data_4YV7 # _model_server_result.job_id yw8XD3giZCOKu5DGzroh5Q _model_server_result.datetime_utc '2024-12-26 23:56:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yv7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 4YV7 # _exptl.entry_id 4YV7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YV7 _cell.length_a 99.246 _cell.length_b 110.626 _cell.length_c 35.929 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YV7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 145 A ALA 145 1_555 A N MSE 146 A MSE 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale2 A C MSE 146 A MSE 146 1_555 A N GLY 147 A GLY 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C ALA 212 A ALA 212 1_555 A N MSE 213 A MSE 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale4 A C MSE 213 A MSE 213 1_555 A N GLN 214 A GLN 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C ASP 232 A ASP 232 1_555 A N MSE 233 A MSE 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 A C MSE 233 A MSE 233 1_555 A N ALA 234 A ALA 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C ALA 237 A ALA 237 1_555 A N MSE 238 A MSE 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale8 A C MSE 238 A MSE 238 1_555 A N GLN 239 A GLN 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C LEU 257 A LEU 257 1_555 A N MSE 258 A MSE 258 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.33 ? covale ? covale10 A C LEU 257 A LEU 257 1_555 A N MSE 258 A MSE 258 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.339 ? covale ? covale11 A C MSE 258 A MSE 258 1_555 A N GLU 259 A GLU 259 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale12 A C MSE 258 A MSE 258 1_555 A N GLU 259 A GLU 259 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 4YV7 _atom_sites.fract_transf_matrix[1][1] 0.010076 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009039 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 1 GOL GOL . C 3 HOH A 1 501 103 HOH HOH . C 3 HOH A 2 502 89 HOH HOH . C 3 HOH A 3 503 98 HOH HOH . C 3 HOH A 4 504 88 HOH HOH . C 3 HOH A 5 505 108 HOH HOH . C 3 HOH A 6 506 47 HOH HOH . C 3 HOH A 7 507 2 HOH HOH . C 3 HOH A 8 508 45 HOH HOH . C 3 HOH A 9 509 99 HOH HOH . C 3 HOH A 10 510 40 HOH HOH . C 3 HOH A 11 511 27 HOH HOH . C 3 HOH A 12 512 53 HOH HOH . C 3 HOH A 13 513 105 HOH HOH . C 3 HOH A 14 514 6 HOH HOH . C 3 HOH A 15 515 106 HOH HOH . C 3 HOH A 16 516 7 HOH HOH . C 3 HOH A 17 517 18 HOH HOH . C 3 HOH A 18 518 11 HOH HOH . C 3 HOH A 19 519 1 HOH HOH . C 3 HOH A 20 520 50 HOH HOH . C 3 HOH A 21 521 69 HOH HOH . C 3 HOH A 22 522 17 HOH HOH . C 3 HOH A 23 523 9 HOH HOH . C 3 HOH A 24 524 64 HOH HOH . C 3 HOH A 25 525 90 HOH HOH . C 3 HOH A 26 526 10 HOH HOH . C 3 HOH A 27 527 24 HOH HOH . C 3 HOH A 28 528 12 HOH HOH . C 3 HOH A 29 529 20 HOH HOH . C 3 HOH A 30 530 67 HOH HOH . C 3 HOH A 31 531 86 HOH HOH . C 3 HOH A 32 532 107 HOH HOH . C 3 HOH A 33 533 59 HOH HOH . C 3 HOH A 34 534 21 HOH HOH . C 3 HOH A 35 535 72 HOH HOH . C 3 HOH A 36 536 32 HOH HOH . C 3 HOH A 37 537 23 HOH HOH . C 3 HOH A 38 538 71 HOH HOH . C 3 HOH A 39 539 94 HOH HOH . C 3 HOH A 40 540 42 HOH HOH . C 3 HOH A 41 541 100 HOH HOH . C 3 HOH A 42 542 30 HOH HOH . C 3 HOH A 43 543 49 HOH HOH . C 3 HOH A 44 544 4 HOH HOH . C 3 HOH A 45 545 19 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 43 HOH HOH . C 3 HOH A 48 548 39 HOH HOH . C 3 HOH A 49 549 15 HOH HOH . C 3 HOH A 50 550 80 HOH HOH . C 3 HOH A 51 551 48 HOH HOH . C 3 HOH A 52 552 55 HOH HOH . C 3 HOH A 53 553 8 HOH HOH . C 3 HOH A 54 554 56 HOH HOH . C 3 HOH A 55 555 16 HOH HOH . C 3 HOH A 56 556 73 HOH HOH . C 3 HOH A 57 557 44 HOH HOH . C 3 HOH A 58 558 13 HOH HOH . C 3 HOH A 59 559 25 HOH HOH . C 3 HOH A 60 560 28 HOH HOH . C 3 HOH A 61 561 51 HOH HOH . C 3 HOH A 62 562 95 HOH HOH . C 3 HOH A 63 563 52 HOH HOH . C 3 HOH A 64 564 3 HOH HOH . C 3 HOH A 65 565 58 HOH HOH . C 3 HOH A 66 566 14 HOH HOH . C 3 HOH A 67 567 83 HOH HOH . C 3 HOH A 68 568 76 HOH HOH . C 3 HOH A 69 569 34 HOH HOH . C 3 HOH A 70 570 37 HOH HOH . C 3 HOH A 71 571 5 HOH HOH . C 3 HOH A 72 572 102 HOH HOH . C 3 HOH A 73 573 79 HOH HOH . C 3 HOH A 74 574 92 HOH HOH . C 3 HOH A 75 575 65 HOH HOH . C 3 HOH A 76 576 78 HOH HOH . C 3 HOH A 77 577 38 HOH HOH . C 3 HOH A 78 578 33 HOH HOH . C 3 HOH A 79 579 57 HOH HOH . C 3 HOH A 80 580 110 HOH HOH . C 3 HOH A 81 581 26 HOH HOH . C 3 HOH A 82 582 22 HOH HOH . C 3 HOH A 83 583 61 HOH HOH . C 3 HOH A 84 584 41 HOH HOH . C 3 HOH A 85 585 70 HOH HOH . C 3 HOH A 86 586 91 HOH HOH . C 3 HOH A 87 587 75 HOH HOH . C 3 HOH A 88 588 29 HOH HOH . C 3 HOH A 89 589 31 HOH HOH . C 3 HOH A 90 590 109 HOH HOH . C 3 HOH A 91 591 35 HOH HOH . C 3 HOH A 92 592 87 HOH HOH . C 3 HOH A 93 593 36 HOH HOH . C 3 HOH A 94 594 82 HOH HOH . C 3 HOH A 95 595 63 HOH HOH . C 3 HOH A 96 596 74 HOH HOH . C 3 HOH A 97 597 85 HOH HOH . C 3 HOH A 98 598 96 HOH HOH . C 3 HOH A 99 599 84 HOH HOH . C 3 HOH A 100 600 54 HOH HOH . C 3 HOH A 101 601 62 HOH HOH . C 3 HOH A 102 602 77 HOH HOH . C 3 HOH A 103 603 60 HOH HOH . C 3 HOH A 104 604 81 HOH HOH . C 3 HOH A 105 605 104 HOH HOH . C 3 HOH A 106 606 97 HOH HOH . C 3 HOH A 107 607 93 HOH HOH . C 3 HOH A 108 608 66 HOH HOH . C 3 HOH A 109 609 68 HOH HOH . C 3 HOH A 110 610 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 35.206 0.711 1.03 1 25.26 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 33.956 0.539 1.686 1 29.19 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 36.127 1.511 1.965 1 30.06 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 35.789 2.884 1.878 1 28.28 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 37.593 1.305 1.575 1 36.96 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 38.456 2.25 2.189 1 31.61 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #