data_4YWS # _model_server_result.job_id kjaWkfLqmYzEzVMYKtDl3g _model_server_result.datetime_utc '2024-11-16 15:53:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yws # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 4YWS # _exptl.entry_id 4YWS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YWS _cell.length_a 146.319 _cell.length_b 146.319 _cell.length_c 102.989 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YWS _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 243 A ASP 243 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.616 ? metalc ? metalc2 A OE1 GLU 286 A GLU 286 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc3 A OD2 ASP 313 A ASP 313 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc4 C MG MG . A MG 501 1_555 E O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc5 C MG MG . A MG 501 1_555 E O HOH . A HOH 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc6 C MG MG . A MG 501 1_555 E O HOH . A HOH 649 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc7 B OD2 ASP 243 B ASP 243 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? metalc ? metalc8 B OE1 GLU 286 B GLU 286 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc9 B OD2 ASP 313 B ASP 313 1_555 D MG MG . B MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc10 D MG MG . B MG 501 1_555 F O HOH . B HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YWS _atom_sites.fract_transf_matrix[1][1] 0.006834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 2 MG B 1 501 501 MG MG . E 3 HOH A 1 601 601 HOH HOH . E 3 HOH A 2 602 602 HOH HOH . E 3 HOH A 3 603 603 HOH HOH . E 3 HOH A 4 604 604 HOH HOH . E 3 HOH A 5 605 605 HOH HOH . E 3 HOH A 6 606 606 HOH HOH . E 3 HOH A 7 607 607 HOH HOH . E 3 HOH A 8 608 608 HOH HOH . E 3 HOH A 9 609 610 HOH HOH . E 3 HOH A 10 610 611 HOH HOH . E 3 HOH A 11 611 612 HOH HOH . E 3 HOH A 12 612 613 HOH HOH . E 3 HOH A 13 613 614 HOH HOH . E 3 HOH A 14 614 615 HOH HOH . E 3 HOH A 15 615 616 HOH HOH . E 3 HOH A 16 616 617 HOH HOH . E 3 HOH A 17 617 618 HOH HOH . E 3 HOH A 18 618 619 HOH HOH . E 3 HOH A 19 619 620 HOH HOH . E 3 HOH A 20 620 621 HOH HOH . E 3 HOH A 21 621 622 HOH HOH . E 3 HOH A 22 622 623 HOH HOH . E 3 HOH A 23 623 624 HOH HOH . E 3 HOH A 24 624 625 HOH HOH . E 3 HOH A 25 625 626 HOH HOH . E 3 HOH A 26 626 627 HOH HOH . E 3 HOH A 27 627 628 HOH HOH . E 3 HOH A 28 628 629 HOH HOH . E 3 HOH A 29 629 630 HOH HOH . E 3 HOH A 30 630 631 HOH HOH . E 3 HOH A 31 631 632 HOH HOH . E 3 HOH A 32 632 633 HOH HOH . E 3 HOH A 33 633 634 HOH HOH . E 3 HOH A 34 634 635 HOH HOH . E 3 HOH A 35 635 636 HOH HOH . E 3 HOH A 36 636 637 HOH HOH . E 3 HOH A 37 637 638 HOH HOH . E 3 HOH A 38 638 639 HOH HOH . E 3 HOH A 39 639 640 HOH HOH . E 3 HOH A 40 640 641 HOH HOH . E 3 HOH A 41 641 609 HOH HOH . E 3 HOH A 42 642 642 HOH HOH . E 3 HOH A 43 643 643 HOH HOH . E 3 HOH A 44 644 644 HOH HOH . E 3 HOH A 45 645 645 HOH HOH . E 3 HOH A 46 646 646 HOH HOH . E 3 HOH A 47 647 647 HOH HOH . E 3 HOH A 48 648 648 HOH HOH . E 3 HOH A 49 649 649 HOH HOH . E 3 HOH A 50 650 650 HOH HOH . E 3 HOH A 51 651 651 HOH HOH . E 3 HOH A 52 652 652 HOH HOH . E 3 HOH A 53 653 653 HOH HOH . E 3 HOH A 54 654 654 HOH HOH . E 3 HOH A 55 655 655 HOH HOH . E 3 HOH A 56 656 656 HOH HOH . E 3 HOH A 57 657 657 HOH HOH . F 3 HOH B 1 601 601 HOH HOH . F 3 HOH B 2 602 602 HOH HOH . F 3 HOH B 3 603 603 HOH HOH . F 3 HOH B 4 604 604 HOH HOH . F 3 HOH B 5 605 605 HOH HOH . F 3 HOH B 6 606 606 HOH HOH . F 3 HOH B 7 607 607 HOH HOH . F 3 HOH B 8 608 608 HOH HOH . F 3 HOH B 9 609 609 HOH HOH . F 3 HOH B 10 610 610 HOH HOH . F 3 HOH B 11 611 611 HOH HOH . F 3 HOH B 12 612 612 HOH HOH . F 3 HOH B 13 613 613 HOH HOH . F 3 HOH B 14 614 614 HOH HOH . F 3 HOH B 15 615 615 HOH HOH . F 3 HOH B 16 616 616 HOH HOH . F 3 HOH B 17 617 617 HOH HOH . F 3 HOH B 18 618 618 HOH HOH . F 3 HOH B 19 619 619 HOH HOH . F 3 HOH B 20 620 620 HOH HOH . F 3 HOH B 21 621 621 HOH HOH . F 3 HOH B 22 622 622 HOH HOH . F 3 HOH B 23 623 623 HOH HOH . F 3 HOH B 24 624 624 HOH HOH . F 3 HOH B 25 625 625 HOH HOH . F 3 HOH B 26 626 626 HOH HOH . F 3 HOH B 27 627 627 HOH HOH . F 3 HOH B 28 628 628 HOH HOH . F 3 HOH B 29 629 629 HOH HOH . F 3 HOH B 30 630 630 HOH HOH . F 3 HOH B 31 631 631 HOH HOH . F 3 HOH B 32 632 632 HOH HOH . F 3 HOH B 33 633 633 HOH HOH . F 3 HOH B 34 634 634 HOH HOH . F 3 HOH B 35 635 635 HOH HOH . F 3 HOH B 36 636 637 HOH HOH . F 3 HOH B 37 637 636 HOH HOH . F 3 HOH B 38 638 638 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 47.186 _atom_site.Cartn_y 119.542 _atom_site.Cartn_z -5.238 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 51.73 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #