data_4YVD
#
_model_server_result.job_id            aZcsmNjwOjB45vIqbf7axA 
_model_server_result.datetime_utc      '2024-10-12 19:30:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yvd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":609}' 
#
_entry.id    4YVD 
#
_exptl.entry_id    4YVD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              ? 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'UNKNOWN ATOM OR ION' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YVD 
_cell.length_a            158.33 
_cell.length_b            34.185 
_cell.length_c            48.818 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YVD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 34.185 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ARG 110 A ARG 250 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? 
metalc ? metalc2 A O TYR 152 A TYR 292 1_555 B NA NA . A NA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc3 B NA NA . A NA 601 1_555 T O HOH . A HOH 738 1_555 ? ? ? ? B ? ? ? ? ? ? ? 3.012 ? 
metalc ? metalc4 B NA NA . A NA 601 1_555 T O HOH . A HOH 782 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.715 ? 
metalc ? metalc5 B NA NA . A NA 601 1_555 T O HOH . A HOH 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? 
metalc ? metalc6 B NA NA . A NA 601 1_555 T O HOH . A HOH 825 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.995 ? 
#
_chem_comp.formula           ? 
_chem_comp.formula_weight    ? 
_chem_comp.id                UNX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'UNKNOWN ATOM OR ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YVD 
_atom_sites.fract_transf_matrix[1][1]    0.006316 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.029253 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020484 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA A 1 601 601 NA NA . 
C 3 CL A 1 602 602 CL CL . 
D 3 CL A 1 603 603 CL CL . 
E 3 CL A 1 604 604 CL CL . 
F 3 CL A 1 605 605 CL CL . 
G 3 CL A 1 606 606 CL CL . 
H 4 UNX A 1 607 1000 UNX UNX . 
I 4 UNX A 1 608 1001 UNX UNX . 
J 4 UNX A 1 609 1002 UNX UNX . 
K 4 UNX A 1 610 1003 UNX UNX . 
L 4 UNX A 1 611 1004 UNX UNX . 
M 4 UNX A 1 612 1005 UNX UNX . 
N 4 UNX A 1 613 1006 UNX UNX . 
O 4 UNX A 1 614 1007 UNX UNX . 
P 4 UNX A 1 615 1008 UNX UNX . 
Q 4 UNX A 1 616 1009 UNX UNX . 
R 4 UNX A 1 617 1010 UNX UNX . 
S 4 UNX A 1 618 1011 UNX UNX . 
T 5 HOH A 1 701 701 HOH HOH . 
T 5 HOH A 2 702 702 HOH HOH . 
T 5 HOH A 3 703 703 HOH HOH . 
T 5 HOH A 4 704 704 HOH HOH . 
T 5 HOH A 5 705 705 HOH HOH . 
T 5 HOH A 6 706 706 HOH HOH . 
T 5 HOH A 7 707 707 HOH HOH . 
T 5 HOH A 8 708 708 HOH HOH . 
T 5 HOH A 9 709 709 HOH HOH . 
T 5 HOH A 10 710 710 HOH HOH . 
T 5 HOH A 11 711 711 HOH HOH . 
T 5 HOH A 12 712 712 HOH HOH . 
T 5 HOH A 13 713 713 HOH HOH . 
T 5 HOH A 14 714 714 HOH HOH . 
T 5 HOH A 15 715 715 HOH HOH . 
T 5 HOH A 16 716 716 HOH HOH . 
T 5 HOH A 17 717 717 HOH HOH . 
T 5 HOH A 18 718 718 HOH HOH . 
T 5 HOH A 19 719 719 HOH HOH . 
T 5 HOH A 20 720 720 HOH HOH . 
T 5 HOH A 21 721 721 HOH HOH . 
T 5 HOH A 22 722 722 HOH HOH . 
T 5 HOH A 23 723 723 HOH HOH . 
T 5 HOH A 24 724 724 HOH HOH . 
T 5 HOH A 25 725 725 HOH HOH . 
T 5 HOH A 26 726 726 HOH HOH . 
T 5 HOH A 27 727 727 HOH HOH . 
T 5 HOH A 28 728 728 HOH HOH . 
T 5 HOH A 29 729 729 HOH HOH . 
T 5 HOH A 30 730 730 HOH HOH . 
T 5 HOH A 31 731 731 HOH HOH . 
T 5 HOH A 32 732 732 HOH HOH . 
T 5 HOH A 33 733 733 HOH HOH . 
T 5 HOH A 34 734 734 HOH HOH . 
T 5 HOH A 35 735 735 HOH HOH . 
T 5 HOH A 36 736 736 HOH HOH . 
T 5 HOH A 37 737 737 HOH HOH . 
T 5 HOH A 38 738 738 HOH HOH . 
T 5 HOH A 39 739 739 HOH HOH . 
T 5 HOH A 40 740 740 HOH HOH . 
T 5 HOH A 41 741 741 HOH HOH . 
T 5 HOH A 42 742 742 HOH HOH . 
T 5 HOH A 43 743 743 HOH HOH . 
T 5 HOH A 44 744 744 HOH HOH . 
T 5 HOH A 45 745 745 HOH HOH . 
T 5 HOH A 46 746 746 HOH HOH . 
T 5 HOH A 47 747 747 HOH HOH . 
T 5 HOH A 48 748 748 HOH HOH . 
T 5 HOH A 49 749 749 HOH HOH . 
T 5 HOH A 50 750 750 HOH HOH . 
T 5 HOH A 51 751 751 HOH HOH . 
T 5 HOH A 52 752 752 HOH HOH . 
T 5 HOH A 53 753 753 HOH HOH . 
T 5 HOH A 54 754 754 HOH HOH . 
T 5 HOH A 55 755 755 HOH HOH . 
T 5 HOH A 56 756 756 HOH HOH . 
T 5 HOH A 57 757 757 HOH HOH . 
T 5 HOH A 58 758 758 HOH HOH . 
T 5 HOH A 59 759 759 HOH HOH . 
T 5 HOH A 60 760 760 HOH HOH . 
T 5 HOH A 61 761 761 HOH HOH . 
T 5 HOH A 62 762 762 HOH HOH . 
T 5 HOH A 63 763 763 HOH HOH . 
T 5 HOH A 64 764 764 HOH HOH . 
T 5 HOH A 65 765 765 HOH HOH . 
T 5 HOH A 66 766 766 HOH HOH . 
T 5 HOH A 67 767 767 HOH HOH . 
T 5 HOH A 68 768 768 HOH HOH . 
T 5 HOH A 69 769 769 HOH HOH . 
T 5 HOH A 70 770 770 HOH HOH . 
T 5 HOH A 71 771 771 HOH HOH . 
T 5 HOH A 72 772 772 HOH HOH . 
T 5 HOH A 73 773 773 HOH HOH . 
T 5 HOH A 74 774 774 HOH HOH . 
T 5 HOH A 75 775 775 HOH HOH . 
T 5 HOH A 76 776 776 HOH HOH . 
T 5 HOH A 77 777 777 HOH HOH . 
T 5 HOH A 78 778 778 HOH HOH . 
T 5 HOH A 79 779 779 HOH HOH . 
T 5 HOH A 80 780 780 HOH HOH . 
T 5 HOH A 81 781 781 HOH HOH . 
T 5 HOH A 82 782 782 HOH HOH . 
T 5 HOH A 83 783 783 HOH HOH . 
T 5 HOH A 84 784 784 HOH HOH . 
T 5 HOH A 85 785 785 HOH HOH . 
T 5 HOH A 86 786 786 HOH HOH . 
T 5 HOH A 87 787 787 HOH HOH . 
T 5 HOH A 88 788 788 HOH HOH . 
T 5 HOH A 89 789 789 HOH HOH . 
T 5 HOH A 90 790 790 HOH HOH . 
T 5 HOH A 91 791 791 HOH HOH . 
T 5 HOH A 92 792 792 HOH HOH . 
T 5 HOH A 93 793 793 HOH HOH . 
T 5 HOH A 94 794 794 HOH HOH . 
T 5 HOH A 95 795 795 HOH HOH . 
T 5 HOH A 96 796 796 HOH HOH . 
T 5 HOH A 97 797 797 HOH HOH . 
T 5 HOH A 98 798 798 HOH HOH . 
T 5 HOH A 99 799 799 HOH HOH . 
T 5 HOH A 100 800 800 HOH HOH . 
T 5 HOH A 101 801 801 HOH HOH . 
T 5 HOH A 102 802 802 HOH HOH . 
T 5 HOH A 103 803 803 HOH HOH . 
T 5 HOH A 104 804 804 HOH HOH . 
T 5 HOH A 105 805 805 HOH HOH . 
T 5 HOH A 106 806 806 HOH HOH . 
T 5 HOH A 107 807 807 HOH HOH . 
T 5 HOH A 108 808 808 HOH HOH . 
T 5 HOH A 109 809 809 HOH HOH . 
T 5 HOH A 110 810 810 HOH HOH . 
T 5 HOH A 111 811 811 HOH HOH . 
T 5 HOH A 112 812 812 HOH HOH . 
T 5 HOH A 113 813 813 HOH HOH . 
T 5 HOH A 114 814 814 HOH HOH . 
T 5 HOH A 115 815 815 HOH HOH . 
T 5 HOH A 116 816 816 HOH HOH . 
T 5 HOH A 117 817 817 HOH HOH . 
T 5 HOH A 118 818 818 HOH HOH . 
T 5 HOH A 119 819 819 HOH HOH . 
T 5 HOH A 120 820 820 HOH HOH . 
T 5 HOH A 121 821 821 HOH HOH . 
T 5 HOH A 122 822 822 HOH HOH . 
T 5 HOH A 123 823 823 HOH HOH . 
T 5 HOH A 124 824 824 HOH HOH . 
T 5 HOH A 125 825 825 HOH HOH . 
T 5 HOH A 126 826 826 HOH HOH . 
T 5 HOH A 127 827 827 HOH HOH . 
T 5 HOH A 128 828 828 HOH HOH . 
T 5 HOH A 129 829 829 HOH HOH . 
T 5 HOH A 130 830 830 HOH HOH . 
T 5 HOH A 131 831 831 HOH HOH . 
T 5 HOH A 132 832 832 HOH HOH . 
T 5 HOH A 133 833 833 HOH HOH . 
T 5 HOH A 134 834 834 HOH HOH . 
T 5 HOH A 135 835 835 HOH HOH . 
T 5 HOH A 136 836 836 HOH HOH . 
T 5 HOH A 137 837 837 HOH HOH . 
T 5 HOH A 138 838 838 HOH HOH . 
T 5 HOH A 139 839 839 HOH HOH . 
T 5 HOH A 140 840 840 HOH HOH . 
T 5 HOH A 141 841 841 HOH HOH . 
T 5 HOH A 142 842 842 HOH HOH . 
T 5 HOH A 143 843 843 HOH HOH . 
T 5 HOH A 144 844 844 HOH HOH . 
T 5 HOH A 145 845 845 HOH HOH . 
T 5 HOH A 146 846 846 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           X 
_atom_site.label_atom_id         UNK 
_atom_site.label_comp_id         UNX 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         J 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               22.305 
_atom_site.Cartn_y               15.783 
_atom_site.Cartn_z               22.242 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        30 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          UNK 
_atom_site.auth_comp_id          UNX 
_atom_site.auth_seq_id           609 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           319 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#