data_4YXO # _model_server_result.job_id v6wxq2nKFy6agKF4qGz3hw _model_server_result.datetime_utc '2024-11-22 06:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 4YXO # _exptl.entry_id 4YXO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 321.703 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MERCURIBENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.29 _cell.angle_gamma 90 _cell.entry_id 4YXO _cell.length_a 42.379 _cell.length_b 41.575 _cell.length_c 72.338 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc4 A O GLN 136 A GLN 137 1_555 B HG MBO . A MBO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.915 ? metalc ? metalc5 A O GLU 204 A GLU 205 1_555 B HG MBO . A MBO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.082 ? metalc ? metalc6 A SG CYS 205 A CYS 206 1_555 B HG MBO . A MBO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc7 C ZN ZN . A ZN 302 1_555 F N 4JC . A 4JC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.91 ? # _chem_comp.formula 'C7 H5 Hg O2' _chem_comp.formula_weight 321.703 _chem_comp.id MBO _chem_comp.mon_nstd_flag . _chem_comp.name 'MERCURIBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HG CE1 MBO sing 254 n n CE1 CE2 MBO sing 255 n y CE1 CE6 MBO doub 256 n y CE2 CE3 MBO doub 257 n y CE2 HE2 MBO sing 258 n n CE3 CE4 MBO sing 259 n y CE3 HE3 MBO sing 260 n n CE4 CE5 MBO doub 261 n y CE4 CZ MBO sing 262 n n CE5 CE6 MBO sing 263 n y CE5 HE5 MBO sing 264 n n CE6 HE6 MBO sing 265 n n CZ OZ1 MBO doub 266 n n CZ OZ2 MBO sing 267 n n OZ2 HZ2 MBO sing 268 n n # _atom_sites.entry_id 4YXO _atom_sites.fract_transf_matrix[1][1] 0.023597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006009 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024053 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014265 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MBO A 1 301 1 MBO BE7 . C 3 ZN A 1 302 1 ZN ZN . D 4 GOL A 1 303 1 GOL GOL . E 5 4JC A 1 304 2 4JC S02 . F 5 4JC A 1 305 3 4JC S02 . G 6 HOH A 1 401 259 HOH HOH . G 6 HOH A 2 402 26 HOH HOH . G 6 HOH A 3 403 206 HOH HOH . G 6 HOH A 4 404 188 HOH HOH . G 6 HOH A 5 405 218 HOH HOH . G 6 HOH A 6 406 200 HOH HOH . G 6 HOH A 7 407 48 HOH HOH . G 6 HOH A 8 408 16 HOH HOH . G 6 HOH A 9 409 68 HOH HOH . G 6 HOH A 10 410 257 HOH HOH . G 6 HOH A 11 411 45 HOH HOH . G 6 HOH A 12 412 283 HOH HOH . G 6 HOH A 13 413 44 HOH HOH . G 6 HOH A 14 414 258 HOH HOH . G 6 HOH A 15 415 133 HOH HOH . G 6 HOH A 16 416 184 HOH HOH . G 6 HOH A 17 417 130 HOH HOH . G 6 HOH A 18 418 30 HOH HOH . G 6 HOH A 19 419 57 HOH HOH . G 6 HOH A 20 420 14 HOH HOH . G 6 HOH A 21 421 62 HOH HOH . G 6 HOH A 22 422 220 HOH HOH . G 6 HOH A 23 423 33 HOH HOH . G 6 HOH A 24 424 32 HOH HOH . G 6 HOH A 25 425 141 HOH HOH . G 6 HOH A 26 426 240 HOH HOH . G 6 HOH A 27 427 172 HOH HOH . G 6 HOH A 28 428 5 HOH HOH . G 6 HOH A 29 429 11 HOH HOH . G 6 HOH A 30 430 152 HOH HOH . G 6 HOH A 31 431 148 HOH HOH . G 6 HOH A 32 432 42 HOH HOH . G 6 HOH A 33 433 186 HOH HOH . G 6 HOH A 34 434 157 HOH HOH . G 6 HOH A 35 435 4 HOH HOH . G 6 HOH A 36 436 135 HOH HOH . G 6 HOH A 37 437 58 HOH HOH . G 6 HOH A 38 438 254 HOH HOH . G 6 HOH A 39 439 197 HOH HOH . G 6 HOH A 40 440 41 HOH HOH . G 6 HOH A 41 441 1 HOH HOH . G 6 HOH A 42 442 180 HOH HOH . G 6 HOH A 43 443 8 HOH HOH . G 6 HOH A 44 444 174 HOH HOH . G 6 HOH A 45 445 230 HOH HOH . G 6 HOH A 46 446 39 HOH HOH . G 6 HOH A 47 447 242 HOH HOH . G 6 HOH A 48 448 142 HOH HOH . G 6 HOH A 49 449 245 HOH HOH . G 6 HOH A 50 450 143 HOH HOH . G 6 HOH A 51 451 195 HOH HOH . G 6 HOH A 52 452 6 HOH HOH . G 6 HOH A 53 453 159 HOH HOH . G 6 HOH A 54 454 145 HOH HOH . G 6 HOH A 55 455 203 HOH HOH . G 6 HOH A 56 456 225 HOH HOH . G 6 HOH A 57 457 65 HOH HOH . G 6 HOH A 58 458 199 HOH HOH . G 6 HOH A 59 459 139 HOH HOH . G 6 HOH A 60 460 249 HOH HOH . G 6 HOH A 61 461 2 HOH HOH . G 6 HOH A 62 462 171 HOH HOH . G 6 HOH A 63 463 51 HOH HOH . G 6 HOH A 64 464 146 HOH HOH . G 6 HOH A 65 465 129 HOH HOH . G 6 HOH A 66 466 251 HOH HOH . G 6 HOH A 67 467 52 HOH HOH . G 6 HOH A 68 468 136 HOH HOH . G 6 HOH A 69 469 29 HOH HOH . G 6 HOH A 70 470 15 HOH HOH . G 6 HOH A 71 471 10 HOH HOH . G 6 HOH A 72 472 147 HOH HOH . G 6 HOH A 73 473 264 HOH HOH . G 6 HOH A 74 474 211 HOH HOH . G 6 HOH A 75 475 138 HOH HOH . G 6 HOH A 76 476 18 HOH HOH . G 6 HOH A 77 477 50 HOH HOH . G 6 HOH A 78 478 288 HOH HOH . G 6 HOH A 79 479 131 HOH HOH . G 6 HOH A 80 480 246 HOH HOH . G 6 HOH A 81 481 164 HOH HOH . G 6 HOH A 82 482 185 HOH HOH . G 6 HOH A 83 483 175 HOH HOH . G 6 HOH A 84 484 7 HOH HOH . G 6 HOH A 85 485 25 HOH HOH . G 6 HOH A 86 486 153 HOH HOH . G 6 HOH A 87 487 3 HOH HOH . G 6 HOH A 88 488 205 HOH HOH . G 6 HOH A 89 489 111 HOH HOH . G 6 HOH A 90 490 12 HOH HOH . G 6 HOH A 91 491 253 HOH HOH . G 6 HOH A 92 492 21 HOH HOH . G 6 HOH A 93 493 47 HOH HOH . G 6 HOH A 94 494 137 HOH HOH . G 6 HOH A 95 495 70 HOH HOH . G 6 HOH A 96 496 154 HOH HOH . G 6 HOH A 97 497 214 HOH HOH . G 6 HOH A 98 498 168 HOH HOH . G 6 HOH A 99 499 155 HOH HOH . G 6 HOH A 100 500 166 HOH HOH . G 6 HOH A 101 501 194 HOH HOH . G 6 HOH A 102 502 79 HOH HOH . G 6 HOH A 103 503 37 HOH HOH . G 6 HOH A 104 504 13 HOH HOH . G 6 HOH A 105 505 189 HOH HOH . G 6 HOH A 106 506 151 HOH HOH . G 6 HOH A 107 507 34 HOH HOH . G 6 HOH A 108 508 216 HOH HOH . G 6 HOH A 109 509 169 HOH HOH . G 6 HOH A 110 510 71 HOH HOH . G 6 HOH A 111 511 176 HOH HOH . G 6 HOH A 112 512 277 HOH HOH . G 6 HOH A 113 513 201 HOH HOH . G 6 HOH A 114 514 165 HOH HOH . G 6 HOH A 115 515 134 HOH HOH . G 6 HOH A 116 516 255 HOH HOH . G 6 HOH A 117 517 150 HOH HOH . G 6 HOH A 118 518 9 HOH HOH . G 6 HOH A 119 519 226 HOH HOH . G 6 HOH A 120 520 275 HOH HOH . G 6 HOH A 121 521 64 HOH HOH . G 6 HOH A 122 522 281 HOH HOH . G 6 HOH A 123 523 179 HOH HOH . G 6 HOH A 124 524 160 HOH HOH . G 6 HOH A 125 525 20 HOH HOH . G 6 HOH A 126 526 43 HOH HOH . G 6 HOH A 127 527 196 HOH HOH . G 6 HOH A 128 528 162 HOH HOH . G 6 HOH A 129 529 27 HOH HOH . G 6 HOH A 130 530 212 HOH HOH . G 6 HOH A 131 531 177 HOH HOH . G 6 HOH A 132 532 163 HOH HOH . G 6 HOH A 133 533 17 HOH HOH . G 6 HOH A 134 534 140 HOH HOH . G 6 HOH A 135 535 22 HOH HOH . G 6 HOH A 136 536 190 HOH HOH . G 6 HOH A 137 537 60 HOH HOH . G 6 HOH A 138 538 241 HOH HOH . G 6 HOH A 139 539 81 HOH HOH . G 6 HOH A 140 540 167 HOH HOH . G 6 HOH A 141 541 187 HOH HOH . G 6 HOH A 142 542 228 HOH HOH . G 6 HOH A 143 543 149 HOH HOH . G 6 HOH A 144 544 73 HOH HOH . G 6 HOH A 145 545 233 HOH HOH . G 6 HOH A 146 546 132 HOH HOH . G 6 HOH A 147 547 94 HOH HOH . G 6 HOH A 148 548 127 HOH HOH . G 6 HOH A 149 549 156 HOH HOH . G 6 HOH A 150 550 202 HOH HOH . G 6 HOH A 151 551 273 HOH HOH . G 6 HOH A 152 552 35 HOH HOH . G 6 HOH A 153 553 198 HOH HOH . G 6 HOH A 154 554 75 HOH HOH . G 6 HOH A 155 555 23 HOH HOH . G 6 HOH A 156 556 244 HOH HOH . G 6 HOH A 157 557 31 HOH HOH . G 6 HOH A 158 558 285 HOH HOH . G 6 HOH A 159 559 28 HOH HOH . G 6 HOH A 160 560 67 HOH HOH . G 6 HOH A 161 561 59 HOH HOH . G 6 HOH A 162 562 284 HOH HOH . G 6 HOH A 163 563 266 HOH HOH . G 6 HOH A 164 564 63 HOH HOH . G 6 HOH A 165 565 66 HOH HOH . G 6 HOH A 166 566 40 HOH HOH . G 6 HOH A 167 567 260 HOH HOH . G 6 HOH A 168 568 274 HOH HOH . G 6 HOH A 169 569 36 HOH HOH . G 6 HOH A 170 570 46 HOH HOH . G 6 HOH A 171 571 158 HOH HOH . G 6 HOH A 172 572 221 HOH HOH . G 6 HOH A 173 573 270 HOH HOH . G 6 HOH A 174 574 229 HOH HOH . G 6 HOH A 175 575 144 HOH HOH . G 6 HOH A 176 576 280 HOH HOH . G 6 HOH A 177 577 261 HOH HOH . G 6 HOH A 178 578 209 HOH HOH . G 6 HOH A 179 579 173 HOH HOH . G 6 HOH A 180 580 224 HOH HOH . G 6 HOH A 181 581 101 HOH HOH . G 6 HOH A 182 582 234 HOH HOH . G 6 HOH A 183 583 276 HOH HOH . G 6 HOH A 184 584 77 HOH HOH . G 6 HOH A 185 585 114 HOH HOH . G 6 HOH A 186 586 263 HOH HOH . G 6 HOH A 187 587 54 HOH HOH . G 6 HOH A 188 588 38 HOH HOH . G 6 HOH A 189 589 210 HOH HOH . G 6 HOH A 190 590 170 HOH HOH . G 6 HOH A 191 591 243 HOH HOH . G 6 HOH A 192 592 217 HOH HOH . G 6 HOH A 193 593 227 HOH HOH . G 6 HOH A 194 594 290 HOH HOH . G 6 HOH A 195 595 262 HOH HOH . G 6 HOH A 196 596 267 HOH HOH . G 6 HOH A 197 597 181 HOH HOH . G 6 HOH A 198 598 231 HOH HOH . G 6 HOH A 199 599 24 HOH HOH . G 6 HOH A 200 600 208 HOH HOH . G 6 HOH A 201 601 117 HOH HOH . G 6 HOH A 202 602 237 HOH HOH . G 6 HOH A 203 603 250 HOH HOH . G 6 HOH A 204 604 286 HOH HOH . G 6 HOH A 205 605 219 HOH HOH . G 6 HOH A 206 606 161 HOH HOH . G 6 HOH A 207 607 193 HOH HOH . G 6 HOH A 208 608 56 HOH HOH . G 6 HOH A 209 609 119 HOH HOH . G 6 HOH A 210 610 292 HOH HOH . G 6 HOH A 211 611 213 HOH HOH . G 6 HOH A 212 612 86 HOH HOH . G 6 HOH A 213 613 271 HOH HOH . G 6 HOH A 214 614 110 HOH HOH . G 6 HOH A 215 615 238 HOH HOH . G 6 HOH A 216 616 222 HOH HOH . G 6 HOH A 217 617 287 HOH HOH . G 6 HOH A 218 618 232 HOH HOH . G 6 HOH A 219 619 215 HOH HOH . G 6 HOH A 220 620 296 HOH HOH . G 6 HOH A 221 621 112 HOH HOH . G 6 HOH A 222 622 183 HOH HOH . G 6 HOH A 223 623 268 HOH HOH . G 6 HOH A 224 624 295 HOH HOH . G 6 HOH A 225 625 125 HOH HOH . G 6 HOH A 226 626 247 HOH HOH . G 6 HOH A 227 627 113 HOH HOH . G 6 HOH A 228 628 291 HOH HOH . G 6 HOH A 229 629 128 HOH HOH . G 6 HOH A 230 630 108 HOH HOH . G 6 HOH A 231 631 124 HOH HOH . G 6 HOH A 232 632 191 HOH HOH . G 6 HOH A 233 633 116 HOH HOH . G 6 HOH A 234 634 115 HOH HOH . G 6 HOH A 235 635 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 HG HG MBO . . . B 2 1.33 12.516 94.797 1 14.77 ? HG MBO 301 A 1 HETATM 2 C CE1 MBO . . . B 2 2.034 13.241 96.554 1 17.68 ? CE1 MBO 301 A 1 HETATM 3 C CE2 MBO . . . B 2 2.114 12.415 97.693 1 18.84 ? CE2 MBO 301 A 1 HETATM 4 C CE3 MBO . . . B 2 2.602 12.904 98.907 1 20.35 ? CE3 MBO 301 A 1 HETATM 5 C CE4 MBO . . . B 2 3.03 14.234 99 1 21.1 ? CE4 MBO 301 A 1 HETATM 6 C CE5 MBO . . . B 2 2.96 15.073 97.881 1 20.16 ? CE5 MBO 301 A 1 HETATM 7 C CE6 MBO . . . B 2 2.472 14.577 96.667 1 19.27 ? CE6 MBO 301 A 1 HETATM 8 C CZ MBO . . . B 2 3.535 14.696 100.318 1 23.22 ? CZ MBO 301 A 1 HETATM 9 O OZ1 MBO . . . B 2 4.024 15.947 100.3 1 22.61 -1 OZ1 MBO 301 A 1 HETATM 10 O OZ2 MBO . . . B 2 3.528 14.047 101.347 1 24.32 ? OZ2 MBO 301 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #