data_4YX4 # _model_server_result.job_id JKI2JxwuKwfL665lJauAzg _model_server_result.datetime_utc '2024-11-05 01:26:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yx4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4YX4 # _exptl.entry_id 4YX4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.43 _cell.angle_gamma 90 _cell.entry_id 4YX4 _cell.length_a 42.385 _cell.length_b 41.508 _cell.length_c 72.254 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YX4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc4 A O GLN 136 A GLN 137 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc5 A O GLU 204 A GLU 205 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc6 A SG CYS 205 A CYS 206 1_555 C HG MBO . A MBO 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D NP0 FB2 . A FB2 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc8 C HG MBO . A MBO 302 1_555 F O HOH . A HOH 561 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 248 n n CE1 CE2 MBO sing 249 n y CE1 CE6 MBO doub 250 n y CE2 CE3 MBO doub 251 n y CE2 HE2 MBO sing 252 n n CE3 CE4 MBO sing 253 n y CE3 HE3 MBO sing 254 n n CE4 CE5 MBO doub 255 n y CE4 CZ MBO sing 256 n n CE5 CE6 MBO sing 257 n y CE5 HE5 MBO sing 258 n n CE6 HE6 MBO sing 259 n n CZ OZ1 MBO doub 260 n n CZ OZ2 MBO sing 261 n n OZ2 HZ2 MBO sing 262 n n # _atom_sites.entry_id 4YX4 _atom_sites.fract_transf_matrix[1][1] 0.023593 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024092 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014291 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 1 ZN Zn . C 3 MBO A 1 302 1 MBO BE7 . D 4 FB2 A 1 303 1 FB2 S00 . E 5 GOL A 1 304 1 GOL GOL . F 6 HOH A 1 401 159 HOH HOH . F 6 HOH A 2 402 235 HOH HOH . F 6 HOH A 3 403 181 HOH HOH . F 6 HOH A 4 404 205 HOH HOH . F 6 HOH A 5 405 143 HOH HOH . F 6 HOH A 6 406 231 HOH HOH . F 6 HOH A 7 407 137 HOH HOH . F 6 HOH A 8 408 195 HOH HOH . F 6 HOH A 9 409 123 HOH HOH . F 6 HOH A 10 410 67 HOH HOH . F 6 HOH A 11 411 127 HOH HOH . F 6 HOH A 12 412 26 HOH HOH . F 6 HOH A 13 413 62 HOH HOH . F 6 HOH A 14 414 129 HOH HOH . F 6 HOH A 15 415 265 HOH HOH . F 6 HOH A 16 416 65 HOH HOH . F 6 HOH A 17 417 149 HOH HOH . F 6 HOH A 18 418 269 HOH HOH . F 6 HOH A 19 419 83 HOH HOH . F 6 HOH A 20 420 84 HOH HOH . F 6 HOH A 21 421 25 HOH HOH . F 6 HOH A 22 422 8 HOH HOH . F 6 HOH A 23 423 164 HOH HOH . F 6 HOH A 24 424 157 HOH HOH . F 6 HOH A 25 425 16 HOH HOH . F 6 HOH A 26 426 176 HOH HOH . F 6 HOH A 27 427 135 HOH HOH . F 6 HOH A 28 428 272 HOH HOH . F 6 HOH A 29 429 10 HOH HOH . F 6 HOH A 30 430 225 HOH HOH . F 6 HOH A 31 431 148 HOH HOH . F 6 HOH A 32 432 7 HOH HOH . F 6 HOH A 33 433 96 HOH HOH . F 6 HOH A 34 434 5 HOH HOH . F 6 HOH A 35 435 166 HOH HOH . F 6 HOH A 36 436 59 HOH HOH . F 6 HOH A 37 437 99 HOH HOH . F 6 HOH A 38 438 192 HOH HOH . F 6 HOH A 39 439 55 HOH HOH . F 6 HOH A 40 440 186 HOH HOH . F 6 HOH A 41 441 104 HOH HOH . F 6 HOH A 42 442 22 HOH HOH . F 6 HOH A 43 443 45 HOH HOH . F 6 HOH A 44 444 112 HOH HOH . F 6 HOH A 45 445 89 HOH HOH . F 6 HOH A 46 446 47 HOH HOH . F 6 HOH A 47 447 94 HOH HOH . F 6 HOH A 48 448 158 HOH HOH . F 6 HOH A 49 449 108 HOH HOH . F 6 HOH A 50 450 179 HOH HOH . F 6 HOH A 51 451 95 HOH HOH . F 6 HOH A 52 452 116 HOH HOH . F 6 HOH A 53 453 250 HOH HOH . F 6 HOH A 54 454 106 HOH HOH . F 6 HOH A 55 455 1 HOH HOH . F 6 HOH A 56 456 93 HOH HOH . F 6 HOH A 57 457 60 HOH HOH . F 6 HOH A 58 458 208 HOH HOH . F 6 HOH A 59 459 28 HOH HOH . F 6 HOH A 60 460 156 HOH HOH . F 6 HOH A 61 461 239 HOH HOH . F 6 HOH A 62 462 105 HOH HOH . F 6 HOH A 63 463 29 HOH HOH . F 6 HOH A 64 464 111 HOH HOH . F 6 HOH A 65 465 103 HOH HOH . F 6 HOH A 66 466 85 HOH HOH . F 6 HOH A 67 467 64 HOH HOH . F 6 HOH A 68 468 82 HOH HOH . F 6 HOH A 69 469 101 HOH HOH . F 6 HOH A 70 470 2 HOH HOH . F 6 HOH A 71 471 24 HOH HOH . F 6 HOH A 72 472 23 HOH HOH . F 6 HOH A 73 473 151 HOH HOH . F 6 HOH A 74 474 165 HOH HOH . F 6 HOH A 75 475 13 HOH HOH . F 6 HOH A 76 476 39 HOH HOH . F 6 HOH A 77 477 58 HOH HOH . F 6 HOH A 78 478 110 HOH HOH . F 6 HOH A 79 479 81 HOH HOH . F 6 HOH A 80 480 11 HOH HOH . F 6 HOH A 81 481 9 HOH HOH . F 6 HOH A 82 482 91 HOH HOH . F 6 HOH A 83 483 119 HOH HOH . F 6 HOH A 84 484 100 HOH HOH . F 6 HOH A 85 485 140 HOH HOH . F 6 HOH A 86 486 19 HOH HOH . F 6 HOH A 87 487 126 HOH HOH . F 6 HOH A 88 488 120 HOH HOH . F 6 HOH A 89 489 88 HOH HOH . F 6 HOH A 90 490 102 HOH HOH . F 6 HOH A 91 491 92 HOH HOH . F 6 HOH A 92 492 35 HOH HOH . F 6 HOH A 93 493 152 HOH HOH . F 6 HOH A 94 494 53 HOH HOH . F 6 HOH A 95 495 56 HOH HOH . F 6 HOH A 96 496 3 HOH HOH . F 6 HOH A 97 497 49 HOH HOH . F 6 HOH A 98 498 136 HOH HOH . F 6 HOH A 99 499 86 HOH HOH . F 6 HOH A 100 500 36 HOH HOH . F 6 HOH A 101 501 44 HOH HOH . F 6 HOH A 102 502 216 HOH HOH . F 6 HOH A 103 503 222 HOH HOH . F 6 HOH A 104 504 197 HOH HOH . F 6 HOH A 105 505 255 HOH HOH . F 6 HOH A 106 506 200 HOH HOH . F 6 HOH A 107 507 130 HOH HOH . F 6 HOH A 108 508 15 HOH HOH . F 6 HOH A 109 509 122 HOH HOH . F 6 HOH A 110 510 154 HOH HOH . F 6 HOH A 111 511 90 HOH HOH . F 6 HOH A 112 512 170 HOH HOH . F 6 HOH A 113 513 98 HOH HOH . F 6 HOH A 114 514 38 HOH HOH . F 6 HOH A 115 515 147 HOH HOH . F 6 HOH A 116 516 133 HOH HOH . F 6 HOH A 117 517 75 HOH HOH . F 6 HOH A 118 518 139 HOH HOH . F 6 HOH A 119 519 115 HOH HOH . F 6 HOH A 120 520 252 HOH HOH . F 6 HOH A 121 521 175 HOH HOH . F 6 HOH A 122 522 188 HOH HOH . F 6 HOH A 123 523 257 HOH HOH . F 6 HOH A 124 524 145 HOH HOH . F 6 HOH A 125 525 12 HOH HOH . F 6 HOH A 126 526 125 HOH HOH . F 6 HOH A 127 527 131 HOH HOH . F 6 HOH A 128 528 271 HOH HOH . F 6 HOH A 129 529 17 HOH HOH . F 6 HOH A 130 530 266 HOH HOH . F 6 HOH A 131 531 168 HOH HOH . F 6 HOH A 132 532 171 HOH HOH . F 6 HOH A 133 533 34 HOH HOH . F 6 HOH A 134 534 194 HOH HOH . F 6 HOH A 135 535 193 HOH HOH . F 6 HOH A 136 536 42 HOH HOH . F 6 HOH A 137 537 21 HOH HOH . F 6 HOH A 138 538 132 HOH HOH . F 6 HOH A 139 539 31 HOH HOH . F 6 HOH A 140 540 51 HOH HOH . F 6 HOH A 141 541 234 HOH HOH . F 6 HOH A 142 542 4 HOH HOH . F 6 HOH A 143 543 251 HOH HOH . F 6 HOH A 144 544 162 HOH HOH . F 6 HOH A 145 545 46 HOH HOH . F 6 HOH A 146 546 138 HOH HOH . F 6 HOH A 147 547 87 HOH HOH . F 6 HOH A 148 548 187 HOH HOH . F 6 HOH A 149 549 198 HOH HOH . F 6 HOH A 150 550 57 HOH HOH . F 6 HOH A 151 551 97 HOH HOH . F 6 HOH A 152 552 43 HOH HOH . F 6 HOH A 153 553 199 HOH HOH . F 6 HOH A 154 554 134 HOH HOH . F 6 HOH A 155 555 6 HOH HOH . F 6 HOH A 156 556 114 HOH HOH . F 6 HOH A 157 557 30 HOH HOH . F 6 HOH A 158 558 238 HOH HOH . F 6 HOH A 159 559 20 HOH HOH . F 6 HOH A 160 560 212 HOH HOH . F 6 HOH A 161 561 146 HOH HOH . F 6 HOH A 162 562 244 HOH HOH . F 6 HOH A 163 563 27 HOH HOH . F 6 HOH A 164 564 189 HOH HOH . F 6 HOH A 165 565 215 HOH HOH . F 6 HOH A 166 566 167 HOH HOH . F 6 HOH A 167 567 50 HOH HOH . F 6 HOH A 168 568 201 HOH HOH . F 6 HOH A 169 569 144 HOH HOH . F 6 HOH A 170 570 48 HOH HOH . F 6 HOH A 171 571 232 HOH HOH . F 6 HOH A 172 572 118 HOH HOH . F 6 HOH A 173 573 174 HOH HOH . F 6 HOH A 174 574 196 HOH HOH . F 6 HOH A 175 575 183 HOH HOH . F 6 HOH A 176 576 219 HOH HOH . F 6 HOH A 177 577 260 HOH HOH . F 6 HOH A 178 578 150 HOH HOH . F 6 HOH A 179 579 177 HOH HOH . F 6 HOH A 180 580 207 HOH HOH . F 6 HOH A 181 581 161 HOH HOH . F 6 HOH A 182 582 121 HOH HOH . F 6 HOH A 183 583 173 HOH HOH . F 6 HOH A 184 584 128 HOH HOH . F 6 HOH A 185 585 286 HOH HOH . F 6 HOH A 186 586 210 HOH HOH . F 6 HOH A 187 587 124 HOH HOH . F 6 HOH A 188 588 182 HOH HOH . F 6 HOH A 189 589 78 HOH HOH . F 6 HOH A 190 590 37 HOH HOH . F 6 HOH A 191 591 227 HOH HOH . F 6 HOH A 192 592 204 HOH HOH . F 6 HOH A 193 593 261 HOH HOH . F 6 HOH A 194 594 233 HOH HOH . F 6 HOH A 195 595 274 HOH HOH . F 6 HOH A 196 596 155 HOH HOH . F 6 HOH A 197 597 61 HOH HOH . F 6 HOH A 198 598 228 HOH HOH . F 6 HOH A 199 599 66 HOH HOH . F 6 HOH A 200 600 263 HOH HOH . F 6 HOH A 201 601 248 HOH HOH . F 6 HOH A 202 602 117 HOH HOH . F 6 HOH A 203 603 160 HOH HOH . F 6 HOH A 204 604 142 HOH HOH . F 6 HOH A 205 605 163 HOH HOH . F 6 HOH A 206 606 270 HOH HOH . F 6 HOH A 207 607 243 HOH HOH . F 6 HOH A 208 608 32 HOH HOH . F 6 HOH A 209 609 211 HOH HOH . F 6 HOH A 210 610 289 HOH HOH . F 6 HOH A 211 611 217 HOH HOH . F 6 HOH A 212 612 276 HOH HOH . F 6 HOH A 213 613 113 HOH HOH . F 6 HOH A 214 614 185 HOH HOH . F 6 HOH A 215 615 180 HOH HOH . F 6 HOH A 216 616 41 HOH HOH . F 6 HOH A 217 617 202 HOH HOH . F 6 HOH A 218 618 281 HOH HOH . F 6 HOH A 219 619 71 HOH HOH . F 6 HOH A 220 620 109 HOH HOH . F 6 HOH A 221 621 70 HOH HOH . F 6 HOH A 222 622 76 HOH HOH . F 6 HOH A 223 623 33 HOH HOH . F 6 HOH A 224 624 184 HOH HOH . F 6 HOH A 225 625 74 HOH HOH . F 6 HOH A 226 626 169 HOH HOH . F 6 HOH A 227 627 206 HOH HOH . F 6 HOH A 228 628 141 HOH HOH . F 6 HOH A 229 629 52 HOH HOH . F 6 HOH A 230 630 221 HOH HOH . F 6 HOH A 231 631 73 HOH HOH . F 6 HOH A 232 632 77 HOH HOH . F 6 HOH A 233 633 290 HOH HOH . F 6 HOH A 234 634 190 HOH HOH . F 6 HOH A 235 635 220 HOH HOH . F 6 HOH A 236 636 178 HOH HOH . F 6 HOH A 237 637 54 HOH HOH . F 6 HOH A 238 638 229 HOH HOH . F 6 HOH A 239 639 40 HOH HOH . F 6 HOH A 240 640 218 HOH HOH . F 6 HOH A 241 641 107 HOH HOH . F 6 HOH A 242 642 191 HOH HOH . F 6 HOH A 243 643 242 HOH HOH . F 6 HOH A 244 644 284 HOH HOH . F 6 HOH A 245 645 203 HOH HOH . F 6 HOH A 246 646 72 HOH HOH . F 6 HOH A 247 647 285 HOH HOH . F 6 HOH A 248 648 79 HOH HOH . F 6 HOH A 249 649 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . . . C 3 1.169 12.579 94.624 1 14.78 ? HG MBO 302 A 1 HETATM 2 C CE1 MBO . . . C 3 1.855 13.295 96.373 1 19.07 ? CE1 MBO 302 A 1 HETATM 3 C CE2 MBO . . . C 3 1.967 12.464 97.492 1 20.15 ? CE2 MBO 302 A 1 HETATM 4 C CE3 MBO . . . C 3 2.435 12.959 98.714 1 21.37 ? CE3 MBO 302 A 1 HETATM 5 C CE4 MBO . . . C 3 2.813 14.302 98.839 1 22.75 ? CE4 MBO 302 A 1 HETATM 6 C CE5 MBO . . . C 3 2.707 15.143 97.722 1 21.02 ? CE5 MBO 302 A 1 HETATM 7 C CE6 MBO . . . C 3 2.235 14.636 96.502 1 20.09 ? CE6 MBO 302 A 1 HETATM 8 C CZ MBO . . . C 3 3.304 14.767 100.164 1 26.15 ? CZ MBO 302 A 1 HETATM 9 O OZ1 MBO . . . C 3 3.78 16.024 100.15 1 25.33 -1 OZ1 MBO 302 A 1 HETATM 10 O OZ2 MBO . . . C 3 3.291 14.108 101.187 1 28.17 ? OZ2 MBO 302 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #