n n C2 H4 467 sing 35 n n C2 H5 467 sing 36 n n N H6 467 sing 37 n n C4 H7 467 sing 38 n n C4 H8 467 sing 39 n n C H9 467 sing 40 n n C H10 467 sing 41 n n C H11 467 sing 42 n n C14 H12 467 sing 43 n n C16 H13 467 sing 44 n n N4 H14 467 sing 45 n n C11 H15 467 sing 46 n n # _atom_sites.entry_id 4YTH _atom_sites.fract_transf_matrix[1][1] 0.010442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014573 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 467 A 1 4000 4000 467 467 . C 3 HOH A 1 4101 37 HOH HOH . C 3 HOH A 2 4102 30 HOH HOH . C 3 HOH A 3 4103 13 HOH HOH . C 3 HOH A 4 4104 6 HOH HOH . C 3 HOH A 5 4105 12 HOH HOH . C 3 HOH A 6 4106 26 HOH HOH . C 3 HOH A 7 4107 10 HOH HOH . C 3 HOH A 8 4108 31 HOH HOH . C 3 HOH A 9 4109 21 HOH HOH . C 3 HOH A 10 4110 36 HOH HOH . C 3 HOH A 11 4111 77 HOH HOH . C 3 HOH A 12 4112 44 HOH HOH . C 3 HOH A 13 4113 100 HOH HOH . C 3 HOH A 14 4114 110 HOH HOH . C 3 HOH A 15 4115 109 HOH HOH . C 3 HOH A 16 4116 28 HOH HOH . C 3 HOH A 17 4117 66 HOH HOH . C 3 HOH A 18 4118 53 HOH HOH . C 3 HOH A 19 4119 137 HOH HOH . C 3 HOH A 20 4120 9 HOH HOH . C 3 HOH A 21 4121 5 HOH HOH . C 3 HOH A 22 4122 69 HOH HOH . C 3 HOH A 23 4123 128 HOH HOH . C 3 HOH A 24 4124 57 HOH HOH . C 3 HOH A 25 4125 67 HOH HOH . C 3 HOH A 26 4126 38 HOH HOH . C 3 HOH A 27 4127 22 HOH HOH . C 3 HOH A 28 4128 47 HOH HOH . C 3 HOH A 29 4129 115 HOH HOH . C 3 HOH A 30 4130 135 HOH HOH . C 3 HOH A 31 4131 73 HOH HOH . C 3 HOH A 32 4132 62 HOH HOH . C 3 HOH A 33 4133 52 HOH HOH . C 3 HOH A 34 4134 41 HOH HOH . C 3 HOH A 35 4135 50 HOH HOH . C 3 HOH A 36 4136 85 HOH HOH . C 3 HOH A 37 4137 64 HOH HOH . C 3 HOH A 38 4138 83 HOH HOH . C 3 HOH A 39 4139 33 HOH HOH . C 3 HOH A 40 4140 61 HOH HOH . C 3 HOH A 41 4141 99 HOH HOH . C 3 HOH A 42 4142 11 HOH HOH . C 3 HOH A 43 4143 80 HOH HOH . C 3 HOH A 44 4144 32 HOH HOH . C 3 HOH A 45 4145 70 HOH HOH . C 3 HOH A 46 4146 25 HOH HOH . C 3 HOH A 47 4147 129 HOH HOH . C 3 HOH A 48 4148 16 HOH HOH . C 3 HOH A 49 4149 54 HOH HOH . C 3 HOH A 50 4150 136 HOH HOH . C 3 HOH A 51 4151 93 HOH HOH . C 3 HOH A 52 4152 118 HOH HOH . C 3 HOH A 53 4153 3 HOH HOH . C 3 HOH A 54 4154 20 HOH HOH . C 3 HOH A 55 4155 65 HOH HOH . C 3 HOH A 56 4156 7 HOH HOH . C 3 HOH A 57 4157 119 HOH HOH . C 3 HOH A 58 4158 117 HOH HOH . C 3 HOH A 59 4159 42 HOH HOH . C 3 HOH A 60 4160 92 HOH HOH . C 3 HOH A 61 4161 14 HOH HOH . C 3 HOH A 62 4162 101 HOH HOH . C 3 HOH A 63 4163 112 HOH HOH . C 3 HOH A 64 4164 51 HOH HOH . C 3 HOH A 65 4165 126 HOH HOH . C 3 HOH A 66 4166 113 HOH HOH . C 3 HOH A 67 4167 2 HOH HOH . C 3 HOH A 68 4168 45 HOH HOH . C 3 HOH A 69 4169 88 HOH HOH . C 3 HOH A 70 4170 96 HOH HOH . C 3 HOH A 71 4171 18 HOH HOH . C 3 HOH A 72 4172 43 HOH HOH . C 3 HOH A 73 4173 48 HOH HOH . C 3 HOH A 74 4174 134 HOH HOH . C 3 HOH A 75 4175 81 HOH HOH . C 3 HOH A 76 4176 29 HOH HOH . C 3 HOH A 77 4177 114 HOH HOH . C 3 HOH A 78 4178 35 HOH HOH . C 3 HOH A 79 4179 98 HOH HOH . C 3 HOH A 80 4180 4 HOH HOH . C 3 HOH A 81 4181 23 HOH HOH . C 3 HOH A 82 4182 131 HOH HOH . C 3 HOH A 83 4183 27 HOH HOH . C 3 HOH A 84 4184 71 HOH HOH . C 3 HOH A 85 4185 130 HOH HOH . C 3 HOH A 86 4186 87 HOH HOH . C 3 HOH A 87 4187 102 HOH HOH . C 3 HOH A 88 4188 84 HOH HOH . C 3 HOH A 89 4189 24 HOH HOH . C 3 HOH A 90 4190 122 HOH HOH . C 3 HOH A 91 4191 89 HOH HOH . C 3 HOH A 92 4192 76 HOH HOH . C 3 HOH A 93 4193 63 HOH HOH . C 3 HOH A 94 4194 104 HOH HOH . C 3 HOH A 95 4195 125 HOH HOH . C 3 HOH A 96 4196 82 HOH HOH . C 3 HOH A 97 4197 120 HOH HOH . C 3 HOH A 98 4198 56 HOH HOH . C 3 HOH A 99 4199 72 HOH HOH . C 3 HOH A 100 4200 59 HOH HOH . C 3 HOH A 101 4201 91 HOH HOH . C 3 HOH A 102 4202 1 HOH HOH . C 3 HOH A 103 4203 90 HOH HOH . C 3 HOH A 104 4204 68 HOH HOH . C 3 HOH A 105 4205 97 HOH HOH . C 3 HOH A 106 4206 17 HOH HOH . C 3 HOH A 107 4207 86 HOH HOH . C 3 HOH A 108 4208 74 HOH HOH . C 3 HOH A 109 4209 58 HOH HOH . C 3 HOH A 110 4210 94 HOH HOH . C 3 HOH A 111 4211 15 HOH HOH . C 3 HOH A 112 4212 124 HOH HOH . C 3 HOH A 113 4213 95 HOH HOH . C 3 HOH A 114 4214 133 HOH HOH . C 3 HOH A 115 4215 60 HOH HOH . C 3 HOH A 116 4216 79 HOH HOH . C 3 HOH A 117 4217 19 HOH HOH . C 3 HOH A 118 4218 46 HOH HOH . C 3 HOH A 119 4219 111 HOH HOH . C 3 HOH A 120 4220 8 HOH HOH . C 3 HOH A 121 4221 75 HOH HOH . C 3 HOH A 122 4222 138 HOH HOH . C 3 HOH A 123 4223 103 HOH HOH . C 3 HOH A 124 4224 105 HOH HOH . C 3 HOH A 125 4225 39 HOH HOH . C 3 HOH A 126 4226 107 HOH HOH . C 3 HOH A 127 4227 106 HOH HOH . C 3 HOH A 128 4228 108 HOH HOH . C 3 HOH A 129 4229 40 HOH HOH . C 3 HOH A 130 4230 34 HOH HOH . C 3 HOH A 131 4231 139 HOH HOH . C 3 HOH A 132 4232 116 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 F F3 467 . . . B 2 12.263 17.424 4.486 1 27.5 ? F3 467 4000 A 1 HETATM 2 C C7 467 . . . B 2 12.215 16.173 3.975 1 24.42 ? C7 467 4000 A 1 HETATM 3 C C8 467 . . . B 2 11.247 15.804 3.016 1 21.86 ? C8 467 4000 A 1 HETATM 4 N N2 467 . . . B 2 11.195 14.521 2.501 1 23.47 ? N2 467 4000 A 1 HETATM 5 C C9 467 . . . B 2 12.14 13.585 2.972 1 22.16 ? C9 467 4000 A 1 HETATM 6 N N3 467 . . . B 2 13.111 13.873 3.884 1 23.8 ? N3 467 4000 A 1 HETATM 7 C C6 467 . . . B 2 13.167 15.159 4.4 1 23.83 ? C6 467 4000 A 1 HETATM 8 N N1 467 . . . B 2 14.142 15.482 5.358 1 23.52 ? N1 467 4000 A 1 HETATM 9 C C1 467 . . . B 2 15.245 14.602 5.888 1 25.03 ? C1 467 4000 A 1 HETATM 10 C C2 467 . . . B 2 16.197 15.493 6.693 1 23.34 ? C2 467 4000 A 1 HETATM 11 C C3 467 . . . B 2 16.033 14.003 4.688 1 26.99 ? C3 467 4000 A 1 HETATM 12 N N 467 . . . B 2 16.236 14.861 3.629 1 27.02 ? N 467 4000 A 1 HETATM 13 C C4 467 . . . B 2 16.927 14.48 2.415 1 28.1 ? C4 467 4000 A 1 HETATM 14 C C5 467 . . . B 2 16 14.538 1.24 1 28.58 ? C5 467 4000 A 1 HETATM 15 F F2 467 . . . B 2 15.54 15.752 1.017 1 29.47 ? F2 467 4000 A 1 HETATM 16 F F1 467 . . . B 2 14.916 13.775 1.407 1 28.13 ? F1 467 4000 A 1 HETATM 17 F F 467 . . . B 2 16.599 14.145 0.131 1 28.24 ? F 467 4000 A 1 HETATM 18 O O 467 . . . B 2 16.416 12.842 4.64 1 28 ? O 467 4000 A 1 HETATM 19 C C 467 . . . B 2 14.654 13.529 6.808 1 25.17 ? C 467 4000 A 1 HETATM 20 C C10 467 . . . B 2 12.053 12.209 2.517 1 17.93 ? C10 467 4000 A 1 HETATM 21 C C13 467 . . . B 2 12.922 11.091 2.821 1 17.25 ? C13 467 4000 A 1 HETATM 22 C C14 467 . . . B 2 14.152 10.87 3.545 1 16.86 ? C14 467 4000 A 1 HETATM 23 C C15 467 . . . B 2 14.681 9.59 3.529 1 21.82 ? C15 467 4000 A 1 HETATM 24 CL CL 467 . . . B 2 16.107 9.248 4.388 1 26.73 ? CL 467 4000 A 1 HETATM 25 C C16 467 . . . B 2 14.055 8.497 2.838 1 19.16 ? C16 467 4000 A 1 HETATM 26 N N5 467 . . . B 2 12.899 8.667 2.15 1 20.21 ? N5 467 4000 A 1 HETATM 27 C C12 467 . . . B 2 12.37 9.951 2.142 1 18.08 ? C12 467 4000 A 1 HETATM 28 N N4 467 . . . B 2 11.23 10.37 1.421 1 18.18 ? N4 467 4000 A 1 HETATM 29 C C11 467 . . . B 2 11.045 11.736 1.664 1 18.55 ? C11 467 4000 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #