data_4YV3 # _model_server_result.job_id TSUXfIwUfKq2vDBLA8EZFg _model_server_result.datetime_utc '2025-02-05 16:55:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 4YV3 # _exptl.entry_id 4YV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.33 _cell.angle_gamma 90 _cell.entry_id 4YV3 _cell.length_a 39.06 _cell.length_b 60.95 _cell.length_c 48.9 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 22 A ILE 182 1_555 A N MSE 23 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 23 A MSE 183 1_555 A N ARG 24 A ARG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C GLU 32 A GLU 192 1_555 A N MSE 33 A MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C MSE 33 A MSE 193 1_555 A N LEU 34 A LEU 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 A CE1 HIS 78 A HIS 238 1_555 D O2 SO4 . A SO4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale6 B C ILE 22 B ILE 182 1_555 B N MSE 23 B MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C MSE 23 B MSE 183 1_555 B N ARG 24 B ARG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 B C GLU 32 B GLU 192 1_555 B N MSE 33 B MSE 193 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C GLU 32 B GLU 192 1_555 B N MSE 33 B MSE 193 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.329 ? covale ? covale10 B C MSE 33 B MSE 193 1_555 B N LEU 34 B LEU 194 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale11 B C MSE 33 B MSE 193 1_555 B N LEU 34 B LEU 194 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 C C ILE 22 C ILE 182 1_555 C N MSE 23 C MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 C C MSE 23 C MSE 183 1_555 C N ARG 24 C ARG 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale14 C C GLU 32 C GLU 192 1_555 C N MSE 33 C MSE 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 C C MSE 33 C MSE 193 1_555 C N LEU 34 C LEU 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YV3 _atom_sites.fract_transf_matrix[1][1] 0.025602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00654 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016407 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021107 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SO4 A 1 301 1 SO4 SO4 . E 3 CL B 1 301 1 CL CL . F 4 HOH A 1 401 10 HOH HOH . F 4 HOH A 2 402 64 HOH HOH . F 4 HOH A 3 403 2 HOH HOH . F 4 HOH A 4 404 7 HOH HOH . F 4 HOH A 5 405 30 HOH HOH . F 4 HOH A 6 406 28 HOH HOH . F 4 HOH A 7 407 20 HOH HOH . F 4 HOH A 8 408 26 HOH HOH . F 4 HOH A 9 409 46 HOH HOH . F 4 HOH A 10 410 6 HOH HOH . F 4 HOH A 11 411 9 HOH HOH . F 4 HOH A 12 412 14 HOH HOH . F 4 HOH A 13 413 17 HOH HOH . F 4 HOH A 14 414 19 HOH HOH . F 4 HOH A 15 415 23 HOH HOH . F 4 HOH A 16 416 25 HOH HOH . F 4 HOH A 17 417 33 HOH HOH . F 4 HOH A 18 418 38 HOH HOH . F 4 HOH A 19 419 39 HOH HOH . F 4 HOH A 20 420 45 HOH HOH . F 4 HOH A 21 421 53 HOH HOH . F 4 HOH A 22 422 54 HOH HOH . F 4 HOH A 23 423 59 HOH HOH . F 4 HOH A 24 424 63 HOH HOH . G 4 HOH B 1 401 4 HOH HOH . G 4 HOH B 2 402 42 HOH HOH . G 4 HOH B 3 403 60 HOH HOH . G 4 HOH B 4 404 58 HOH HOH . G 4 HOH B 5 405 22 HOH HOH . G 4 HOH B 6 406 5 HOH HOH . G 4 HOH B 7 407 67 HOH HOH . G 4 HOH B 8 408 31 HOH HOH . G 4 HOH B 9 409 16 HOH HOH . G 4 HOH B 10 410 43 HOH HOH . G 4 HOH B 11 411 1 HOH HOH . G 4 HOH B 12 412 57 HOH HOH . G 4 HOH B 13 413 61 HOH HOH . G 4 HOH B 14 414 48 HOH HOH . G 4 HOH B 15 415 44 HOH HOH . G 4 HOH B 16 416 66 HOH HOH . G 4 HOH B 17 417 65 HOH HOH . G 4 HOH B 18 418 68 HOH HOH . G 4 HOH B 19 419 50 HOH HOH . G 4 HOH B 20 420 56 HOH HOH . G 4 HOH B 21 421 41 HOH HOH . G 4 HOH B 22 422 37 HOH HOH . G 4 HOH B 23 423 15 HOH HOH . G 4 HOH B 24 424 21 HOH HOH . G 4 HOH B 25 425 29 HOH HOH . G 4 HOH B 26 426 40 HOH HOH . H 4 HOH C 1 301 55 HOH HOH . H 4 HOH C 2 302 34 HOH HOH . H 4 HOH C 3 303 27 HOH HOH . H 4 HOH C 4 304 12 HOH HOH . H 4 HOH C 5 305 18 HOH HOH . H 4 HOH C 6 306 51 HOH HOH . H 4 HOH C 7 307 32 HOH HOH . H 4 HOH C 8 308 35 HOH HOH . H 4 HOH C 9 309 13 HOH HOH . H 4 HOH C 10 310 8 HOH HOH . H 4 HOH C 11 311 47 HOH HOH . H 4 HOH C 12 312 49 HOH HOH . H 4 HOH C 13 313 52 HOH HOH . H 4 HOH C 14 314 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 2 -22.33 29.27 61.105 0.91 38.99 ? S SO4 301 A 1 HETATM 2 O O1 SO4 . . . D 2 -22.717 29.939 59.842 0.91 84.76 ? O1 SO4 301 A 1 HETATM 3 O O2 SO4 . . . D 2 -20.859 29.124 61.155 0.91 77.99 ? O2 SO4 301 A 1 HETATM 4 O O3 SO4 . . . D 2 -22.785 30.086 62.253 0.91 75.04 ? O3 SO4 301 A 1 HETATM 5 O O4 SO4 . . . D 2 -22.962 27.935 61.17 0.91 64.67 ? O4 SO4 301 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #