data_4YY4 # _model_server_result.job_id 76-0UJzkqleq2w7zvXNiPg _model_server_result.datetime_utc '2024-11-14 19:26:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yy4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 4YY4 # _exptl.entry_id 4YY4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YY4 _cell.length_a 35.145 _cell.length_b 68.546 _cell.length_c 105.176 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YY4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 4YY4 _atom_sites.fract_transf_matrix[1][1] 0.028454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014589 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009508 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 201 1 DMS DMS . C 3 HOH A 1 301 95 HOH HOH . C 3 HOH A 2 302 62 HOH HOH . C 3 HOH A 3 303 7 HOH HOH . C 3 HOH A 4 304 82 HOH HOH . C 3 HOH A 5 305 46 HOH HOH . C 3 HOH A 6 306 48 HOH HOH . C 3 HOH A 7 307 9 HOH HOH . C 3 HOH A 8 308 1 HOH HOH . C 3 HOH A 9 309 11 HOH HOH . C 3 HOH A 10 310 2 HOH HOH . C 3 HOH A 11 311 89 HOH HOH . C 3 HOH A 12 312 55 HOH HOH . C 3 HOH A 13 313 6 HOH HOH . C 3 HOH A 14 314 10 HOH HOH . C 3 HOH A 15 315 58 HOH HOH . C 3 HOH A 16 316 27 HOH HOH . C 3 HOH A 17 317 32 HOH HOH . C 3 HOH A 18 318 93 HOH HOH . C 3 HOH A 19 319 26 HOH HOH . C 3 HOH A 20 320 44 HOH HOH . C 3 HOH A 21 321 87 HOH HOH . C 3 HOH A 22 322 96 HOH HOH . C 3 HOH A 23 323 34 HOH HOH . C 3 HOH A 24 324 12 HOH HOH . C 3 HOH A 25 325 92 HOH HOH . C 3 HOH A 26 326 88 HOH HOH . C 3 HOH A 27 327 37 HOH HOH . C 3 HOH A 28 328 65 HOH HOH . C 3 HOH A 29 329 3 HOH HOH . C 3 HOH A 30 330 4 HOH HOH . C 3 HOH A 31 331 45 HOH HOH . C 3 HOH A 32 332 100 HOH HOH . C 3 HOH A 33 333 84 HOH HOH . C 3 HOH A 34 334 64 HOH HOH . C 3 HOH A 35 335 60 HOH HOH . C 3 HOH A 36 336 36 HOH HOH . C 3 HOH A 37 337 21 HOH HOH . C 3 HOH A 38 338 13 HOH HOH . C 3 HOH A 39 339 17 HOH HOH . C 3 HOH A 40 340 28 HOH HOH . C 3 HOH A 41 341 83 HOH HOH . C 3 HOH A 42 342 69 HOH HOH . C 3 HOH A 43 343 76 HOH HOH . C 3 HOH A 44 344 57 HOH HOH . C 3 HOH A 45 345 8 HOH HOH . C 3 HOH A 46 346 16 HOH HOH . C 3 HOH A 47 347 22 HOH HOH . C 3 HOH A 48 348 15 HOH HOH . C 3 HOH A 49 349 61 HOH HOH . C 3 HOH A 50 350 68 HOH HOH . C 3 HOH A 51 351 78 HOH HOH . C 3 HOH A 52 352 29 HOH HOH . C 3 HOH A 53 353 74 HOH HOH . C 3 HOH A 54 354 43 HOH HOH . C 3 HOH A 55 355 20 HOH HOH . C 3 HOH A 56 356 5 HOH HOH . C 3 HOH A 57 357 97 HOH HOH . C 3 HOH A 58 358 77 HOH HOH . C 3 HOH A 59 359 39 HOH HOH . C 3 HOH A 60 360 42 HOH HOH . C 3 HOH A 61 361 23 HOH HOH . C 3 HOH A 62 362 33 HOH HOH . C 3 HOH A 63 363 47 HOH HOH . C 3 HOH A 64 364 14 HOH HOH . C 3 HOH A 65 365 79 HOH HOH . C 3 HOH A 66 366 63 HOH HOH . C 3 HOH A 67 367 35 HOH HOH . C 3 HOH A 68 368 41 HOH HOH . C 3 HOH A 69 369 67 HOH HOH . C 3 HOH A 70 370 70 HOH HOH . C 3 HOH A 71 371 72 HOH HOH . C 3 HOH A 72 372 91 HOH HOH . C 3 HOH A 73 373 56 HOH HOH . C 3 HOH A 74 374 18 HOH HOH . C 3 HOH A 75 375 19 HOH HOH . C 3 HOH A 76 376 73 HOH HOH . C 3 HOH A 77 377 49 HOH HOH . C 3 HOH A 78 378 90 HOH HOH . C 3 HOH A 79 379 85 HOH HOH . C 3 HOH A 80 380 98 HOH HOH . C 3 HOH A 81 381 59 HOH HOH . C 3 HOH A 82 382 94 HOH HOH . C 3 HOH A 83 383 71 HOH HOH . C 3 HOH A 84 384 52 HOH HOH . C 3 HOH A 85 385 38 HOH HOH . C 3 HOH A 86 386 81 HOH HOH . C 3 HOH A 87 387 24 HOH HOH . C 3 HOH A 88 388 75 HOH HOH . C 3 HOH A 89 389 66 HOH HOH . C 3 HOH A 90 390 25 HOH HOH . C 3 HOH A 91 391 53 HOH HOH . C 3 HOH A 92 392 40 HOH HOH . C 3 HOH A 93 393 99 HOH HOH . C 3 HOH A 94 394 50 HOH HOH . C 3 HOH A 95 395 86 HOH HOH . C 3 HOH A 96 396 80 HOH HOH . C 3 HOH A 97 397 31 HOH HOH . C 3 HOH A 98 398 54 HOH HOH . C 3 HOH A 99 399 30 HOH HOH . C 3 HOH A 100 400 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . B 2 -6.281 18.347 4.428 1 32.16 ? S DMS 201 A 1 HETATM 2 O O DMS . . . B 2 -5.263 18.38 5.544 1 27.72 ? O DMS 201 A 1 HETATM 3 C C1 DMS . . . B 2 -7.791 17.68 4.927 1 33.62 ? C1 DMS 201 A 1 HETATM 4 C C2 DMS . . . B 2 -6.634 19.907 3.86 1 41.39 ? C2 DMS 201 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 4 #