data_4YV2 # _model_server_result.job_id FI77CybAtmP04_ei2XYuYQ _model_server_result.datetime_utc '2024-11-05 06:57:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 4YV2 # _exptl.entry_id 4YV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 181.255 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-phenyl-3-sulfanylpropanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.7 _cell.angle_gamma 90 _cell.entry_id 4YV2 _cell.length_a 43.658 _cell.length_b 100.315 _cell.length_c 71.365 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # _chem_comp.formula 'C9 H11 N O S' _chem_comp.formula_weight 181.255 _chem_comp.id 4K3 _chem_comp.mon_nstd_flag . _chem_comp.name N-phenyl-3-sulfanylpropanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C10 4K3 doub 1 n y C12 C11 4K3 sing 2 n y C10 C9 4K3 sing 3 n y C11 C8 4K3 doub 4 n y C9 C6 4K3 doub 5 n y C8 C6 4K3 sing 6 n y C6 N1 4K3 sing 7 n n N1 C2 4K3 sing 8 n n O7 C2 4K3 doub 9 n n C2 C3 4K3 sing 10 n n C3 C5 4K3 sing 11 n n C5 S4 4K3 sing 12 n n C12 H1 4K3 sing 13 n n C10 H2 4K3 sing 14 n n C11 H3 4K3 sing 15 n n C9 H4 4K3 sing 16 n n C8 H5 4K3 sing 17 n n C3 H6 4K3 sing 18 n n C5 H7 4K3 sing 19 n n N1 H8 4K3 sing 20 n n S4 H9 4K3 sing 21 n n C3 H10 4K3 sing 22 n n C5 H11 4K3 sing 23 n n # _atom_sites.entry_id 4YV2 _atom_sites.fract_transf_matrix[1][1] 0.022905 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007309 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 S4M A 1 301 1 S4M S4M . D 2 S4M B 1 301 1 S4M S4M . E 3 4K3 B 1 302 1 4K3 UNL . F 3 4K3 B 1 303 1 4K3 UNL . G 4 HOH A 1 401 11 HOH HOH . G 4 HOH A 2 402 21 HOH HOH . G 4 HOH A 3 403 6 HOH HOH . G 4 HOH A 4 404 35 HOH HOH . G 4 HOH A 5 405 33 HOH HOH . G 4 HOH A 6 406 20 HOH HOH . G 4 HOH A 7 407 46 HOH HOH . G 4 HOH A 8 408 8 HOH HOH . G 4 HOH A 9 409 9 HOH HOH . G 4 HOH A 10 410 18 HOH HOH . G 4 HOH A 11 411 5 HOH HOH . G 4 HOH A 12 412 12 HOH HOH . G 4 HOH A 13 413 36 HOH HOH . G 4 HOH A 14 414 3 HOH HOH . G 4 HOH A 15 415 49 HOH HOH . G 4 HOH A 16 416 15 HOH HOH . G 4 HOH A 17 417 27 HOH HOH . G 4 HOH A 18 418 1 HOH HOH . G 4 HOH A 19 419 28 HOH HOH . G 4 HOH A 20 420 37 HOH HOH . G 4 HOH A 21 421 40 HOH HOH . G 4 HOH A 22 422 48 HOH HOH . G 4 HOH A 23 423 10 HOH HOH . G 4 HOH A 24 424 29 HOH HOH . G 4 HOH A 25 425 47 HOH HOH . G 4 HOH A 26 426 44 HOH HOH . H 4 HOH B 1 401 42 HOH HOH . H 4 HOH B 2 402 50 HOH HOH . H 4 HOH B 3 403 25 HOH HOH . H 4 HOH B 4 404 39 HOH HOH . H 4 HOH B 5 405 34 HOH HOH . H 4 HOH B 6 406 32 HOH HOH . H 4 HOH B 7 407 26 HOH HOH . H 4 HOH B 8 408 41 HOH HOH . H 4 HOH B 9 409 4 HOH HOH . H 4 HOH B 10 410 52 HOH HOH . H 4 HOH B 11 411 38 HOH HOH . H 4 HOH B 12 412 31 HOH HOH . H 4 HOH B 13 413 16 HOH HOH . H 4 HOH B 14 414 22 HOH HOH . H 4 HOH B 15 415 45 HOH HOH . H 4 HOH B 16 416 17 HOH HOH . H 4 HOH B 17 417 51 HOH HOH . H 4 HOH B 18 418 19 HOH HOH . H 4 HOH B 19 419 2 HOH HOH . H 4 HOH B 20 420 30 HOH HOH . H 4 HOH B 21 421 14 HOH HOH . H 4 HOH B 22 422 13 HOH HOH . H 4 HOH B 23 423 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 4K3 . . . F 3 7.823 13.871 16.189 1 52.16 ? C12 4K3 303 B 1 HETATM 2 C C10 4K3 . . . F 3 8.71 13.118 15.453 1 49.93 ? C10 4K3 303 B 1 HETATM 3 C C11 4K3 . . . F 3 6.46 13.758 16.037 1 47.1 ? C11 4K3 303 B 1 HETATM 4 C C9 4K3 . . . F 3 8.188 12.238 14.54 1 55.13 ? C9 4K3 303 B 1 HETATM 5 C C8 4K3 . . . F 3 5.955 12.872 15.126 1 48.68 ? C8 4K3 303 B 1 HETATM 6 C C6 4K3 . . . F 3 6.828 12.122 14.38 1 49.6 ? C6 4K3 303 B 1 HETATM 7 C C3 4K3 . . . F 3 5.627 9.155 12.725 1 41.01 ? C3 4K3 303 B 1 HETATM 8 C C5 4K3 . . . F 3 4.933 8.04 12.955 1 39.06 ? C5 4K3 303 B 1 HETATM 9 C C2 4K3 . . . F 3 5.603 10.146 13.817 1 40.75 ? C2 4K3 303 B 1 HETATM 10 N N1 4K3 . . . F 3 6.354 11.214 13.428 1 47.87 ? N1 4K3 303 B 1 HETATM 11 O O7 4K3 . . . F 3 4.968 10.025 14.859 1 38.09 ? O7 4K3 303 B 1 HETATM 12 S S4 4K3 . . . F 3 4.066 7.74 14.429 1 40.24 ? S4 4K3 303 B 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 121 _model_server_stats.create_model_time_ms 130 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #