data_4YTP # _model_server_result.job_id j7cLoskQg7C5RNEXida1ug _model_server_result.datetime_utc '2024-11-24 18:37:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ytp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":701}' # _entry.id 4YTP # _exptl.entry_id 4YTP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YTP _cell.length_a 71.429 _cell.length_b 84.008 _cell.length_c 294.817 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YTP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 93 B CYS 65 1_555 F FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc2 B SG CYS 98 B CYS 70 1_555 F FE2 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc3 B SG CYS 101 B CYS 73 1_555 F FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 B SG CYS 113 B CYS 85 1_555 F FE1 FES . B FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc5 B SG CYS 186 B CYS 158 1_555 G FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc6 B SG CYS 189 B CYS 161 1_555 G FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc7 B SG CYS 192 B CYS 164 1_555 G FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc8 B SG CYS 196 B CYS 168 1_555 H FE3 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.829 ? metalc ? metalc9 B SG CYS 243 B CYS 215 1_555 H FE1 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.497 ? metalc ? metalc10 B SG CYS 249 B CYS 221 1_555 H FE4 F3S . B F3S 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc11 B SG CYS 253 B CYS 225 1_555 G FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.453 ? metalc ? metalc12 C NE2 HIS 127 C HIS 101 1_555 I FE HEM . C HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc13 I FE HEM . C HEM 301 1_555 D NE2 HIS 102 D HIS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 137 n n PA O2A FAD sing 138 n n PA O5B FAD sing 139 n n PA O3P FAD sing 140 n n O2A HOA2 FAD sing 141 n n O5B C5B FAD sing 142 n n C5B C4B FAD sing 143 n n C5B H51A FAD sing 144 n n C5B H52A FAD sing 145 n n C4B O4B FAD sing 146 n n C4B C3B FAD sing 147 n n C4B H4B FAD sing 148 n n O4B C1B FAD sing 149 n n C3B O3B FAD sing 150 n n C3B C2B FAD sing 151 n n C3B H3B FAD sing 152 n n O3B HO3A FAD sing 153 n n C2B O2B FAD sing 154 n n C2B C1B FAD sing 155 n n C2B H2B FAD sing 156 n n O2B HO2A FAD sing 157 n n C1B N9A FAD sing 158 n n C1B H1B FAD sing 159 n n N9A C8A FAD sing 160 n y N9A C4A FAD sing 161 n y C8A N7A FAD doub 162 n y C8A H8A FAD sing 163 n n N7A C5A FAD sing 164 n y C5A C6A FAD sing 165 n y C5A C4A FAD doub 166 n y C6A N6A FAD sing 167 n n C6A N1A FAD doub 168 n y N6A H61A FAD sing 169 n n N6A H62A FAD sing 170 n n N1A C2A FAD sing 171 n y C2A N3A FAD doub 172 n y C2A H2A FAD sing 173 n n N3A C4A FAD sing 174 n y N1 C2 FAD sing 175 n n N1 C10 FAD doub 176 n n C2 O2 FAD doub 177 n n C2 N3 FAD sing 178 n n N3 C4 FAD sing 179 n n N3 HN3 FAD sing 180 n n C4 O4 FAD doub 181 n n C4 C4X FAD sing 182 n n C4X N5 FAD doub 183 n n C4X C10 FAD sing 184 n n N5 C5X FAD sing 185 n n C5X C6 FAD doub 186 n y C5X C9A FAD sing 187 n y C6 C7 FAD sing 188 n y C6 H6 FAD sing 189 n n C7 C7M FAD sing 190 n n C7 C8 FAD doub 191 n y C7M HM71 FAD sing 192 n n C7M HM72 FAD sing 193 n n C7M HM73 FAD sing 194 n n C8 C8M FAD sing 195 n n C8 C9 FAD sing 196 n y C8M HM81 FAD sing 197 n n C8M HM82 FAD sing 198 n n C8M HM83 FAD sing 199 n n C9 C9A FAD doub 200 n y C9 H9 FAD sing 201 n n C9A N10 FAD sing 202 n n N10 C10 FAD sing 203 n n N10 C1' FAD sing 204 n n C1' C2' FAD sing 205 n n C1' "H1'1" FAD sing 206 n n C1' "H1'2" FAD sing 207 n n C2' O2' FAD sing 208 n n C2' C3' FAD sing 209 n n C2' H2' FAD sing 210 n n O2' HO2' FAD sing 211 n n C3' O3' FAD sing 212 n n C3' C4' FAD sing 213 n n C3' H3' FAD sing 214 n n O3' HO3' FAD sing 215 n n C4' O4' FAD sing 216 n n C4' C5' FAD sing 217 n n C4' H4' FAD sing 218 n n O4' HO4' FAD sing 219 n n C5' O5' FAD sing 220 n n C5' "H5'1" FAD sing 221 n n C5' "H5'2" FAD sing 222 n n O5' P FAD sing 223 n n P O1P FAD doub 224 n n P O2P FAD sing 225 n n P O3P FAD sing 226 n n O2P HOP2 FAD sing 227 n n # _atom_sites.entry_id 4YTP _atom_sites.fract_transf_matrix[1][1] 0.014 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011904 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003392 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 FAD A 1 701 702 FAD FAD . F 6 FES B 1 301 302 FES FES . G 7 SF4 B 1 302 303 SF4 SF4 . H 8 F3S B 1 303 304 F3S F3S . I 9 HEM C 1 301 301 HEM HEM . J 10 E23 C 1 302 302 E23 n23 . K 11 HOH A 1 801 9 HOH HOH . K 11 HOH A 2 802 12 HOH HOH . K 11 HOH A 3 803 6 HOH HOH . K 11 HOH A 4 804 19 HOH HOH . K 11 HOH A 5 805 10 HOH HOH . K 11 HOH A 6 806 7 HOH HOH . K 11 HOH A 7 807 15 HOH HOH . K 11 HOH A 8 808 1 HOH HOH . K 11 HOH A 9 809 11 HOH HOH . L 11 HOH B 1 401 18 HOH HOH . L 11 HOH B 2 402 17 HOH HOH . L 11 HOH B 3 403 22 HOH HOH . L 11 HOH B 4 404 14 HOH HOH . L 11 HOH B 5 405 16 HOH HOH . L 11 HOH B 6 406 21 HOH HOH . M 11 HOH C 1 401 13 HOH HOH . M 11 HOH C 2 402 8 HOH HOH . M 11 HOH C 3 403 2 HOH HOH . M 11 HOH C 4 404 4 HOH HOH . M 11 HOH C 5 405 20 HOH HOH . N 11 HOH D 1 201 5 HOH HOH . N 11 HOH D 2 202 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . E 5 -12.983 -16.299 22.551 1 49.05 ? PA FAD 701 A 1 HETATM 2 O O1A FAD . . . E 5 -14.433 -16.139 22.902 1 50.18 ? O1A FAD 701 A 1 HETATM 3 O O2A FAD . . . E 5 -11.996 -15.261 23.02 1 48.7 ? O2A FAD 701 A 1 HETATM 4 O O5B FAD . . . E 5 -12.494 -17.73 23.118 1 53.03 ? O5B FAD 701 A 1 HETATM 5 C C5B FAD . . . E 5 -11.221 -18.284 22.787 1 54.38 ? C5B FAD 701 A 1 HETATM 6 C C4B FAD . . . E 5 -11.103 -19.734 23.256 1 55.44 ? C4B FAD 701 A 1 HETATM 7 O O4B FAD . . . E 5 -9.877 -20.309 22.776 1 58.42 ? O4B FAD 701 A 1 HETATM 8 C C3B FAD . . . E 5 -11.051 -19.885 24.766 1 56.16 ? C3B FAD 701 A 1 HETATM 9 O O3B FAD . . . E 5 -11.857 -21.004 25.147 1 56.03 ? O3B FAD 701 A 1 HETATM 10 C C2B FAD . . . E 5 -9.591 -20.138 25.093 1 56.01 ? C2B FAD 701 A 1 HETATM 11 O O2B FAD . . . E 5 -9.412 -20.94 26.262 1 54.94 ? O2B FAD 701 A 1 HETATM 12 C C1B FAD . . . E 5 -9.096 -20.857 23.85 1 56.27 ? C1B FAD 701 A 1 HETATM 13 N N9A FAD . . . E 5 -7.608 -20.739 23.682 1 53.85 ? N9A FAD 701 A 1 HETATM 14 C C8A FAD . . . E 5 -6.849 -19.63 23.541 1 52.33 ? C8A FAD 701 A 1 HETATM 15 N N7A FAD . . . E 5 -5.536 -19.961 23.42 1 50.76 ? N7A FAD 701 A 1 HETATM 16 C C5A FAD . . . E 5 -5.441 -21.3 23.489 1 50.95 ? C5A FAD 701 A 1 HETATM 17 C C6A FAD . . . E 5 -4.375 -22.334 23.444 1 51.52 ? C6A FAD 701 A 1 HETATM 18 N N6A FAD . . . E 5 -3.065 -22.025 23.296 1 51.75 ? N6A FAD 701 A 1 HETATM 19 N N1A FAD . . . E 5 -4.748 -23.633 23.55 1 50.61 ? N1A FAD 701 A 1 HETATM 20 C C2A FAD . . . E 5 -6.026 -24.018 23.702 1 48.55 ? C2A FAD 701 A 1 HETATM 21 N N3A FAD . . . E 5 -7.028 -23.135 23.757 1 49.78 ? N3A FAD 701 A 1 HETATM 22 C C4A FAD . . . E 5 -6.808 -21.8 23.661 1 51.51 ? C4A FAD 701 A 1 HETATM 23 N N1 FAD . . . E 5 -19.099 -9.105 19.652 1 75.24 ? N1 FAD 701 A 1 HETATM 24 C C2 FAD . . . E 5 -20.407 -8.937 19.337 1 76.56 ? C2 FAD 701 A 1 HETATM 25 O O2 FAD . . . E 5 -20.814 -9.449 18.261 1 73.91 ? O2 FAD 701 A 1 HETATM 26 N N3 FAD . . . E 5 -21.254 -8.261 20.151 1 76.32 ? N3 FAD 701 A 1 HETATM 27 C C4 FAD . . . E 5 -20.849 -7.708 21.306 1 73.96 ? C4 FAD 701 A 1 HETATM 28 O O4 FAD . . . E 5 -21.65 -7.085 22.044 1 75.64 ? O4 FAD 701 A 1 HETATM 29 C C4X FAD . . . E 5 -19.426 -7.846 21.692 1 69.37 ? C4X FAD 701 A 1 HETATM 30 N N5 FAD . . . E 5 -18.936 -7.327 22.83 1 70.69 ? N5 FAD 701 A 1 HETATM 31 C C5X FAD . . . E 5 -17.637 -7.479 23.165 1 65.37 ? C5X FAD 701 A 1 HETATM 32 C C6 FAD . . . E 5 -17.19 -6.925 24.353 1 65.43 ? C6 FAD 701 A 1 HETATM 33 C C7 FAD . . . E 5 -15.86 -7.063 24.728 1 65.83 ? C7 FAD 701 A 1 HETATM 34 C C7M FAD . . . E 5 -15.371 -6.453 26.021 1 66.75 ? C7M FAD 701 A 1 HETATM 35 C C8 FAD . . . E 5 -14.936 -7.806 23.835 1 61.24 ? C8 FAD 701 A 1 HETATM 36 C C8M FAD . . . E 5 -13.515 -7.942 24.215 1 59.74 ? C8M FAD 701 A 1 HETATM 37 C C9 FAD . . . E 5 -15.367 -8.359 22.652 1 59.24 ? C9 FAD 701 A 1 HETATM 38 C C9A FAD . . . E 5 -16.696 -8.219 22.283 1 61.55 ? C9A FAD 701 A 1 HETATM 39 N N10 FAD . . . E 5 -17.193 -8.759 21.088 1 64.19 ? N10 FAD 701 A 1 HETATM 40 C C10 FAD . . . E 5 -18.556 -8.601 20.782 1 67.89 ? C10 FAD 701 A 1 HETATM 41 C C1' FAD . . . E 5 -16.342 -9.531 20.176 1 62.94 ? C1' FAD 701 A 1 HETATM 42 C C2' FAD . . . E 5 -16.514 -10.982 20.608 1 61 ? C2' FAD 701 A 1 HETATM 43 O O2' FAD . . . E 5 -16.678 -11.09 22.034 1 60.93 ? O2' FAD 701 A 1 HETATM 44 C C3' FAD . . . E 5 -15.327 -11.836 20.218 1 58.32 ? C3' FAD 701 A 1 HETATM 45 O O3' FAD . . . E 5 -15.059 -11.616 18.84 1 59.91 ? O3' FAD 701 A 1 HETATM 46 C C4' FAD . . . E 5 -15.673 -13.292 20.512 1 55.46 ? C4' FAD 701 A 1 HETATM 47 O O4' FAD . . . E 5 -15.855 -13.409 21.932 1 55.47 ? O4' FAD 701 A 1 HETATM 48 C C5' FAD . . . E 5 -14.61 -14.274 20.024 1 51.56 ? C5' FAD 701 A 1 HETATM 49 O O5' FAD . . . E 5 -15.065 -15.601 20.262 1 48.38 ? O5' FAD 701 A 1 HETATM 50 P P FAD . . . E 5 -14.099 -16.853 19.989 1 49.24 ? P FAD 701 A 1 HETATM 51 O O1P FAD . . . E 5 -14.762 -18.129 20.467 1 47.5 ? O1P FAD 701 A 1 HETATM 52 O O2P FAD . . . E 5 -13.588 -16.775 18.556 1 46.59 ? O2P FAD 701 A 1 HETATM 53 O O3P FAD . . . E 5 -12.861 -16.483 20.959 1 49.17 ? O3P FAD 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 349 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 53 #