data_4YVP # _model_server_result.job_id uXCqLl-ZEIZTb0byTh1Uhg _model_server_result.datetime_utc '2024-11-07 08:49:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yvp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 4YVP # _exptl.entry_id 4YVP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 494.004 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.88 _cell.angle_gamma 90 _cell.entry_id 4YVP _cell.length_a 49.545 _cell.length_b 76.168 _cell.length_c 88.706 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YVP _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C23 H28 Cl N3 O5 S' _chem_comp.formula_weight 494.004 _chem_comp.id GBM _chem_comp.mon_nstd_flag . _chem_comp.name 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Glibenclamide;Glyburide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C31 GBM sing 83 n n C31 C29 GBM doub 84 n y C31 C32 GBM sing 85 n y C29 C27 GBM sing 86 n y C32 C30 GBM doub 87 n y O6 C26 GBM doub 88 n n C27 C26 GBM sing 89 n n C27 C28 GBM doub 90 n y C30 C28 GBM sing 91 n y C26 N10 GBM sing 92 n n C28 O7 GBM sing 93 n n O3 C17 GBM doub 94 n n N10 C25 GBM sing 95 n n C23 C21 GBM doub 96 n y C23 C19 GBM sing 97 n y O7 C33 GBM sing 98 n n C21 C18 GBM sing 99 n y C25 C20 GBM sing 100 n n N9 C17 GBM sing 101 n n N9 S2 GBM sing 102 n n C17 N8 GBM sing 103 n n C20 C19 GBM sing 104 n n C19 C24 GBM doub 105 n y O5 S2 GBM doub 106 n n C18 S2 GBM sing 107 n n C18 C22 GBM doub 108 n y C14 C12 GBM sing 109 n n C14 C16 GBM sing 110 n n C13 C11 GBM sing 111 n n C13 C15 GBM sing 112 n n S2 O4 GBM doub 113 n n C12 C11 GBM sing 114 n n N8 C11 GBM sing 115 n n C15 C16 GBM sing 116 n n C24 C22 GBM sing 117 n y N8 H1 GBM sing 118 n n N9 H2 GBM sing 119 n n N10 H3 GBM sing 120 n n C11 H4 GBM sing 121 n n C12 H5 GBM sing 122 n n C12 H6 GBM sing 123 n n C13 H7 GBM sing 124 n n C13 H8 GBM sing 125 n n C14 H9 GBM sing 126 n n C14 H10 GBM sing 127 n n C15 H11 GBM sing 128 n n C15 H12 GBM sing 129 n n C16 H13 GBM sing 130 n n C16 H14 GBM sing 131 n n C20 H15 GBM sing 132 n n C20 H16 GBM sing 133 n n C21 H17 GBM sing 134 n n C22 H18 GBM sing 135 n n C23 H19 GBM sing 136 n n C24 H20 GBM sing 137 n n C25 H21 GBM sing 138 n n C25 H22 GBM sing 139 n n C29 H23 GBM sing 140 n n C30 H24 GBM sing 141 n n C32 H25 GBM sing 142 n n C33 H26 GBM sing 143 n n C33 H27 GBM sing 144 n n C33 H28 GBM sing 145 n n # _atom_sites.entry_id 4YVP _atom_sites.fract_transf_matrix[1][1] 0.020184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001723 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013129 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011314 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 401 1 NAP NAP . D 3 GBM A 1 402 1 GBM GBM . E 2 NAP B 1 401 2 NAP NAP . F 3 GBM B 1 402 2 GBM GBM . G 4 HOH A 1 501 136 HOH HOH . G 4 HOH A 2 502 28 HOH HOH . G 4 HOH A 3 503 126 HOH HOH . G 4 HOH A 4 504 41 HOH HOH . G 4 HOH A 5 505 50 HOH HOH . G 4 HOH A 6 506 129 HOH HOH . G 4 HOH A 7 507 79 HOH HOH . G 4 HOH A 8 508 104 HOH HOH . G 4 HOH A 9 509 66 HOH HOH . G 4 HOH A 10 510 17 HOH HOH . G 4 HOH A 11 511 25 HOH HOH . G 4 HOH A 12 512 113 HOH HOH . G 4 HOH A 13 513 87 HOH HOH . G 4 HOH A 14 514 68 HOH HOH . G 4 HOH A 15 515 23 HOH HOH . G 4 HOH A 16 516 31 HOH HOH . G 4 HOH A 17 517 36 HOH HOH . G 4 HOH A 18 518 91 HOH HOH . G 4 HOH A 19 519 76 HOH HOH . G 4 HOH A 20 520 7 HOH HOH . G 4 HOH A 21 521 3 HOH HOH . G 4 HOH A 22 522 80 HOH HOH . G 4 HOH A 23 523 88 HOH HOH . G 4 HOH A 24 524 116 HOH HOH . G 4 HOH A 25 525 1 HOH HOH . G 4 HOH A 26 526 11 HOH HOH . G 4 HOH A 27 527 18 HOH HOH . G 4 HOH A 28 528 98 HOH HOH . G 4 HOH A 29 529 121 HOH HOH . G 4 HOH A 30 530 125 HOH HOH . G 4 HOH A 31 531 27 HOH HOH . G 4 HOH A 32 532 44 HOH HOH . G 4 HOH A 33 533 24 HOH HOH . G 4 HOH A 34 534 131 HOH HOH . G 4 HOH A 35 535 118 HOH HOH . G 4 HOH A 36 536 43 HOH HOH . G 4 HOH A 37 537 10 HOH HOH . G 4 HOH A 38 538 53 HOH HOH . G 4 HOH A 39 539 55 HOH HOH . G 4 HOH A 40 540 106 HOH HOH . G 4 HOH A 41 541 59 HOH HOH . G 4 HOH A 42 542 117 HOH HOH . G 4 HOH A 43 543 51 HOH HOH . G 4 HOH A 44 544 77 HOH HOH . G 4 HOH A 45 545 48 HOH HOH . G 4 HOH A 46 546 92 HOH HOH . G 4 HOH A 47 547 94 HOH HOH . G 4 HOH A 48 548 97 HOH HOH . G 4 HOH A 49 549 111 HOH HOH . G 4 HOH A 50 550 60 HOH HOH . G 4 HOH A 51 551 100 HOH HOH . G 4 HOH A 52 552 63 HOH HOH . G 4 HOH A 53 553 14 HOH HOH . G 4 HOH A 54 554 86 HOH HOH . G 4 HOH A 55 555 90 HOH HOH . G 4 HOH A 56 556 39 HOH HOH . G 4 HOH A 57 557 13 HOH HOH . G 4 HOH A 58 558 67 HOH HOH . G 4 HOH A 59 559 62 HOH HOH . G 4 HOH A 60 560 42 HOH HOH . G 4 HOH A 61 561 89 HOH HOH . G 4 HOH A 62 562 12 HOH HOH . G 4 HOH A 63 563 52 HOH HOH . G 4 HOH A 64 564 124 HOH HOH . G 4 HOH A 65 565 70 HOH HOH . G 4 HOH A 66 566 105 HOH HOH . G 4 HOH A 67 567 119 HOH HOH . G 4 HOH A 68 568 133 HOH HOH . G 4 HOH A 69 569 135 HOH HOH . G 4 HOH A 70 570 93 HOH HOH . G 4 HOH A 71 571 110 HOH HOH . H 4 HOH B 1 501 78 HOH HOH . H 4 HOH B 2 502 56 HOH HOH . H 4 HOH B 3 503 81 HOH HOH . H 4 HOH B 4 504 95 HOH HOH . H 4 HOH B 5 505 8 HOH HOH . H 4 HOH B 6 506 26 HOH HOH . H 4 HOH B 7 507 130 HOH HOH . H 4 HOH B 8 508 34 HOH HOH . H 4 HOH B 9 509 73 HOH HOH . H 4 HOH B 10 510 102 HOH HOH . H 4 HOH B 11 511 96 HOH HOH . H 4 HOH B 12 512 35 HOH HOH . H 4 HOH B 13 513 75 HOH HOH . H 4 HOH B 14 514 32 HOH HOH . H 4 HOH B 15 515 109 HOH HOH . H 4 HOH B 16 516 85 HOH HOH . H 4 HOH B 17 517 29 HOH HOH . H 4 HOH B 18 518 33 HOH HOH . H 4 HOH B 19 519 83 HOH HOH . H 4 HOH B 20 520 6 HOH HOH . H 4 HOH B 21 521 49 HOH HOH . H 4 HOH B 22 522 84 HOH HOH . H 4 HOH B 23 523 64 HOH HOH . H 4 HOH B 24 524 15 HOH HOH . H 4 HOH B 25 525 4 HOH HOH . H 4 HOH B 26 526 71 HOH HOH . H 4 HOH B 27 527 107 HOH HOH . H 4 HOH B 28 528 22 HOH HOH . H 4 HOH B 29 529 19 HOH HOH . H 4 HOH B 30 530 30 HOH HOH . H 4 HOH B 31 531 114 HOH HOH . H 4 HOH B 32 532 127 HOH HOH . H 4 HOH B 33 533 9 HOH HOH . H 4 HOH B 34 534 122 HOH HOH . H 4 HOH B 35 535 5 HOH HOH . H 4 HOH B 36 536 38 HOH HOH . H 4 HOH B 37 537 2 HOH HOH . H 4 HOH B 38 538 37 HOH HOH . H 4 HOH B 39 539 128 HOH HOH . H 4 HOH B 40 540 16 HOH HOH . H 4 HOH B 41 541 120 HOH HOH . H 4 HOH B 42 542 46 HOH HOH . H 4 HOH B 43 543 82 HOH HOH . H 4 HOH B 44 544 45 HOH HOH . H 4 HOH B 45 545 69 HOH HOH . H 4 HOH B 46 546 21 HOH HOH . H 4 HOH B 47 547 101 HOH HOH . H 4 HOH B 48 548 134 HOH HOH . H 4 HOH B 49 549 123 HOH HOH . H 4 HOH B 50 550 40 HOH HOH . H 4 HOH B 51 551 108 HOH HOH . H 4 HOH B 52 552 112 HOH HOH . H 4 HOH B 53 553 20 HOH HOH . H 4 HOH B 54 554 99 HOH HOH . H 4 HOH B 55 555 65 HOH HOH . H 4 HOH B 56 556 115 HOH HOH . H 4 HOH B 57 557 132 HOH HOH . H 4 HOH B 58 558 57 HOH HOH . H 4 HOH B 59 559 47 HOH HOH . H 4 HOH B 60 560 72 HOH HOH . H 4 HOH B 61 561 54 HOH HOH . H 4 HOH B 62 562 58 HOH HOH . H 4 HOH B 63 563 74 HOH HOH . H 4 HOH B 64 564 61 HOH HOH . H 4 HOH B 65 565 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O3 GBM . . . D 3 -52.054 -6.432 42.233 1 12.46 ? O3 GBM 402 A 1 HETATM 2 O O4 GBM . . . D 3 -49.693 -4.981 45.475 1 11.63 ? O4 GBM 402 A 1 HETATM 3 O O5 GBM . . . D 3 -48.026 -4.477 43.711 1 11.71 ? O5 GBM 402 A 1 HETATM 4 O O6 GBM . . . D 3 -53.155 1.82 40.329 1 28.47 ? O6 GBM 402 A 1 HETATM 5 CL CL1 GBM . . . D 3 -54.399 5.837 37.37 1 35.3 ? CL1 GBM 402 A 1 HETATM 6 S S2 GBM . . . D 3 -49.387 -4.569 44.139 1 11.92 ? S2 GBM 402 A 1 HETATM 7 O O7 GBM . . . D 3 -56.098 3.715 42.563 1 30.25 ? O7 GBM 402 A 1 HETATM 8 N N8 GBM . . . D 3 -52.119 -5.354 44.255 1 12.49 ? N8 GBM 402 A 1 HETATM 9 N N9 GBM . . . D 3 -50.125 -5.601 43.098 1 11.91 ? N9 GBM 402 A 1 HETATM 10 N N10 GBM . . . D 3 -54.087 1.967 42.368 1 23.25 ? N10 GBM 402 A 1 HETATM 11 C C11 GBM . . . D 3 -53.543 -5.402 44.604 1 12.42 ? C11 GBM 402 A 1 HETATM 12 C C12 GBM . . . D 3 -54.24 -6.721 44.296 1 12.45 ? C12 GBM 402 A 1 HETATM 13 C C13 GBM . . . D 3 -54.305 -4.242 44.023 1 12.14 ? C13 GBM 402 A 1 HETATM 14 C C14 GBM . . . D 3 -55.734 -6.52 44.008 1 12.31 ? C14 GBM 402 A 1 HETATM 15 C C15 GBM . . . D 3 -55.664 -4.102 44.7 1 12.17 ? C15 GBM 402 A 1 HETATM 16 C C16 GBM . . . D 3 -56.352 -5.45 44.883 1 12.07 ? C16 GBM 402 A 1 HETATM 17 C C17 GBM . . . D 3 -51.489 -5.871 43.156 1 12.27 ? C17 GBM 402 A 1 HETATM 18 C C18 GBM . . . D 3 -50.145 -2.999 43.885 1 12.49 ? C18 GBM 402 A 1 HETATM 19 C C19 GBM . . . D 3 -51.579 -0.646 43.497 1 15.17 ? C19 GBM 402 A 1 HETATM 20 C C20 GBM . . . D 3 -52.221 0.708 43.294 1 17.51 ? C20 GBM 402 A 1 HETATM 21 C C21 GBM . . . D 3 -50.424 -2.567 42.598 1 12.79 ? C21 GBM 402 A 1 HETATM 22 C C22 GBM . . . D 3 -50.551 -2.254 44.979 1 12.98 ? C22 GBM 402 A 1 HETATM 23 C C23 GBM . . . D 3 -51.164 -1.412 42.415 1 13.71 ? C23 GBM 402 A 1 HETATM 24 C C24 GBM . . . D 3 -51.266 -1.088 44.777 1 13.84 ? C24 GBM 402 A 1 HETATM 25 C C25 GBM . . . D 3 -53.62 0.656 42.817 1 20.24 ? C25 GBM 402 A 1 HETATM 26 C C26 GBM . . . D 3 -53.921 2.391 41.111 1 26.5 ? C26 GBM 402 A 1 HETATM 27 C C27 GBM . . . D 3 -54.708 3.587 40.66 1 28.16 ? C27 GBM 402 A 1 HETATM 28 C C28 GBM . . . D 3 -55.812 4.183 41.305 1 29.49 ? C28 GBM 402 A 1 HETATM 29 C C29 GBM . . . D 3 -54.292 4.11 39.433 1 29.48 ? C29 GBM 402 A 1 HETATM 30 C C30 GBM . . . D 3 -56.489 5.239 40.701 1 30.47 ? C30 GBM 402 A 1 HETATM 31 C C31 GBM . . . D 3 -54.966 5.174 38.874 1 30.93 ? C31 GBM 402 A 1 HETATM 32 C C32 GBM . . . D 3 -56.061 5.739 39.484 1 30.43 ? C32 GBM 402 A 1 HETATM 33 C C33 GBM . . . D 3 -57.392 3.993 43.128 1 28.71 ? C33 GBM 402 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 100 _model_server_stats.create_model_time_ms 102 _model_server_stats.query_time_ms 405 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 33 #