data_4YTM
#
_model_server_result.job_id            IbiUy1ohBGPsNmHnSN5ryA 
_model_server_result.datetime_utc      '2024-11-28 12:04:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ytm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":202}' 
#
_entry.id    4YTM 
#
_exptl.entry_id    4YTM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              341.326 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-biphenyl-3-yl-2-(trifluoromethyl)benzamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YTM 
_cell.length_a            123.654 
_cell.length_b            126.426 
_cell.length_c            220.873 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YTM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P 1 1 
E,F,G,H,Q,R,S,T,U,V,W 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 O N N 
? 11 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? 
metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
metalc ? metalc5 B SG CYS 182 B CYS 182 1_555 L FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc6 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? 
metalc ? metalc7 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc8 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc9 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? 
metalc ? metalc10 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? 
metalc ? metalc11 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc12 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc13 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc14 F SG CYS 89 F CYS 89 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc15 F SG CYS 94 F CYS 94 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc16 F SG CYS 97 F CYS 97 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc17 F SG CYS 109 F CYS 109 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc18 F SG CYS 182 F CYS 182 1_555 T FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc19 F SG CYS 185 F CYS 185 1_555 T FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? 
metalc ? metalc20 F SG CYS 188 F CYS 188 1_555 T FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? 
metalc ? metalc21 F SG CYS 192 F CYS 192 1_555 U FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
metalc ? metalc22 F SG CYS 239 F CYS 239 1_555 U FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc23 F SG CYS 245 F CYS 245 1_555 U FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc24 F SG CYS 249 F CYS 249 1_555 T FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc25 G NE2 HIS 131 G HIS 131 1_555 V FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? 
metalc ? metalc26 V FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
#
_chem_comp.formula           'C20 H14 F3 N O' 
_chem_comp.formula_weight    341.326 
_chem_comp.id                F6A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-biphenyl-3-yl-2-(trifluoromethyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N C8 F6A sing 208 n n 
N C9 F6A sing 209 n n 
O C8 F6A doub 210 n n 
C1 F1 F6A sing 211 n n 
C1 C2 F6A sing 212 n n 
C1 F2 F6A sing 213 n n 
C1 F3 F6A sing 214 n n 
C2 C3 F6A doub 215 n y 
C2 C7 F6A sing 216 n y 
C3 C4 F6A sing 217 n y 
C3 C8 F6A sing 218 n n 
C4 C5 F6A doub 219 n y 
C5 C6 F6A sing 220 n y 
C6 C7 F6A doub 221 n y 
C9 C10 F6A doub 222 n y 
C9 C14 F6A sing 223 n y 
C10 C11 F6A sing 224 n y 
C11 C12 F6A doub 225 n y 
C11 C15 F6A sing 226 n y 
C12 C13 F6A sing 227 n y 
C13 C14 F6A doub 228 n y 
C15 C16 F6A doub 229 n y 
C15 C20 F6A sing 230 n y 
C16 C17 F6A sing 231 n y 
C17 C18 F6A doub 232 n y 
C18 C19 F6A sing 233 n y 
C19 C20 F6A doub 234 n y 
N HN F6A sing 235 n n 
C4 H4 F6A sing 236 n n 
C5 H5 F6A sing 237 n n 
C6 H6 F6A sing 238 n n 
C7 H7 F6A sing 239 n n 
C10 H10 F6A sing 240 n n 
C12 H12 F6A sing 241 n n 
C13 H13 F6A sing 242 n n 
C14 H14 F6A sing 243 n n 
C16 H16 F6A sing 244 n n 
C17 H17 F6A sing 245 n n 
C18 H18 F6A sing 246 n n 
C19 H19 F6A sing 247 n n 
C20 H20 F6A sing 248 n n 
#
_atom_sites.entry_id                     4YTM 
_atom_sites.fract_transf_matrix[1][1]    0.008087 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00791 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004527 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 MLI A 1 701 701 MLI MLI . 
J 6 FAD A 1 702 702 FAD FAD . 
K 7 FES B 1 301 301 FES FES . 
L 8 SF4 B 1 302 302 SF4 SF4 . 
M 9 F3S B 1 303 303 F3S F3S . 
N 10 HEM C 1 201 201 HEM HEM . 
O 11 F6A C 1 202 202 F6A F6A . 
P 12 EPH D 1 201 201 EPH EPH . 
Q 5 MLI E 1 701 701 MLI MLI . 
R 6 FAD E 1 702 702 FAD FAD . 
S 7 FES F 1 301 301 FES FES . 
T 8 SF4 F 1 302 302 SF4 SF4 . 
U 9 F3S F 1 303 303 F3S F3S . 
V 10 HEM G 1 201 201 HEM HEM . 
W 11 F6A G 1 202 202 F6A F6A . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N F6A . . . O 11 30.607 -42.518 -46.488 1 97.15 ? N F6A 202 C 1 
HETATM 2 O O F6A . . . O 11 29.829 -41.742 -48.437 1 92.62 ? O F6A 202 C 1 
HETATM 3 C C1 F6A . . . O 11 28.576 -43.67 -50.19 1 97.46 ? C1 F6A 202 C 1 
HETATM 4 F F1 F6A . . . O 11 27.904 -43.011 -49.262 1 97.15 ? F1 F6A 202 C 1 
HETATM 5 C C2 F6A . . . O 11 29.689 -44.485 -49.573 1 95.3 ? C2 F6A 202 C 1 
HETATM 6 F F2 F6A . . . O 11 29.09 -42.796 -51.038 1 100.51 ? F2 F6A 202 C 1 
HETATM 7 C C3 F6A . . . O 11 30.504 -44.001 -48.413 1 95.81 ? C3 F6A 202 C 1 
HETATM 8 F F3 F6A . . . O 11 27.73 -44.459 -50.829 1 95.4 ? F3 F6A 202 C 1 
HETATM 9 C C4 F6A . . . O 11 31.512 -44.824 -47.906 1 95.79 ? C4 F6A 202 C 1 
HETATM 10 C C5 F6A . . . O 11 31.754 -46.075 -48.469 1 97.03 ? C5 F6A 202 C 1 
HETATM 11 C C6 F6A . . . O 11 30.998 -46.531 -49.546 1 96.6 ? C6 F6A 202 C 1 
HETATM 12 C C7 F6A . . . O 11 29.979 -45.746 -50.092 1 92.26 ? C7 F6A 202 C 1 
HETATM 13 C C8 F6A . . . O 11 30.285 -42.66 -47.772 1 96.45 ? C8 F6A 202 C 1 
HETATM 14 C C9 F6A . . . O 11 30.464 -41.302 -45.817 1 98.08 ? C9 F6A 202 C 1 
HETATM 15 C C10 F6A . . . O 11 29.846 -41.316 -44.589 1 98.45 ? C10 F6A 202 C 1 
HETATM 16 C C11 F6A . . . O 11 29.698 -40.126 -43.888 1 108.64 ? C11 F6A 202 C 1 
HETATM 17 C C12 F6A . . . O 11 30.189 -38.927 -44.424 1 100.32 ? C12 F6A 202 C 1 
HETATM 18 C C13 F6A . . . O 11 30.817 -38.908 -45.66 1 97.59 ? C13 F6A 202 C 1 
HETATM 19 C C14 F6A . . . O 11 30.958 -40.103 -46.353 1 100.08 ? C14 F6A 202 C 1 
HETATM 20 C C15 F6A . . . O 11 29.021 -40.167 -42.553 1 131.13 ? C15 F6A 202 C 1 
HETATM 21 C C16 F6A . . . O 11 29.449 -39.329 -41.519 1 138.27 ? C16 F6A 202 C 1 
HETATM 22 C C17 F6A . . . O 11 28.824 -39.368 -40.272 1 138.77 ? C17 F6A 202 C 1 
HETATM 23 C C18 F6A . . . O 11 27.766 -40.244 -40.039 1 138.43 ? C18 F6A 202 C 1 
HETATM 24 C C19 F6A . . . O 11 27.336 -41.09 -41.056 1 137.47 ? C19 F6A 202 C 1 
HETATM 25 C C20 F6A . . . O 11 27.96 -41.051 -42.306 1 138.03 ? C20 F6A 202 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           25 
#