data_4YUS # _model_server_result.job_id V44ZltI1RP10IunJNd4Axg _model_server_result.datetime_utc '2024-12-28 23:51:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yus # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4YUS # _exptl.entry_id 4YUS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 4YUS _cell.length_a 76.838 _cell.length_b 76.838 _cell.length_c 204.778 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YUS _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4YUS _atom_sites.fract_transf_matrix[1][1] 0.013014 _atom_sites.fract_transf_matrix[1][2] 0.007514 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004883 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 401 1 FMN FMN . C 3 HOH A 1 501 30 HOH HOH . C 3 HOH A 2 502 132 HOH HOH . C 3 HOH A 3 503 11 HOH HOH . C 3 HOH A 4 504 121 HOH HOH . C 3 HOH A 5 505 97 HOH HOH . C 3 HOH A 6 506 74 HOH HOH . C 3 HOH A 7 507 27 HOH HOH . C 3 HOH A 8 508 40 HOH HOH . C 3 HOH A 9 509 38 HOH HOH . C 3 HOH A 10 510 37 HOH HOH . C 3 HOH A 11 511 71 HOH HOH . C 3 HOH A 12 512 135 HOH HOH . C 3 HOH A 13 513 48 HOH HOH . C 3 HOH A 14 514 82 HOH HOH . C 3 HOH A 15 515 89 HOH HOH . C 3 HOH A 16 516 99 HOH HOH . C 3 HOH A 17 517 136 HOH HOH . C 3 HOH A 18 518 86 HOH HOH . C 3 HOH A 19 519 93 HOH HOH . C 3 HOH A 20 520 84 HOH HOH . C 3 HOH A 21 521 7 HOH HOH . C 3 HOH A 22 522 66 HOH HOH . C 3 HOH A 23 523 146 HOH HOH . C 3 HOH A 24 524 17 HOH HOH . C 3 HOH A 25 525 55 HOH HOH . C 3 HOH A 26 526 16 HOH HOH . C 3 HOH A 27 527 61 HOH HOH . C 3 HOH A 28 528 2 HOH HOH . C 3 HOH A 29 529 1 HOH HOH . C 3 HOH A 30 530 79 HOH HOH . C 3 HOH A 31 531 5 HOH HOH . C 3 HOH A 32 532 15 HOH HOH . C 3 HOH A 33 533 111 HOH HOH . C 3 HOH A 34 534 43 HOH HOH . C 3 HOH A 35 535 3 HOH HOH . C 3 HOH A 36 536 60 HOH HOH . C 3 HOH A 37 537 134 HOH HOH . C 3 HOH A 38 538 64 HOH HOH . C 3 HOH A 39 539 69 HOH HOH . C 3 HOH A 40 540 56 HOH HOH . C 3 HOH A 41 541 26 HOH HOH . C 3 HOH A 42 542 73 HOH HOH . C 3 HOH A 43 543 85 HOH HOH . C 3 HOH A 44 544 22 HOH HOH . C 3 HOH A 45 545 80 HOH HOH . C 3 HOH A 46 546 52 HOH HOH . C 3 HOH A 47 547 23 HOH HOH . C 3 HOH A 48 548 12 HOH HOH . C 3 HOH A 49 549 47 HOH HOH . C 3 HOH A 50 550 24 HOH HOH . C 3 HOH A 51 551 8 HOH HOH . C 3 HOH A 52 552 54 HOH HOH . C 3 HOH A 53 553 110 HOH HOH . C 3 HOH A 54 554 6 HOH HOH . C 3 HOH A 55 555 25 HOH HOH . C 3 HOH A 56 556 102 HOH HOH . C 3 HOH A 57 557 113 HOH HOH . C 3 HOH A 58 558 83 HOH HOH . C 3 HOH A 59 559 128 HOH HOH . C 3 HOH A 60 560 20 HOH HOH . C 3 HOH A 61 561 138 HOH HOH . C 3 HOH A 62 562 68 HOH HOH . C 3 HOH A 63 563 4 HOH HOH . C 3 HOH A 64 564 29 HOH HOH . C 3 HOH A 65 565 96 HOH HOH . C 3 HOH A 66 566 120 HOH HOH . C 3 HOH A 67 567 106 HOH HOH . C 3 HOH A 68 568 87 HOH HOH . C 3 HOH A 69 569 126 HOH HOH . C 3 HOH A 70 570 90 HOH HOH . C 3 HOH A 71 571 14 HOH HOH . C 3 HOH A 72 572 50 HOH HOH . C 3 HOH A 73 573 103 HOH HOH . C 3 HOH A 74 574 77 HOH HOH . C 3 HOH A 75 575 18 HOH HOH . C 3 HOH A 76 576 28 HOH HOH . C 3 HOH A 77 577 45 HOH HOH . C 3 HOH A 78 578 57 HOH HOH . C 3 HOH A 79 579 19 HOH HOH . C 3 HOH A 80 580 144 HOH HOH . C 3 HOH A 81 581 117 HOH HOH . C 3 HOH A 82 582 42 HOH HOH . C 3 HOH A 83 583 147 HOH HOH . C 3 HOH A 84 584 72 HOH HOH . C 3 HOH A 85 585 33 HOH HOH . C 3 HOH A 86 586 58 HOH HOH . C 3 HOH A 87 587 34 HOH HOH . C 3 HOH A 88 588 32 HOH HOH . C 3 HOH A 89 589 62 HOH HOH . C 3 HOH A 90 590 94 HOH HOH . C 3 HOH A 91 591 108 HOH HOH . C 3 HOH A 92 592 105 HOH HOH . C 3 HOH A 93 593 59 HOH HOH . C 3 HOH A 94 594 31 HOH HOH . C 3 HOH A 95 595 10 HOH HOH . C 3 HOH A 96 596 116 HOH HOH . C 3 HOH A 97 597 53 HOH HOH . C 3 HOH A 98 598 98 HOH HOH . C 3 HOH A 99 599 9 HOH HOH . C 3 HOH A 100 600 139 HOH HOH . C 3 HOH A 101 601 44 HOH HOH . C 3 HOH A 102 602 67 HOH HOH . C 3 HOH A 103 603 36 HOH HOH . C 3 HOH A 104 604 78 HOH HOH . C 3 HOH A 105 605 123 HOH HOH . C 3 HOH A 106 606 51 HOH HOH . C 3 HOH A 107 607 107 HOH HOH . C 3 HOH A 108 608 35 HOH HOH . C 3 HOH A 109 609 13 HOH HOH . C 3 HOH A 110 610 145 HOH HOH . C 3 HOH A 111 611 124 HOH HOH . C 3 HOH A 112 612 150 HOH HOH . C 3 HOH A 113 613 131 HOH HOH . C 3 HOH A 114 614 41 HOH HOH . C 3 HOH A 115 615 76 HOH HOH . C 3 HOH A 116 616 39 HOH HOH . C 3 HOH A 117 617 91 HOH HOH . C 3 HOH A 118 618 141 HOH HOH . C 3 HOH A 119 619 109 HOH HOH . C 3 HOH A 120 620 63 HOH HOH . C 3 HOH A 121 621 21 HOH HOH . C 3 HOH A 122 622 104 HOH HOH . C 3 HOH A 123 623 127 HOH HOH . C 3 HOH A 124 624 118 HOH HOH . C 3 HOH A 125 625 142 HOH HOH . C 3 HOH A 126 626 112 HOH HOH . C 3 HOH A 127 627 65 HOH HOH . C 3 HOH A 128 628 95 HOH HOH . C 3 HOH A 129 629 122 HOH HOH . C 3 HOH A 130 630 148 HOH HOH . C 3 HOH A 131 631 119 HOH HOH . C 3 HOH A 132 632 81 HOH HOH . C 3 HOH A 133 633 46 HOH HOH . C 3 HOH A 134 634 88 HOH HOH . C 3 HOH A 135 635 70 HOH HOH . C 3 HOH A 136 636 149 HOH HOH . C 3 HOH A 137 637 133 HOH HOH . C 3 HOH A 138 638 101 HOH HOH . C 3 HOH A 139 639 125 HOH HOH . C 3 HOH A 140 640 130 HOH HOH . C 3 HOH A 141 641 140 HOH HOH . C 3 HOH A 142 642 49 HOH HOH . C 3 HOH A 143 643 143 HOH HOH . C 3 HOH A 144 644 75 HOH HOH . C 3 HOH A 145 645 114 HOH HOH . C 3 HOH A 146 646 137 HOH HOH . C 3 HOH A 147 647 129 HOH HOH . C 3 HOH A 148 648 92 HOH HOH . C 3 HOH A 149 649 100 HOH HOH . C 3 HOH A 150 650 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 -3.639 22.37 -5.045 1 49.19 ? N1 FMN 401 A 1 HETATM 2 C C2 FMN . . . B 2 -3.196 22.803 -3.809 1 46.53 ? C2 FMN 401 A 1 HETATM 3 O O2 FMN . . . B 2 -3.18 24.004 -3.553 1 46.34 ? O2 FMN 401 A 1 HETATM 4 N N3 FMN . . . B 2 -2.772 21.893 -2.863 1 45.41 ? N3 FMN 401 A 1 HETATM 5 C C4 FMN . . . B 2 -2.791 20.544 -3.152 1 46.73 ? C4 FMN 401 A 1 HETATM 6 O O4 FMN . . . B 2 -2.411 19.723 -2.314 1 42.05 ? O4 FMN 401 A 1 HETATM 7 C C4A FMN . . . B 2 -3.237 20.109 -4.399 1 44.09 ? C4A FMN 401 A 1 HETATM 8 N N5 FMN . . . B 2 -3.244 18.758 -4.671 1 44.21 ? N5 FMN 401 A 1 HETATM 9 C C5A FMN . . . B 2 -3.677 18.302 -5.897 1 42.16 ? C5A FMN 401 A 1 HETATM 10 C C6 FMN . . . B 2 -3.686 16.938 -6.156 1 38.8 ? C6 FMN 401 A 1 HETATM 11 C C7 FMN . . . B 2 -4.122 16.461 -7.387 1 43.82 ? C7 FMN 401 A 1 HETATM 12 C C7M FMN . . . B 2 -4.118 14.983 -7.637 1 34.98 ? C7M FMN 401 A 1 HETATM 13 C C8 FMN . . . B 2 -4.557 17.356 -8.362 1 40.16 ? C8 FMN 401 A 1 HETATM 14 C C8M FMN . . . B 2 -5.027 16.852 -9.698 1 38.12 ? C8M FMN 401 A 1 HETATM 15 C C9 FMN . . . B 2 -4.553 18.723 -8.094 1 40.55 ? C9 FMN 401 A 1 HETATM 16 C C9A FMN . . . B 2 -4.108 19.205 -6.862 1 42.31 ? C9A FMN 401 A 1 HETATM 17 N N10 FMN . . . B 2 -4.109 20.567 -6.594 1 44.79 ? N10 FMN 401 A 1 HETATM 18 C C10 FMN . . . B 2 -3.663 21.023 -5.359 1 45.97 ? C10 FMN 401 A 1 HETATM 19 C C1' FMN . . . B 2 -4.557 21.499 -7.69 1 39.66 ? C1' FMN 401 A 1 HETATM 20 C C2' FMN . . . B 2 -5.694 22.44 -7.37 1 44.9 ? C2' FMN 401 A 1 HETATM 21 O O2' FMN . . . B 2 -6.897 21.853 -7.798 1 44.35 ? O2' FMN 401 A 1 HETATM 22 C C3' FMN . . . B 2 -5.5 23.743 -8.14 1 53.07 ? C3' FMN 401 A 1 HETATM 23 O O3' FMN . . . B 2 -4.971 23.463 -9.423 1 51.9 ? O3' FMN 401 A 1 HETATM 24 C C4' FMN . . . B 2 -4.573 24.731 -7.431 1 54.64 ? C4' FMN 401 A 1 HETATM 25 O O4' FMN . . . B 2 -4.509 24.482 -6.041 1 50.71 ? O4' FMN 401 A 1 HETATM 26 C C5' FMN . . . B 2 -5.1 26.14 -7.666 1 56.82 ? C5' FMN 401 A 1 HETATM 27 O O5' FMN . . . B 2 -4.046 27.005 -8.006 1 64.87 ? O5' FMN 401 A 1 HETATM 28 P P FMN . . . B 2 -4.382 28.549 -8.313 1 74.82 ? P FMN 401 A 1 HETATM 29 O O1P FMN . . . B 2 -3.812 29.427 -7.223 1 71.37 ? O1P FMN 401 A 1 HETATM 30 O O2P FMN . . . B 2 -3.782 28.903 -9.655 1 67.75 ? O2P FMN 401 A 1 HETATM 31 O O3P FMN . . . B 2 -5.885 28.729 -8.333 1 61.5 ? O3P FMN 401 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #