data_4YUT # _model_server_result.job_id iTTmNH4lqWl2g5jrlbhPkA _model_server_result.datetime_utc '2025-07-19 06:42:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yut # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 4YUT # _exptl.entry_id 4YUT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YUT _cell.length_a 85.351 _cell.length_b 100.699 _cell.length_c 120.673 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YUT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 4YUT _atom_sites.fract_transf_matrix[1][1] 0.011716 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008287 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 401 1 FMN FMN . D 2 FMN B 1 401 2 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 15.367 -28.637 3.478 1 127.05 ? N1 FMN 401 B 1 HETATM 2 C C2 FMN . . . D 2 16.641 -28.166 3.661 1 127.37 ? C2 FMN 401 B 1 HETATM 3 O O2 FMN . . . D 2 17.621 -28.904 3.543 1 128.01 ? O2 FMN 401 B 1 HETATM 4 N N3 FMN . . . D 2 16.855 -26.824 3.954 1 126.84 ? N3 FMN 401 B 1 HETATM 5 C C4 FMN . . . D 2 15.874 -25.855 4.08 1 127.08 ? C4 FMN 401 B 1 HETATM 6 O O4 FMN . . . D 2 16.19 -24.693 4.325 1 127.54 ? O4 FMN 401 B 1 HETATM 7 C C4A FMN . . . D 2 14.512 -26.36 3.877 1 126.13 ? C4A FMN 401 B 1 HETATM 8 N N5 FMN . . . D 2 13.519 -25.509 3.949 1 124.69 ? N5 FMN 401 B 1 HETATM 9 C C5A FMN . . . D 2 12.233 -25.992 3.728 1 124.26 ? C5A FMN 401 B 1 HETATM 10 C C6 FMN . . . D 2 11.164 -25.093 3.767 1 122.84 ? C6 FMN 401 B 1 HETATM 11 C C7 FMN . . . D 2 9.857 -25.508 3.532 1 122.41 ? C7 FMN 401 B 1 HETATM 12 C C7M FMN . . . D 2 8.757 -24.478 3.491 1 121.47 ? C7M FMN 401 B 1 HETATM 13 C C8 FMN . . . D 2 9.6 -26.878 3.285 1 123.25 ? C8 FMN 401 B 1 HETATM 14 C C8M FMN . . . D 2 8.196 -27.41 3.15 1 123.24 ? C8M FMN 401 B 1 HETATM 15 C C9 FMN . . . D 2 10.665 -27.77 3.231 1 124.69 ? C9 FMN 401 B 1 HETATM 16 C C9A FMN . . . D 2 11.977 -27.347 3.44 1 125.8 ? C9A FMN 401 B 1 HETATM 17 N N10 FMN . . . D 2 13.085 -28.23 3.343 1 128.53 ? N10 FMN 401 B 1 HETATM 18 C C10 FMN . . . D 2 14.357 -27.78 3.574 1 127.27 ? C10 FMN 401 B 1 HETATM 19 C C1' FMN . . . D 2 12.838 -29.585 2.805 1 132.08 ? C1' FMN 401 B 1 HETATM 20 C C2' FMN . . . D 2 12.816 -30.756 3.783 1 135.54 ? C2' FMN 401 B 1 HETATM 21 O O2' FMN . . . D 2 14.155 -31.12 4.126 1 135.77 ? O2' FMN 401 B 1 HETATM 22 C C3' FMN . . . D 2 12.049 -31.925 3.158 1 138.14 ? C3' FMN 401 B 1 HETATM 23 O O3' FMN . . . D 2 10.69 -31.798 3.56 1 137.66 ? O3' FMN 401 B 1 HETATM 24 C C4' FMN . . . D 2 12.494 -33.365 3.43 1 141.2 ? C4' FMN 401 B 1 HETATM 25 O O4' FMN . . . D 2 12.791 -33.576 4.812 1 142.16 ? O4' FMN 401 B 1 HETATM 26 C C5' FMN . . . D 2 13.632 -33.821 2.542 1 142.68 ? C5' FMN 401 B 1 HETATM 27 O O5' FMN . . . D 2 13.748 -35.259 2.588 1 144.09 ? O5' FMN 401 B 1 HETATM 28 P P FMN . . . D 2 15.186 -36 2.783 1 145.1 ? P FMN 401 B 1 HETATM 29 O O1P FMN . . . D 2 15.654 -35.89 4.204 1 145.43 ? O1P FMN 401 B 1 HETATM 30 O O2P FMN . . . D 2 14.97 -37.455 2.353 1 144.96 ? O2P FMN 401 B 1 HETATM 31 O O3P FMN . . . D 2 16.165 -35.368 1.78 1 145.03 ? O3P FMN 401 B 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #