data_4YTM # _model_server_result.job_id 7crv-lHPOIbPdnqfkJWrew _model_server_result.datetime_utc '2024-11-24 18:46:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ytm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":202}' # _entry.id 4YTM # _exptl.entry_id 4YTM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 341.326 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-biphenyl-3-yl-2-(trifluoromethyl)benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YTM _cell.length_a 123.654 _cell.length_b 126.426 _cell.length_c 220.873 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YTM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P 1 1 E,F,G,H,Q,R,S,T,U,V,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 O N N ? 11 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 89 B CYS 89 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.2 ? metalc ? metalc2 B SG CYS 94 B CYS 94 1_555 K FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 B SG CYS 97 B CYS 97 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc4 B SG CYS 109 B CYS 109 1_555 K FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc5 B SG CYS 182 B CYS 182 1_555 L FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc6 B SG CYS 185 B CYS 185 1_555 L FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc7 B SG CYS 188 B CYS 188 1_555 L FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc8 B SG CYS 192 B CYS 192 1_555 M FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? metalc ? metalc9 B SG CYS 239 B CYS 239 1_555 M FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc10 B SG CYS 245 B CYS 245 1_555 M FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.242 ? metalc ? metalc11 B SG CYS 249 B CYS 249 1_555 L FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc12 C NE2 HIS 131 C HIS 131 1_555 N FE HEM . C HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc13 N FE HEM . C HEM 201 1_555 D NE2 HIS 95 D HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc14 F SG CYS 89 F CYS 89 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc15 F SG CYS 94 F CYS 94 1_555 S FE2 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? metalc ? metalc16 F SG CYS 97 F CYS 97 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc17 F SG CYS 109 F CYS 109 1_555 S FE1 FES . F FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc18 F SG CYS 182 F CYS 182 1_555 T FE3 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc19 F SG CYS 185 F CYS 185 1_555 T FE1 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc20 F SG CYS 188 F CYS 188 1_555 T FE2 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc21 F SG CYS 192 F CYS 192 1_555 U FE4 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc22 F SG CYS 239 F CYS 239 1_555 U FE1 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc23 F SG CYS 245 F CYS 245 1_555 U FE3 F3S . F F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc24 F SG CYS 249 F CYS 249 1_555 T FE4 SF4 . F SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc25 G NE2 HIS 131 G HIS 131 1_555 V FE HEM . G HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc26 V FE HEM . G HEM 201 1_555 H NE2 HIS 95 H HIS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'C20 H14 F3 N O' _chem_comp.formula_weight 341.326 _chem_comp.id F6A _chem_comp.mon_nstd_flag . _chem_comp.name N-biphenyl-3-yl-2-(trifluoromethyl)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C8 F6A sing 208 n n N C9 F6A sing 209 n n O C8 F6A doub 210 n n C1 F1 F6A sing 211 n n C1 C2 F6A sing 212 n n C1 F2 F6A sing 213 n n C1 F3 F6A sing 214 n n C2 C3 F6A doub 215 n y C2 C7 F6A sing 216 n y C3 C4 F6A sing 217 n y C3 C8 F6A sing 218 n n C4 C5 F6A doub 219 n y C5 C6 F6A sing 220 n y C6 C7 F6A doub 221 n y C9 C10 F6A doub 222 n y C9 C14 F6A sing 223 n y C10 C11 F6A sing 224 n y C11 C12 F6A doub 225 n y C11 C15 F6A sing 226 n y C12 C13 F6A sing 227 n y C13 C14 F6A doub 228 n y C15 C16 F6A doub 229 n y C15 C20 F6A sing 230 n y C16 C17 F6A sing 231 n y C17 C18 F6A doub 232 n y C18 C19 F6A sing 233 n y C19 C20 F6A doub 234 n y N HN F6A sing 235 n n C4 H4 F6A sing 236 n n C5 H5 F6A sing 237 n n C6 H6 F6A sing 238 n n C7 H7 F6A sing 239 n n C10 H10 F6A sing 240 n n C12 H12 F6A sing 241 n n C13 H13 F6A sing 242 n n C14 H14 F6A sing 243 n n C16 H16 F6A sing 244 n n C17 H17 F6A sing 245 n n C18 H18 F6A sing 246 n n C19 H19 F6A sing 247 n n C20 H20 F6A sing 248 n n # _atom_sites.entry_id 4YTM _atom_sites.fract_transf_matrix[1][1] 0.008087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004527 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 MLI A 1 701 701 MLI MLI . J 6 FAD A 1 702 702 FAD FAD . K 7 FES B 1 301 301 FES FES . L 8 SF4 B 1 302 302 SF4 SF4 . M 9 F3S B 1 303 303 F3S F3S . N 10 HEM C 1 201 201 HEM HEM . O 11 F6A C 1 202 202 F6A F6A . P 12 EPH D 1 201 201 EPH EPH . Q 5 MLI E 1 701 701 MLI MLI . R 6 FAD E 1 702 702 FAD FAD . S 7 FES F 1 301 301 FES FES . T 8 SF4 F 1 302 302 SF4 SF4 . U 9 F3S F 1 303 303 F3S F3S . V 10 HEM G 1 201 201 HEM HEM . W 11 F6A G 1 202 202 F6A F6A . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N F6A . . . W 11 -59.951 -47.323 -91.013 1 81.04 ? N F6A 202 G 1 HETATM 2 O O F6A . . . W 11 -59.547 -45.957 -89.256 1 72.78 ? O F6A 202 G 1 HETATM 3 C C1 F6A . . . W 11 -58.624 -47.504 -86.962 1 71.23 ? C1 F6A 202 G 1 HETATM 4 F F1 F6A . . . W 11 -59.039 -46.253 -86.995 1 72.41 ? F1 F6A 202 G 1 HETATM 5 C C2 F6A . . . W 11 -59.713 -48.389 -87.488 1 72.11 ? C2 F6A 202 G 1 HETATM 6 F F2 F6A . . . W 11 -58.317 -47.848 -85.729 1 75.51 ? F2 F6A 202 G 1 HETATM 7 C C3 F6A . . . W 11 -60.311 -48.164 -88.828 1 74.78 ? C3 F6A 202 G 1 HETATM 8 F F3 F6A . . . W 11 -57.543 -47.625 -87.705 1 67.67 ? F3 F6A 202 G 1 HETATM 9 C C4 F6A . . . W 11 -61.324 -49.007 -89.29 1 73.7 ? C4 F6A 202 G 1 HETATM 10 C C5 F6A . . . W 11 -61.76 -50.058 -88.5 1 77.16 ? C5 F6A 202 G 1 HETATM 11 C C6 F6A . . . W 11 -61.199 -50.281 -87.241 1 80.28 ? C6 F6A 202 G 1 HETATM 12 C C7 F6A . . . W 11 -60.186 -49.459 -86.74 1 75.03 ? C7 F6A 202 G 1 HETATM 13 C C8 F6A . . . W 11 -59.89 -47.042 -89.719 1 78 ? C8 F6A 202 G 1 HETATM 14 C C9 F6A . . . W 11 -59.679 -46.406 -92.015 1 83.14 ? C9 F6A 202 G 1 HETATM 15 C C10 F6A . . . W 11 -59.026 -46.847 -93.141 1 84.85 ? C10 F6A 202 G 1 HETATM 16 C C11 F6A . . . W 11 -58.785 -45.947 -94.166 1 86.42 ? C11 F6A 202 G 1 HETATM 17 C C12 F6A . . . W 11 -59.229 -44.624 -94.056 1 82.45 ? C12 F6A 202 G 1 HETATM 18 C C13 F6A . . . W 11 -59.904 -44.185 -92.936 1 80.39 ? C13 F6A 202 G 1 HETATM 19 C C14 F6A . . . W 11 -60.138 -45.087 -91.914 1 83.5 ? C14 F6A 202 G 1 HETATM 20 C C15 F6A . . . W 11 -58.071 -46.415 -95.384 1 93.07 ? C15 F6A 202 G 1 HETATM 21 C C16 F6A . . . W 11 -57.071 -47.383 -95.294 1 95 ? C16 F6A 202 G 1 HETATM 22 C C17 F6A . . . W 11 -56.42 -47.812 -96.447 1 98.08 ? C17 F6A 202 G 1 HETATM 23 C C18 F6A . . . W 11 -56.764 -47.28 -97.688 1 100.02 ? C18 F6A 202 G 1 HETATM 24 C C19 F6A . . . W 11 -57.766 -46.321 -97.785 1 98.2 ? C19 F6A 202 G 1 HETATM 25 C C20 F6A . . . W 11 -58.421 -45.898 -96.635 1 96.99 ? C20 F6A 202 G 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #