data_4YU8 # _model_server_result.job_id biDCFhp9zoTHjrDBGWdyqw _model_server_result.datetime_utc '2024-10-20 08:39:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yu8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4YU8 # _exptl.entry_id 4YU8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YU8 _cell.length_a 37.069 _cell.length_b 37.069 _cell.length_c 127.856 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YU8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 34 A CYS 35 1_555 A SG CYS 84 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf2 A SG CYS 48 A CYS 49 1_555 A SG CYS 98 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 58 A CYS 59 1_555 A SG CYS 117 A CYS 118 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf4 A SG CYS 62 A CYS 63 1_555 A SG CYS 119 A CYS 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 38 A ASN 39 1_555 C C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4YU8 _atom_sites.fract_transf_matrix[1][1] 0.026977 _atom_sites.fract_transf_matrix[1][2] 0.015575 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 201 1 GOL GOL . C 3 NAG A 1 202 1 NAG NAG . D 4 HOH A 1 301 2 HOH HOH . D 4 HOH A 2 302 20 HOH HOH . D 4 HOH A 3 303 52 HOH HOH . D 4 HOH A 4 304 12 HOH HOH . D 4 HOH A 5 305 4 HOH HOH . D 4 HOH A 6 306 42 HOH HOH . D 4 HOH A 7 307 27 HOH HOH . D 4 HOH A 8 308 58 HOH HOH . D 4 HOH A 9 309 24 HOH HOH . D 4 HOH A 10 310 38 HOH HOH . D 4 HOH A 11 311 37 HOH HOH . D 4 HOH A 12 312 26 HOH HOH . D 4 HOH A 13 313 31 HOH HOH . D 4 HOH A 14 314 7 HOH HOH . D 4 HOH A 15 315 3 HOH HOH . D 4 HOH A 16 316 40 HOH HOH . D 4 HOH A 17 317 15 HOH HOH . D 4 HOH A 18 318 36 HOH HOH . D 4 HOH A 19 319 23 HOH HOH . D 4 HOH A 20 320 11 HOH HOH . D 4 HOH A 21 321 44 HOH HOH . D 4 HOH A 22 322 16 HOH HOH . D 4 HOH A 23 323 57 HOH HOH . D 4 HOH A 24 324 56 HOH HOH . D 4 HOH A 25 325 25 HOH HOH . D 4 HOH A 26 326 51 HOH HOH . D 4 HOH A 27 327 46 HOH HOH . D 4 HOH A 28 328 29 HOH HOH . D 4 HOH A 29 329 28 HOH HOH . D 4 HOH A 30 330 1 HOH HOH . D 4 HOH A 31 331 5 HOH HOH . D 4 HOH A 32 332 6 HOH HOH . D 4 HOH A 33 333 9 HOH HOH . D 4 HOH A 34 334 13 HOH HOH . D 4 HOH A 35 335 14 HOH HOH . D 4 HOH A 36 336 17 HOH HOH . D 4 HOH A 37 337 19 HOH HOH . D 4 HOH A 38 338 21 HOH HOH . D 4 HOH A 39 339 22 HOH HOH . D 4 HOH A 40 340 32 HOH HOH . D 4 HOH A 41 341 34 HOH HOH . D 4 HOH A 42 342 39 HOH HOH . D 4 HOH A 43 343 41 HOH HOH . D 4 HOH A 44 344 43 HOH HOH . D 4 HOH A 45 345 48 HOH HOH . D 4 HOH A 46 346 49 HOH HOH . D 4 HOH A 47 347 50 HOH HOH . D 4 HOH A 48 348 53 HOH HOH . D 4 HOH A 49 349 54 HOH HOH . D 4 HOH A 50 350 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 17.608 -12.143 0.895 1 53.24 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . B 2 16.412 -11.459 1.298 1 50.13 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . B 2 18.4 -12.729 2.07 1 55.49 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . B 2 17.511 -13.092 3.148 1 54.34 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . B 2 19.468 -11.72 2.521 1 56.93 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . B 2 20.442 -12.343 3.373 1 59.93 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #