data_4YY0
#
_model_server_result.job_id            ZHkzvhVb_H2tjuB4rYbqOQ 
_model_server_result.datetime_utc      '2024-10-19 21:38:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yy0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":402}' 
#
_entry.id    4YY0 
#
_exptl.entry_id    4YY0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.75 
_cell.angle_gamma         90 
_cell.entry_id            4YY0 
_cell.length_a            67.61 
_cell.length_b            106.257 
_cell.length_c            125.277 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YY0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 B SG CYS 137 B CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 42 A CYS 42 1_555 A SG CYS 277 A CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 55 A CYS 55 1_555 A SG CYS 67 A CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf4 A SG CYS 90 A CYS 90 1_555 A SG CYS 135 A CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf5 A SG CYS 281 A CYS 281 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf6 B SG CYS 144 B CYS 473 1_555 B SG CYS 148 B CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf7 C SG CYS 4 C CYS 4 1_555 D SG CYS 137 D CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? 
disulf ? disulf8 C SG CYS 42 C CYS 42 1_555 C SG CYS 277 C CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf9 C SG CYS 55 C CYS 55 1_555 C SG CYS 67 C CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 C SG CYS 90 C CYS 90 1_555 C SG CYS 135 C CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
disulf ? disulf11 C SG CYS 281 C CYS 281 1_555 C SG CYS 305 C CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf12 D SG CYS 144 D CYS 473 1_555 D SG CYS 148 D CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? 
disulf ? disulf13 E SG CYS 4 E CYS 4 1_555 F SG CYS 137 F CYS 466 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
disulf ? disulf14 E SG CYS 42 E CYS 42 1_555 E SG CYS 277 E CYS 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf15 E SG CYS 55 E CYS 55 1_555 E SG CYS 67 E CYS 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf16 E SG CYS 90 E CYS 90 1_555 E SG CYS 135 E CYS 135 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf17 E SG CYS 281 E CYS 281 1_555 E SG CYS 305 E CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf18 F SG CYS 144 F CYS 473 1_555 F SG CYS 148 F CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
covale ? covale1 A ND2 ASN 23 A ASN 23 1_555 G C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale2 A ND2 ASN 167 A ASN 167 1_555 H C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 C ND2 ASN 23 C ASN 23 1_555 I C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? 
covale ? covale4 C ND2 ASN 167 C ASN 167 1_555 J C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale5 D ND2 ASN 154 D ASN 483 1_555 K C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale6 E ND2 ASN 23 E ASN 23 1_555 L C1 NAG . E NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.416 ? 
covale ? covale7 E ND2 ASN 167 E ASN 167 1_555 M C1 NAG . E NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     4YY0 
_atom_sites.fract_transf_matrix[1][1]    0.014791 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003347 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009411 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008184 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 3 NAG A 1 401 326 NAG NAG . 
H 3 NAG A 1 402 401 NAG NAG . 
I 3 NAG C 1 401 326 NAG NAG . 
J 3 NAG C 1 402 401 NAG NAG . 
K 3 NAG D 1 501 604 NAG NAG . 
L 3 NAG E 1 401 326 NAG NAG . 
M 3 NAG E 1 402 401 NAG NAG . 
N 4 HOH A 1 501 501 HOH HOH . 
N 4 HOH A 2 502 502 HOH HOH . 
N 4 HOH A 3 503 503 HOH HOH . 
N 4 HOH A 4 504 504 HOH HOH . 
N 4 HOH A 5 505 505 HOH HOH . 
N 4 HOH A 6 506 506 HOH HOH . 
N 4 HOH A 7 507 507 HOH HOH . 
N 4 HOH A 8 508 508 HOH HOH . 
N 4 HOH A 9 509 509 HOH HOH . 
N 4 HOH A 10 510 510 HOH HOH . 
N 4 HOH A 11 511 511 HOH HOH . 
N 4 HOH A 12 512 512 HOH HOH . 
N 4 HOH A 13 513 513 HOH HOH . 
N 4 HOH A 14 514 514 HOH HOH . 
N 4 HOH A 15 515 515 HOH HOH . 
N 4 HOH A 16 516 516 HOH HOH . 
N 4 HOH A 17 517 517 HOH HOH . 
N 4 HOH A 18 518 518 HOH HOH . 
N 4 HOH A 19 519 519 HOH HOH . 
N 4 HOH A 20 520 520 HOH HOH . 
N 4 HOH A 21 521 521 HOH HOH . 
N 4 HOH A 22 522 522 HOH HOH . 
N 4 HOH A 23 523 523 HOH HOH . 
N 4 HOH A 24 524 524 HOH HOH . 
N 4 HOH A 25 525 525 HOH HOH . 
N 4 HOH A 26 526 526 HOH HOH . 
N 4 HOH A 27 527 527 HOH HOH . 
N 4 HOH A 28 528 528 HOH HOH . 
N 4 HOH A 29 529 529 HOH HOH . 
N 4 HOH A 30 530 530 HOH HOH . 
O 4 HOH B 1 501 501 HOH HOH . 
P 4 HOH C 1 501 501 HOH HOH . 
P 4 HOH C 2 502 502 HOH HOH . 
P 4 HOH C 3 503 503 HOH HOH . 
P 4 HOH C 4 504 504 HOH HOH . 
P 4 HOH C 5 505 505 HOH HOH . 
P 4 HOH C 6 506 506 HOH HOH . 
P 4 HOH C 7 507 507 HOH HOH . 
P 4 HOH C 8 508 508 HOH HOH . 
P 4 HOH C 9 509 509 HOH HOH . 
P 4 HOH C 10 510 510 HOH HOH . 
P 4 HOH C 11 511 511 HOH HOH . 
P 4 HOH C 12 512 512 HOH HOH . 
P 4 HOH C 13 513 513 HOH HOH . 
P 4 HOH C 14 514 514 HOH HOH . 
P 4 HOH C 15 515 515 HOH HOH . 
Q 4 HOH D 1 701 701 HOH HOH . 
Q 4 HOH D 2 702 702 HOH HOH . 
Q 4 HOH D 3 703 703 HOH HOH . 
Q 4 HOH D 4 704 704 HOH HOH . 
Q 4 HOH D 5 705 705 HOH HOH . 
R 4 HOH E 1 501 501 HOH HOH . 
R 4 HOH E 2 502 502 HOH HOH . 
R 4 HOH E 3 503 503 HOH HOH . 
R 4 HOH E 4 504 504 HOH HOH . 
R 4 HOH E 5 505 505 HOH HOH . 
R 4 HOH E 6 506 506 HOH HOH . 
R 4 HOH E 7 507 507 HOH HOH . 
R 4 HOH E 8 508 508 HOH HOH . 
R 4 HOH E 9 509 509 HOH HOH . 
R 4 HOH E 10 510 510 HOH HOH . 
R 4 HOH E 11 511 511 HOH HOH . 
R 4 HOH E 12 512 512 HOH HOH . 
R 4 HOH E 13 513 513 HOH HOH . 
S 4 HOH F 1 501 501 HOH HOH . 
S 4 HOH F 2 502 502 HOH HOH . 
S 4 HOH F 3 503 503 HOH HOH . 
S 4 HOH F 4 504 504 HOH HOH . 
S 4 HOH F 5 505 505 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . H 3 -53.988 -25.926 64.877 1 77.94 ? C1 NAG 402 A 1 
HETATM 2 C C2 NAG . . . H 3 -53.87 -27.093 65.859 1 80.32 ? C2 NAG 402 A 1 
HETATM 3 C C3 NAG . . . H 3 -55.063 -28.032 65.721 1 86.89 ? C3 NAG 402 A 1 
HETATM 4 C C4 NAG . . . H 3 -56.368 -27.262 65.859 1 93.29 ? C4 NAG 402 A 1 
HETATM 5 C C5 NAG . . . H 3 -56.401 -26.1 64.873 1 84.68 ? C5 NAG 402 A 1 
HETATM 6 C C6 NAG . . . H 3 -57.61 -25.213 65.062 1 83.01 ? C6 NAG 402 A 1 
HETATM 7 C C7 NAG . . . H 3 -51.654 -27.858 66.58 1 79.73 ? C7 NAG 402 A 1 
HETATM 8 C C8 NAG . . . H 3 -50.441 -28.662 66.218 1 66.8 ? C8 NAG 402 A 1 
HETATM 9 N N2 NAG . . . H 3 -52.626 -27.821 65.664 1 75.85 ? N2 NAG 402 A 1 
HETATM 10 O O3 NAG . . . H 3 -54.985 -29.031 66.731 1 91.28 ? O3 NAG 402 A 1 
HETATM 11 O O4 NAG . . . H 3 -57.472 -28.122 65.598 1 95.29 ? O4 NAG 402 A 1 
HETATM 12 O O5 NAG . . . H 3 -55.248 -25.267 65.062 1 79.84 ? O5 NAG 402 A 1 
HETATM 13 O O6 NAG . . . H 3 -57.58 -24.093 64.19 1 85.72 ? O6 NAG 402 A 1 
HETATM 14 O O7 NAG . . . H 3 -51.747 -27.265 67.651 1 80.82 ? O7 NAG 402 A 1 
#
_model_server_stats.io_time_ms              30 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    31 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#