data_4YYL # _model_server_result.job_id 6THYdwcXdf2phibkBlXGPQ _model_server_result.datetime_utc '2024-11-20 13:17:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yyl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 4YYL # _exptl.entry_id 4YYL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 278.233 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(4-fluorophenoxy)-1-(2,3,4-trihydroxyphenyl)ethanone _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YYL _cell.length_a 66.766 _cell.length_b 66.766 _cell.length_c 126.251 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YYL _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 46 A HIS 41 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc2 A OE1 GLU 65 A GLU 80 1_555 F MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc3 A OD2 ASP 93 A ASP 108 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc4 A OD1 ASP 93 A ASP 108 1_555 F MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc5 A OE2 GLU 104 A GLU 119 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc6 A O ILE 105 A ILE 120 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 B OAI 4KN . A 4KN 301 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc8 B OAH 4KN . A 4KN 301 1_555 E MN MN . A MN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc9 B OAH 4KN . A 4KN 301 1_555 F MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc10 B OAG 4KN . A 4KN 301 1_555 F MN MN . A MN 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc11 F MN MN . A MN 305 1_555 H O HOH . A HOH 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc12 F MN MN . A MN 305 1_555 H O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? # _chem_comp.formula 'C14 H11 F O5' _chem_comp.formula_weight 278.233 _chem_comp.id 4KN _chem_comp.mon_nstd_flag . _chem_comp.name 2-(4-fluorophenoxy)-1-(2,3,4-trihydroxyphenyl)ethanone _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAG CAD 4KN sing 1 n n OAK CAJ 4KN doub 2 n n OAH CAE 4KN sing 3 n n CAQ CAO 4KN doub 4 n y CAQ CAS 4KN sing 5 n y CAO CAN 4KN sing 6 n y FAT CAS 4KN sing 7 n n CAD CAE 4KN doub 8 n y CAD CAC 4KN sing 9 n y CAS CAR 4KN doub 10 n y CAE CAF 4KN sing 11 n y CAJ CAC 4KN sing 12 n n CAJ CAL 4KN sing 13 n n CAN OAM 4KN sing 14 n n CAN CAP 4KN doub 15 n y OAM CAL 4KN sing 16 n n CAR CAP 4KN sing 17 n y CAC CAB 4KN doub 18 n y CAF OAI 4KN sing 19 n n CAF CAA 4KN doub 20 n y CAB CAA 4KN sing 21 n y CAO H1 4KN sing 22 n n CAQ H2 4KN sing 23 n n CAR H3 4KN sing 24 n n CAP H4 4KN sing 25 n n CAL H5 4KN sing 26 n n CAL H6 4KN sing 27 n n CAB H7 4KN sing 28 n n CAA H8 4KN sing 29 n n OAI H9 4KN sing 30 n n OAH H10 4KN sing 31 n n OAG H11 4KN sing 32 n n # _atom_sites.entry_id 4YYL _atom_sites.fract_transf_matrix[1][1] 0.014978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007921 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 4KN A 1 301 1 4KN DRG . C 2 4KN A 1 302 2 4KN DRG . D 2 4KN A 1 303 3 4KN DRG . E 3 MN A 1 304 1 MN MN . F 3 MN A 1 305 2 MN MN . G 4 SO4 A 1 306 1 SO4 SO4 . H 5 HOH A 1 401 111 HOH HOH . H 5 HOH A 2 402 154 HOH HOH . H 5 HOH A 3 403 57 HOH HOH . H 5 HOH A 4 404 144 HOH HOH . H 5 HOH A 5 405 113 HOH HOH . H 5 HOH A 6 406 115 HOH HOH . H 5 HOH A 7 407 68 HOH HOH . H 5 HOH A 8 408 71 HOH HOH . H 5 HOH A 9 409 95 HOH HOH . H 5 HOH A 10 410 92 HOH HOH . H 5 HOH A 11 411 5 HOH HOH . H 5 HOH A 12 412 136 HOH HOH . H 5 HOH A 13 413 140 HOH HOH . H 5 HOH A 14 414 82 HOH HOH . H 5 HOH A 15 415 22 HOH HOH . H 5 HOH A 16 416 153 HOH HOH . H 5 HOH A 17 417 1 HOH HOH . H 5 HOH A 18 418 35 HOH HOH . H 5 HOH A 19 419 23 HOH HOH . H 5 HOH A 20 420 62 HOH HOH . H 5 HOH A 21 421 157 HOH HOH . H 5 HOH A 22 422 146 HOH HOH . H 5 HOH A 23 423 10 HOH HOH . H 5 HOH A 24 424 155 HOH HOH . H 5 HOH A 25 425 34 HOH HOH . H 5 HOH A 26 426 141 HOH HOH . H 5 HOH A 27 427 32 HOH HOH . H 5 HOH A 28 428 64 HOH HOH . H 5 HOH A 29 429 63 HOH HOH . H 5 HOH A 30 430 109 HOH HOH . H 5 HOH A 31 431 73 HOH HOH . H 5 HOH A 32 432 24 HOH HOH . H 5 HOH A 33 433 84 HOH HOH . H 5 HOH A 34 434 39 HOH HOH . H 5 HOH A 35 435 53 HOH HOH . H 5 HOH A 36 436 36 HOH HOH . H 5 HOH A 37 437 158 HOH HOH . H 5 HOH A 38 438 40 HOH HOH . H 5 HOH A 39 439 18 HOH HOH . H 5 HOH A 40 440 90 HOH HOH . H 5 HOH A 41 441 42 HOH HOH . H 5 HOH A 42 442 9 HOH HOH . H 5 HOH A 43 443 37 HOH HOH . H 5 HOH A 44 444 103 HOH HOH . H 5 HOH A 45 445 29 HOH HOH . H 5 HOH A 46 446 98 HOH HOH . H 5 HOH A 47 447 8 HOH HOH . H 5 HOH A 48 448 86 HOH HOH . H 5 HOH A 49 449 31 HOH HOH . H 5 HOH A 50 450 28 HOH HOH . H 5 HOH A 51 451 12 HOH HOH . H 5 HOH A 52 452 26 HOH HOH . H 5 HOH A 53 453 45 HOH HOH . H 5 HOH A 54 454 54 HOH HOH . H 5 HOH A 55 455 30 HOH HOH . H 5 HOH A 56 456 72 HOH HOH . H 5 HOH A 57 457 94 HOH HOH . H 5 HOH A 58 458 2 HOH HOH . H 5 HOH A 59 459 79 HOH HOH . H 5 HOH A 60 460 106 HOH HOH . H 5 HOH A 61 461 51 HOH HOH . H 5 HOH A 62 462 143 HOH HOH . H 5 HOH A 63 463 65 HOH HOH . H 5 HOH A 64 464 60 HOH HOH . H 5 HOH A 65 465 25 HOH HOH . H 5 HOH A 66 466 120 HOH HOH . H 5 HOH A 67 467 15 HOH HOH . H 5 HOH A 68 468 167 HOH HOH . H 5 HOH A 69 469 20 HOH HOH . H 5 HOH A 70 470 58 HOH HOH . H 5 HOH A 71 471 105 HOH HOH . H 5 HOH A 72 472 33 HOH HOH . H 5 HOH A 73 473 77 HOH HOH . H 5 HOH A 74 474 100 HOH HOH . H 5 HOH A 75 475 80 HOH HOH . H 5 HOH A 76 476 152 HOH HOH . H 5 HOH A 77 477 142 HOH HOH . H 5 HOH A 78 478 27 HOH HOH . H 5 HOH A 79 479 61 HOH HOH . H 5 HOH A 80 480 88 HOH HOH . H 5 HOH A 81 481 116 HOH HOH . H 5 HOH A 82 482 16 HOH HOH . H 5 HOH A 83 483 3 HOH HOH . H 5 HOH A 84 484 74 HOH HOH . H 5 HOH A 85 485 4 HOH HOH . H 5 HOH A 86 486 99 HOH HOH . H 5 HOH A 87 487 70 HOH HOH . H 5 HOH A 88 488 19 HOH HOH . H 5 HOH A 89 489 75 HOH HOH . H 5 HOH A 90 490 81 HOH HOH . H 5 HOH A 91 491 76 HOH HOH . H 5 HOH A 92 492 123 HOH HOH . H 5 HOH A 93 493 46 HOH HOH . H 5 HOH A 94 494 21 HOH HOH . H 5 HOH A 95 495 38 HOH HOH . H 5 HOH A 96 496 85 HOH HOH . H 5 HOH A 97 497 108 HOH HOH . H 5 HOH A 98 498 41 HOH HOH . H 5 HOH A 99 499 55 HOH HOH . H 5 HOH A 100 500 14 HOH HOH . H 5 HOH A 101 501 165 HOH HOH . H 5 HOH A 102 502 128 HOH HOH . H 5 HOH A 103 503 52 HOH HOH . H 5 HOH A 104 504 66 HOH HOH . H 5 HOH A 105 505 119 HOH HOH . H 5 HOH A 106 506 6 HOH HOH . H 5 HOH A 107 507 129 HOH HOH . H 5 HOH A 108 508 7 HOH HOH . H 5 HOH A 109 509 137 HOH HOH . H 5 HOH A 110 510 161 HOH HOH . H 5 HOH A 111 511 127 HOH HOH . H 5 HOH A 112 512 83 HOH HOH . H 5 HOH A 113 513 96 HOH HOH . H 5 HOH A 114 514 47 HOH HOH . H 5 HOH A 115 515 17 HOH HOH . H 5 HOH A 116 516 87 HOH HOH . H 5 HOH A 117 517 59 HOH HOH . H 5 HOH A 118 518 160 HOH HOH . H 5 HOH A 119 519 89 HOH HOH . H 5 HOH A 120 520 97 HOH HOH . H 5 HOH A 121 521 133 HOH HOH . H 5 HOH A 122 522 131 HOH HOH . H 5 HOH A 123 523 11 HOH HOH . H 5 HOH A 124 524 122 HOH HOH . H 5 HOH A 125 525 169 HOH HOH . H 5 HOH A 126 526 67 HOH HOH . H 5 HOH A 127 527 162 HOH HOH . H 5 HOH A 128 528 138 HOH HOH . H 5 HOH A 129 529 114 HOH HOH . H 5 HOH A 130 530 117 HOH HOH . H 5 HOH A 131 531 69 HOH HOH . H 5 HOH A 132 532 134 HOH HOH . H 5 HOH A 133 533 149 HOH HOH . H 5 HOH A 134 534 132 HOH HOH . H 5 HOH A 135 535 13 HOH HOH . H 5 HOH A 136 536 104 HOH HOH . H 5 HOH A 137 537 150 HOH HOH . H 5 HOH A 138 538 121 HOH HOH . H 5 HOH A 139 539 78 HOH HOH . H 5 HOH A 140 540 43 HOH HOH . H 5 HOH A 141 541 49 HOH HOH . H 5 HOH A 142 542 164 HOH HOH . H 5 HOH A 143 543 93 HOH HOH . H 5 HOH A 144 544 91 HOH HOH . H 5 HOH A 145 545 168 HOH HOH . H 5 HOH A 146 546 151 HOH HOH . H 5 HOH A 147 547 125 HOH HOH . H 5 HOH A 148 548 107 HOH HOH . H 5 HOH A 149 549 163 HOH HOH . H 5 HOH A 150 550 124 HOH HOH . H 5 HOH A 151 551 166 HOH HOH . H 5 HOH A 152 552 159 HOH HOH . H 5 HOH A 153 553 130 HOH HOH . H 5 HOH A 154 554 118 HOH HOH . H 5 HOH A 155 555 102 HOH HOH . H 5 HOH A 156 556 44 HOH HOH . H 5 HOH A 157 557 156 HOH HOH . H 5 HOH A 158 558 145 HOH HOH . H 5 HOH A 159 559 170 HOH HOH . H 5 HOH A 160 560 48 HOH HOH . H 5 HOH A 161 561 50 HOH HOH . H 5 HOH A 162 562 148 HOH HOH . H 5 HOH A 163 563 139 HOH HOH . H 5 HOH A 164 564 135 HOH HOH . H 5 HOH A 165 565 147 HOH HOH . H 5 HOH A 166 566 126 HOH HOH . H 5 HOH A 167 567 56 HOH HOH . H 5 HOH A 168 568 110 HOH HOH . H 5 HOH A 169 569 101 HOH HOH . H 5 HOH A 170 570 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAO 4KN . . . C 2 -28.557 3.018 15.432 1 77.06 ? CAO 4KN 302 A 1 HETATM 2 C CAQ 4KN . . . C 2 -28.553 4.376 15.775 1 75.13 ? CAQ 4KN 302 A 1 HETATM 3 C CAS 4KN . . . C 2 -29.076 5.306 14.873 1 67.58 ? CAS 4KN 302 A 1 HETATM 4 F FAT 4KN . . . C 2 -29.108 6.674 15.162 1 85.04 ? FAT 4KN 302 A 1 HETATM 5 C CAR 4KN . . . C 2 -29.568 4.857 13.664 1 72.67 ? CAR 4KN 302 A 1 HETATM 6 C CAP 4KN . . . C 2 -29.552 3.508 13.325 1 70.97 ? CAP 4KN 302 A 1 HETATM 7 C CAN 4KN . . . C 2 -29.02 2.569 14.189 1 68.99 ? CAN 4KN 302 A 1 HETATM 8 O OAM 4KN . . . C 2 -29.059 1.242 13.81 1 63.48 ? OAM 4KN 302 A 1 HETATM 9 C CAL 4KN . . . C 2 -28.582 0.258 14.764 1 54.28 ? CAL 4KN 302 A 1 HETATM 10 C CAJ 4KN . . . C 2 -27.08 0.321 15.142 1 54.55 ? CAJ 4KN 302 A 1 HETATM 11 O OAK 4KN . . . C 2 -26.278 1.032 14.543 1 58.7 ? OAK 4KN 302 A 1 HETATM 12 C CAC 4KN . . . C 2 -26.678 -0.635 16.075 1 52.14 ? CAC 4KN 302 A 1 HETATM 13 C CAB 4KN . . . C 2 -27.626 -1.524 16.491 1 57 ? CAB 4KN 302 A 1 HETATM 14 C CAA 4KN . . . C 2 -27.353 -2.56 17.389 1 59.73 ? CAA 4KN 302 A 1 HETATM 15 C CAF 4KN . . . C 2 -26.126 -2.773 17.897 1 48.47 ? CAF 4KN 302 A 1 HETATM 16 O OAI 4KN . . . C 2 -25.926 -3.791 18.766 1 58.01 ? OAI 4KN 302 A 1 HETATM 17 C CAE 4KN . . . C 2 -25.12 -1.892 17.494 1 36.95 ? CAE 4KN 302 A 1 HETATM 18 O OAH 4KN . . . C 2 -23.857 -2.056 17.957 1 55.75 ? OAH 4KN 302 A 1 HETATM 19 C CAD 4KN . . . C 2 -25.403 -0.833 16.588 1 45.4 ? CAD 4KN 302 A 1 HETATM 20 O OAG 4KN . . . C 2 -24.434 0.009 16.18 1 56.72 ? OAG 4KN 302 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #