data_4YTP
#
_model_server_result.job_id            FT9of-wAv5Iv11ixgX-gUQ 
_model_server_result.datetime_utc      '2024-11-24 18:28:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4ytp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":302}' 
#
_entry.id    4YTP 
#
_exptl.entry_id    4YTP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.363 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(4-tert-butylbenzyl)-2-(trifluoromethyl)benzamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YTP 
_cell.length_a            71.429 
_cell.length_b            84.008 
_cell.length_c            294.817 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YTP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             J 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 93 B CYS 65 1_555 F FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? 
metalc ? metalc2 B SG CYS 98 B CYS 70 1_555 F FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc3 B SG CYS 101 B CYS 73 1_555 F FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? 
metalc ? metalc4 B SG CYS 113 B CYS 85 1_555 F FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? 
metalc ? metalc5 B SG CYS 186 B CYS 158 1_555 G FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? 
metalc ? metalc6 B SG CYS 189 B CYS 161 1_555 G FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? 
metalc ? metalc7 B SG CYS 192 B CYS 164 1_555 G FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? 
metalc ? metalc8 B SG CYS 196 B CYS 168 1_555 H FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? 
metalc ? metalc9 B SG CYS 243 B CYS 215 1_555 H FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? 
metalc ? metalc10 B SG CYS 249 B CYS 221 1_555 H FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc11 B SG CYS 253 B CYS 225 1_555 G FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? 
metalc ? metalc12 C NE2 HIS 127 C HIS 101 1_555 I FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? 
metalc ? metalc13 I FE HEM . C HEM 301 1_555 D NE2 HIS 102 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? 
#
_chem_comp.formula           'C19 H20 F3 N O' 
_chem_comp.formula_weight    335.363 
_chem_comp.id                E23 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(4-tert-butylbenzyl)-2-(trifluoromethyl)benzamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FAG CAX E23 sing 83 n n 
FAE CAX E23 sing 84 n n 
CAX CAV E23 sing 85 n n 
CAX FAF E23 sing 86 n n 
CAM CAI E23 doub 87 n y 
CAM CAV E23 sing 88 n y 
CAI CAH E23 sing 89 n y 
CAV CAU E23 doub 90 n y 
CAH CAJ E23 doub 91 n y 
CAU CAJ E23 sing 92 n y 
CAU CAR E23 sing 93 n n 
OAD CAR E23 doub 94 n n 
CAR NAQ E23 sing 95 n n 
NAQ CAP E23 sing 96 n n 
CAP CAS E23 sing 97 n n 
CAL CAS E23 doub 98 n y 
CAL CAO E23 sing 99 n y 
CAS CAK E23 sing 100 n y 
CAO CAT E23 doub 101 n y 
CAK CAN E23 doub 102 n y 
CAC CAW E23 sing 103 n n 
CAT CAN E23 sing 104 n y 
CAT CAW E23 sing 105 n n 
CAW CAA E23 sing 106 n n 
CAW CAB E23 sing 107 n n 
CAJ H1 E23 sing 108 n n 
CAH H2 E23 sing 109 n n 
CAI H3 E23 sing 110 n n 
CAM H4 E23 sing 111 n n 
NAQ H5 E23 sing 112 n n 
CAP H6 E23 sing 113 n n 
CAP H7 E23 sing 114 n n 
CAL H8 E23 sing 115 n n 
CAO H9 E23 sing 116 n n 
CAA H10 E23 sing 117 n n 
CAA H11 E23 sing 118 n n 
CAA H12 E23 sing 119 n n 
CAC H13 E23 sing 120 n n 
CAC H14 E23 sing 121 n n 
CAC H15 E23 sing 122 n n 
CAB H16 E23 sing 123 n n 
CAB H17 E23 sing 124 n n 
CAB H18 E23 sing 125 n n 
CAN H19 E23 sing 126 n n 
CAK H20 E23 sing 127 n n 
#
_atom_sites.entry_id                     4YTP 
_atom_sites.fract_transf_matrix[1][1]    0.014 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003392 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 FAD A 1 701 702 FAD FAD . 
F 6 FES B 1 301 302 FES FES . 
G 7 SF4 B 1 302 303 SF4 SF4 . 
H 8 F3S B 1 303 304 F3S F3S . 
I 9 HEM C 1 301 301 HEM HEM . 
J 10 E23 C 1 302 302 E23 n23 . 
K 11 HOH A 1 801 9 HOH HOH . 
K 11 HOH A 2 802 12 HOH HOH . 
K 11 HOH A 3 803 6 HOH HOH . 
K 11 HOH A 4 804 19 HOH HOH . 
K 11 HOH A 5 805 10 HOH HOH . 
K 11 HOH A 6 806 7 HOH HOH . 
K 11 HOH A 7 807 15 HOH HOH . 
K 11 HOH A 8 808 1 HOH HOH . 
K 11 HOH A 9 809 11 HOH HOH . 
L 11 HOH B 1 401 18 HOH HOH . 
L 11 HOH B 2 402 17 HOH HOH . 
L 11 HOH B 3 403 22 HOH HOH . 
L 11 HOH B 4 404 14 HOH HOH . 
L 11 HOH B 5 405 16 HOH HOH . 
L 11 HOH B 6 406 21 HOH HOH . 
M 11 HOH C 1 401 13 HOH HOH . 
M 11 HOH C 2 402 8 HOH HOH . 
M 11 HOH C 3 403 2 HOH HOH . 
M 11 HOH C 4 404 4 HOH HOH . 
M 11 HOH C 5 405 20 HOH HOH . 
N 11 HOH D 1 201 5 HOH HOH . 
N 11 HOH D 2 202 3 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OAD E23 . . . J 10 -20.861 -26.94 61.068 1 55.79 ? OAD E23 302 C 1 
HETATM 2 C CAR E23 . . . J 10 -21.423 -25.861 61.028 1 56.9 ? CAR E23 302 C 1 
HETATM 3 C CAU E23 . . . J 10 -22.924 -25.757 61.099 1 59.6 ? CAU E23 302 C 1 
HETATM 4 C CAJ E23 . . . J 10 -23.449 -24.867 62.034 1 59.98 ? CAJ E23 302 C 1 
HETATM 5 C CAH E23 . . . J 10 -24.822 -24.705 62.168 1 59.97 ? CAH E23 302 C 1 
HETATM 6 C CAI E23 . . . J 10 -25.687 -25.435 61.367 1 60.02 ? CAI E23 302 C 1 
HETATM 7 C CAM E23 . . . J 10 -25.177 -26.322 60.43 1 59.8 ? CAM E23 302 C 1 
HETATM 8 C CAV E23 . . . J 10 -23.798 -26.49 60.277 1 60.27 ? CAV E23 302 C 1 
HETATM 9 C CAX E23 . . . J 10 -23.317 -27.471 59.235 1 60.65 ? CAX E23 302 C 1 
HETATM 10 F FAG E23 . . . J 10 -23.191 -28.653 59.814 1 61.74 ? FAG E23 302 C 1 
HETATM 11 F FAF E23 . . . J 10 -22.165 -27.078 58.725 1 58.73 ? FAF E23 302 C 1 
HETATM 12 F FAE E23 . . . J 10 -24.172 -27.555 58.228 1 61.22 ? FAE E23 302 C 1 
HETATM 13 N NAQ E23 . . . J 10 -20.734 -24.741 60.935 1 58.24 ? NAQ E23 302 C 1 
HETATM 14 C CAP E23 . . . J 10 -19.298 -24.586 60.841 1 61.25 ? CAP E23 302 C 1 
HETATM 15 C CAS E23 . . . J 10 -18.661 -24.421 62.203 1 64.05 ? CAS E23 302 C 1 
HETATM 16 C CAL E23 . . . J 10 -17.796 -23.35 62.413 1 64.94 ? CAL E23 302 C 1 
HETATM 17 C CAO E23 . . . J 10 -17.183 -23.183 63.65 1 66.17 ? CAO E23 302 C 1 
HETATM 18 C CAT E23 . . . J 10 -17.424 -24.084 64.696 1 67.08 ? CAT E23 302 C 1 
HETATM 19 C CAW E23 . . . J 10 -16.775 -23.934 66.053 1 68.83 ? CAW E23 302 C 1 
HETATM 20 C CAA E23 . . . J 10 -15.904 -25.171 66.293 1 68.22 ? CAA E23 302 C 1 
HETATM 21 C CAC E23 . . . J 10 -17.87 -23.858 67.117 1 70.7 ? CAC E23 302 C 1 
HETATM 22 C CAB E23 . . . J 10 -15.903 -22.678 66.144 1 68.65 ? CAB E23 302 C 1 
HETATM 23 C CAN E23 . . . J 10 -18.289 -25.161 64.476 1 65.93 ? CAN E23 302 C 1 
HETATM 24 C CAK E23 . . . J 10 -18.905 -25.327 63.238 1 65.78 ? CAK E23 302 C 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          19 
_model_server_stats.element_count           24 
#