data_4YTZ # _model_server_result.job_id syuSwJy-hp8ikO716nDKkA _model_server_result.datetime_utc '2024-11-28 05:01:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4ytz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1406}' # _entry.id 4YTZ # _exptl.entry_id 4YTZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YTZ _cell.length_a 100.172 _cell.length_b 139.123 _cell.length_c 223.273 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YTZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 O N N ? 6 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 535 B CYS 535 1_555 B SG CYS 992 B CYS 992 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc1 A SG CYS 43 A CYS 43 1_555 D FE2 FES . A FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A SG CYS 48 A CYS 48 1_555 D FE2 FES . A FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc3 A SG CYS 51 A CYS 51 1_555 D FE1 FES . A FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc4 A SG CYS 73 A CYS 73 1_555 D FE1 FES . A FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A SG CYS 112 A CYS 112 1_555 C FE1 FES . A FES 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 A SG CYS 115 A CYS 115 1_555 C FE2 FES . A FES 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc7 A SG CYS 147 A CYS 147 1_555 C FE2 FES . A FES 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc8 A OE2 GLU 740 A GLU 740 1_555 I CA CA . A CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.897 ? metalc ? metalc9 A OH TYR 743 A TYR 743 1_555 I CA CA . A CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.944 ? metalc ? metalc10 A OG1 THR 836 A THR 836 1_555 I CA CA . A CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc11 A O GLY 837 A GLY 837 1_555 I CA CA . A CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc12 A O GLY 867 A GLY 867 1_555 H CA CA . A CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc13 A O THR 870 A THR 870 1_555 H CA CA . A CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc14 A O GLU 871 A GLU 871 1_555 H CA CA . A CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? metalc ? metalc15 A OG SER 874 A SER 874 1_555 H CA CA . A CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.713 ? metalc ? metalc16 A OG SER 907 A SER 907 1_555 H CA CA . A CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc17 A O ASN 908 A ASN 908 1_555 H CA CA . A CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc18 B SG CYS 43 B CYS 43 1_555 K FE2 FES . B FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc19 B SG CYS 48 B CYS 48 1_555 K FE2 FES . B FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc20 B SG CYS 51 B CYS 51 1_555 K FE1 FES . B FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc21 B SG CYS 73 B CYS 73 1_555 K FE1 FES . B FES 1402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc22 B SG CYS 112 B CYS 112 1_555 J FE1 FES . B FES 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc23 B SG CYS 115 B CYS 115 1_555 J FE2 FES . B FES 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc24 B SG CYS 147 B CYS 147 1_555 J FE2 FES . B FES 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc25 B OE1 GLU 740 B GLU 740 1_555 P CA CA . B CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.125 ? metalc ? metalc26 B OE2 GLU 740 B GLU 740 1_555 P CA CA . B CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.844 ? metalc ? metalc27 B OH TYR 743 B TYR 743 1_555 P CA CA . B CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc28 B OG1 THR 836 B THR 836 1_555 P CA CA . B CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc29 B O GLY 837 B GLY 837 1_555 P CA CA . B CA 1407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? metalc ? metalc30 B O GLY 867 B GLY 867 1_555 O CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc31 B O THR 870 B THR 870 1_555 O CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.687 ? metalc ? metalc32 B O GLU 871 B GLU 871 1_555 O CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.003 ? metalc ? metalc33 B OG SER 874 B SER 874 1_555 O CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.511 ? metalc ? metalc34 B OG SER 907 B SER 907 1_555 O CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc35 B O ASN 908 B ASN 908 1_555 O CA CA . B CA 1406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YTZ _atom_sites.fract_transf_matrix[1][1] 0.009983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004479 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FES A 1 1401 1 FES FES . D 2 FES A 1 1402 2 FES FES . E 3 FAD A 1 1403 4006 FAD FAD . F 4 URC A 1 1404 1 URC URC . G 5 BCT A 1 1405 1 BCT BCT . H 6 CA A 1 1406 1 CA CA . I 6 CA A 1 1407 3 CA CA . J 2 FES B 1 1401 1 FES FES . K 2 FES B 1 1402 2 FES FES . L 3 FAD B 1 1403 3006 FAD FAD . M 4 URC B 1 1404 2 URC URC . N 5 BCT B 1 1405 2 BCT BCT . O 6 CA B 1 1406 2 CA CA . P 6 CA B 1 1407 4 CA CA . Q 7 HOH A 1 1501 16 HOH HOH . Q 7 HOH A 2 1502 32 HOH HOH . Q 7 HOH A 3 1503 9 HOH HOH . Q 7 HOH A 4 1504 65 HOH HOH . Q 7 HOH A 5 1505 28 HOH HOH . Q 7 HOH A 6 1506 18 HOH HOH . Q 7 HOH A 7 1507 21 HOH HOH . Q 7 HOH A 8 1508 74 HOH HOH . Q 7 HOH A 9 1509 50 HOH HOH . Q 7 HOH A 10 1510 59 HOH HOH . Q 7 HOH A 11 1511 57 HOH HOH . Q 7 HOH A 12 1512 1 HOH HOH . Q 7 HOH A 13 1513 83 HOH HOH . Q 7 HOH A 14 1514 20 HOH HOH . Q 7 HOH A 15 1515 84 HOH HOH . Q 7 HOH A 16 1516 47 HOH HOH . Q 7 HOH A 17 1517 4 HOH HOH . Q 7 HOH A 18 1518 3 HOH HOH . Q 7 HOH A 19 1519 54 HOH HOH . Q 7 HOH A 20 1520 81 HOH HOH . Q 7 HOH A 21 1521 56 HOH HOH . Q 7 HOH A 22 1522 13 HOH HOH . Q 7 HOH A 23 1523 24 HOH HOH . Q 7 HOH A 24 1524 58 HOH HOH . Q 7 HOH A 25 1525 82 HOH HOH . Q 7 HOH A 26 1526 22 HOH HOH . Q 7 HOH A 27 1527 33 HOH HOH . Q 7 HOH A 28 1528 39 HOH HOH . Q 7 HOH A 29 1529 55 HOH HOH . Q 7 HOH A 30 1530 69 HOH HOH . Q 7 HOH A 31 1531 7 HOH HOH . Q 7 HOH A 32 1532 49 HOH HOH . Q 7 HOH A 33 1533 13 HOH HOH . Q 7 HOH A 34 1534 7 HOH HOH . Q 7 HOH A 35 1535 8 HOH HOH . Q 7 HOH A 36 1536 10 HOH HOH . Q 7 HOH A 37 1537 3 HOH HOH . Q 7 HOH A 38 1538 2 HOH HOH . Q 7 HOH A 39 1539 6 HOH HOH . Q 7 HOH A 40 1540 5 HOH HOH . R 7 HOH B 1 1501 23 HOH HOH . R 7 HOH B 2 1502 30 HOH HOH . R 7 HOH B 3 1503 21 HOH HOH . R 7 HOH B 4 1504 53 HOH HOH . R 7 HOH B 5 1505 78 HOH HOH . R 7 HOH B 6 1506 73 HOH HOH . R 7 HOH B 7 1507 14 HOH HOH . R 7 HOH B 8 1508 35 HOH HOH . R 7 HOH B 9 1509 68 HOH HOH . R 7 HOH B 10 1510 66 HOH HOH . R 7 HOH B 11 1511 51 HOH HOH . R 7 HOH B 12 1512 25 HOH HOH . R 7 HOH B 13 1513 12 HOH HOH . R 7 HOH B 14 1514 27 HOH HOH . R 7 HOH B 15 1515 79 HOH HOH . R 7 HOH B 16 1516 34 HOH HOH . R 7 HOH B 17 1517 36 HOH HOH . R 7 HOH B 18 1518 44 HOH HOH . R 7 HOH B 19 1519 60 HOH HOH . R 7 HOH B 20 1520 9 HOH HOH . R 7 HOH B 21 1521 15 HOH HOH . R 7 HOH B 22 1522 62 HOH HOH . R 7 HOH B 23 1523 17 HOH HOH . R 7 HOH B 24 1524 40 HOH HOH . R 7 HOH B 25 1525 45 HOH HOH . R 7 HOH B 26 1526 19 HOH HOH . R 7 HOH B 27 1527 43 HOH HOH . R 7 HOH B 28 1528 26 HOH HOH . R 7 HOH B 29 1529 8 HOH HOH . R 7 HOH B 30 1530 48 HOH HOH . R 7 HOH B 31 1531 71 HOH HOH . R 7 HOH B 32 1532 15 HOH HOH . R 7 HOH B 33 1533 80 HOH HOH . R 7 HOH B 34 1534 37 HOH HOH . R 7 HOH B 35 1535 2 HOH HOH . R 7 HOH B 36 1536 70 HOH HOH . R 7 HOH B 37 1537 77 HOH HOH . R 7 HOH B 38 1538 72 HOH HOH . R 7 HOH B 39 1539 67 HOH HOH . R 7 HOH B 40 1540 31 HOH HOH . R 7 HOH B 41 1541 38 HOH HOH . R 7 HOH B 42 1542 29 HOH HOH . R 7 HOH B 43 1543 52 HOH HOH . R 7 HOH B 44 1544 46 HOH HOH . R 7 HOH B 45 1545 41 HOH HOH . R 7 HOH B 46 1546 14 HOH HOH . R 7 HOH B 47 1547 61 HOH HOH . R 7 HOH B 48 1548 42 HOH HOH . R 7 HOH B 49 1549 63 HOH HOH . R 7 HOH B 50 1550 4 HOH HOH . R 7 HOH B 51 1551 64 HOH HOH . R 7 HOH B 52 1552 17 HOH HOH . R 7 HOH B 53 1553 6 HOH HOH . R 7 HOH B 54 1554 1 HOH HOH . R 7 HOH B 55 1555 12 HOH HOH . R 7 HOH B 56 1556 75 HOH HOH . R 7 HOH B 57 1557 10 HOH HOH . R 7 HOH B 58 1558 5 HOH HOH . R 7 HOH B 59 1559 76 HOH HOH . R 7 HOH B 60 1560 18 HOH HOH . R 7 HOH B 61 1561 20 HOH HOH . R 7 HOH B 62 1562 11 HOH HOH . R 7 HOH B 63 1563 16 HOH HOH . R 7 HOH B 64 1564 19 HOH HOH . R 7 HOH B 65 1565 11 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 39.421 _atom_site.Cartn_y -31.297 _atom_site.Cartn_z 19.497 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 31.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1406 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #