data_4YYM # _model_server_result.job_id hAwsdoSt3KVpoV8WYrrK1w _model_server_result.datetime_utc '2024-11-25 00:29:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1701}' # _entry.id 4YYM # _exptl.entry_id 4YYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YYM _cell.length_a 58.215 _cell.length_b 66.048 _cell.length_c 81.021 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C BTK 5 Z BTK 5 1_555 C N GLY 6 Z GLY 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 C C GLY 7 Z GLY 7 1_555 C N BTK 8 Z BTK 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 C C BTK 8 Z BTK 8 1_555 C N GLY 9 Z GLY 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? metalc ? metalc1 A OE1 GLU 92 A GLU 1586 1_555 D CA CA . A CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc2 A OE2 GLU 92 A GLU 1586 1_555 D CA CA . A CA 1701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? metalc ? metalc3 D CA CA . A CA 1701 1_555 E O HOH . A HOH 1830 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc4 D CA CA . A CA 1701 2_464 B OD1 ASN 19 B ASN 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc5 D CA CA . A CA 1701 1_555 F O HOH . B HOH 1726 2_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? metalc ? metalc6 D CA CA . A CA 1701 1_555 F O HOH . B HOH 1731 2_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc7 D CA CA . A CA 1701 1_555 F O HOH . B HOH 1749 2_465 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 4YYM _atom_sites.fract_transf_matrix[1][1] 0.017178 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015141 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 CA A 1 1701 1 CA CA . E 4 HOH A 1 1801 47 HOH HOH . E 4 HOH A 2 1802 144 HOH HOH . E 4 HOH A 3 1803 189 HOH HOH . E 4 HOH A 4 1804 73 HOH HOH . E 4 HOH A 5 1805 118 HOH HOH . E 4 HOH A 6 1806 147 HOH HOH . E 4 HOH A 7 1807 2 HOH HOH . E 4 HOH A 8 1808 78 HOH HOH . E 4 HOH A 9 1809 92 HOH HOH . E 4 HOH A 10 1810 20 HOH HOH . E 4 HOH A 11 1811 7 HOH HOH . E 4 HOH A 12 1812 191 HOH HOH . E 4 HOH A 13 1813 160 HOH HOH . E 4 HOH A 14 1814 63 HOH HOH . E 4 HOH A 15 1815 196 HOH HOH . E 4 HOH A 16 1816 22 HOH HOH . E 4 HOH A 17 1817 122 HOH HOH . E 4 HOH A 18 1818 65 HOH HOH . E 4 HOH A 19 1819 41 HOH HOH . E 4 HOH A 20 1820 97 HOH HOH . E 4 HOH A 21 1821 60 HOH HOH . E 4 HOH A 22 1822 194 HOH HOH . E 4 HOH A 23 1823 30 HOH HOH . E 4 HOH A 24 1824 5 HOH HOH . E 4 HOH A 25 1825 143 HOH HOH . E 4 HOH A 26 1826 55 HOH HOH . E 4 HOH A 27 1827 68 HOH HOH . E 4 HOH A 28 1828 168 HOH HOH . E 4 HOH A 29 1829 169 HOH HOH . E 4 HOH A 30 1830 33 HOH HOH . E 4 HOH A 31 1831 48 HOH HOH . E 4 HOH A 32 1832 113 HOH HOH . E 4 HOH A 33 1833 62 HOH HOH . E 4 HOH A 34 1834 197 HOH HOH . E 4 HOH A 35 1835 95 HOH HOH . E 4 HOH A 36 1836 10 HOH HOH . E 4 HOH A 37 1837 26 HOH HOH . E 4 HOH A 38 1838 82 HOH HOH . E 4 HOH A 39 1839 27 HOH HOH . E 4 HOH A 40 1840 54 HOH HOH . E 4 HOH A 41 1841 135 HOH HOH . E 4 HOH A 42 1842 114 HOH HOH . E 4 HOH A 43 1843 149 HOH HOH . E 4 HOH A 44 1844 39 HOH HOH . E 4 HOH A 45 1845 40 HOH HOH . E 4 HOH A 46 1846 71 HOH HOH . E 4 HOH A 47 1847 4 HOH HOH . E 4 HOH A 48 1848 162 HOH HOH . E 4 HOH A 49 1849 103 HOH HOH . E 4 HOH A 50 1850 91 HOH HOH . E 4 HOH A 51 1851 14 HOH HOH . E 4 HOH A 52 1852 101 HOH HOH . E 4 HOH A 53 1853 171 HOH HOH . E 4 HOH A 54 1854 117 HOH HOH . E 4 HOH A 55 1855 184 HOH HOH . E 4 HOH A 56 1856 16 HOH HOH . E 4 HOH A 57 1857 166 HOH HOH . E 4 HOH A 58 1858 37 HOH HOH . E 4 HOH A 59 1859 134 HOH HOH . E 4 HOH A 60 1860 8 HOH HOH . E 4 HOH A 61 1861 119 HOH HOH . E 4 HOH A 62 1862 180 HOH HOH . E 4 HOH A 63 1863 1 HOH HOH . E 4 HOH A 64 1864 23 HOH HOH . E 4 HOH A 65 1865 123 HOH HOH . E 4 HOH A 66 1866 172 HOH HOH . E 4 HOH A 67 1867 45 HOH HOH . E 4 HOH A 68 1868 21 HOH HOH . E 4 HOH A 69 1869 185 HOH HOH . E 4 HOH A 70 1870 50 HOH HOH . E 4 HOH A 71 1871 74 HOH HOH . E 4 HOH A 72 1872 17 HOH HOH . E 4 HOH A 73 1873 107 HOH HOH . E 4 HOH A 74 1874 132 HOH HOH . E 4 HOH A 75 1875 93 HOH HOH . E 4 HOH A 76 1876 139 HOH HOH . E 4 HOH A 77 1877 186 HOH HOH . E 4 HOH A 78 1878 80 HOH HOH . E 4 HOH A 79 1879 9 HOH HOH . E 4 HOH A 80 1880 140 HOH HOH . E 4 HOH A 81 1881 115 HOH HOH . E 4 HOH A 82 1882 167 HOH HOH . E 4 HOH A 83 1883 36 HOH HOH . E 4 HOH A 84 1884 58 HOH HOH . E 4 HOH A 85 1885 170 HOH HOH . E 4 HOH A 86 1886 136 HOH HOH . E 4 HOH A 87 1887 104 HOH HOH . E 4 HOH A 88 1888 183 HOH HOH . E 4 HOH A 89 1889 193 HOH HOH . E 4 HOH A 90 1890 24 HOH HOH . E 4 HOH A 91 1891 155 HOH HOH . E 4 HOH A 92 1892 32 HOH HOH . E 4 HOH A 93 1893 98 HOH HOH . E 4 HOH A 94 1894 110 HOH HOH . E 4 HOH A 95 1895 106 HOH HOH . E 4 HOH A 96 1896 81 HOH HOH . E 4 HOH A 97 1897 138 HOH HOH . E 4 HOH A 98 1898 72 HOH HOH . E 4 HOH A 99 1899 35 HOH HOH . E 4 HOH A 100 1900 64 HOH HOH . E 4 HOH A 101 1901 182 HOH HOH . E 4 HOH A 102 1902 141 HOH HOH . E 4 HOH A 103 1903 137 HOH HOH . E 4 HOH A 104 1904 105 HOH HOH . E 4 HOH A 105 1905 112 HOH HOH . F 4 HOH B 1 1701 83 HOH HOH . F 4 HOH B 2 1702 146 HOH HOH . F 4 HOH B 3 1703 129 HOH HOH . F 4 HOH B 4 1704 133 HOH HOH . F 4 HOH B 5 1705 157 HOH HOH . F 4 HOH B 6 1706 59 HOH HOH . F 4 HOH B 7 1707 187 HOH HOH . F 4 HOH B 8 1708 102 HOH HOH . F 4 HOH B 9 1709 161 HOH HOH . F 4 HOH B 10 1710 126 HOH HOH . F 4 HOH B 11 1711 116 HOH HOH . F 4 HOH B 12 1712 84 HOH HOH . F 4 HOH B 13 1713 176 HOH HOH . F 4 HOH B 14 1714 151 HOH HOH . F 4 HOH B 15 1715 43 HOH HOH . F 4 HOH B 16 1716 76 HOH HOH . F 4 HOH B 17 1717 38 HOH HOH . F 4 HOH B 18 1718 153 HOH HOH . F 4 HOH B 19 1719 125 HOH HOH . F 4 HOH B 20 1720 109 HOH HOH . F 4 HOH B 21 1721 174 HOH HOH . F 4 HOH B 22 1722 120 HOH HOH . F 4 HOH B 23 1723 12 HOH HOH . F 4 HOH B 24 1724 100 HOH HOH . F 4 HOH B 25 1725 49 HOH HOH . F 4 HOH B 26 1726 11 HOH HOH . F 4 HOH B 27 1727 13 HOH HOH . F 4 HOH B 28 1728 148 HOH HOH . F 4 HOH B 29 1729 199 HOH HOH . F 4 HOH B 30 1730 66 HOH HOH . F 4 HOH B 31 1731 15 HOH HOH . F 4 HOH B 32 1732 6 HOH HOH . F 4 HOH B 33 1733 179 HOH HOH . F 4 HOH B 34 1734 198 HOH HOH . F 4 HOH B 35 1735 124 HOH HOH . F 4 HOH B 36 1736 181 HOH HOH . F 4 HOH B 37 1737 99 HOH HOH . F 4 HOH B 38 1738 69 HOH HOH . F 4 HOH B 39 1739 52 HOH HOH . F 4 HOH B 40 1740 89 HOH HOH . F 4 HOH B 41 1741 44 HOH HOH . F 4 HOH B 42 1742 94 HOH HOH . F 4 HOH B 43 1743 128 HOH HOH . F 4 HOH B 44 1744 34 HOH HOH . F 4 HOH B 45 1745 46 HOH HOH . F 4 HOH B 46 1746 3 HOH HOH . F 4 HOH B 47 1747 164 HOH HOH . F 4 HOH B 48 1748 90 HOH HOH . F 4 HOH B 49 1749 53 HOH HOH . F 4 HOH B 50 1750 28 HOH HOH . F 4 HOH B 51 1751 61 HOH HOH . F 4 HOH B 52 1752 29 HOH HOH . F 4 HOH B 53 1753 131 HOH HOH . F 4 HOH B 54 1754 165 HOH HOH . F 4 HOH B 55 1755 178 HOH HOH . F 4 HOH B 56 1756 51 HOH HOH . F 4 HOH B 57 1757 77 HOH HOH . F 4 HOH B 58 1758 127 HOH HOH . F 4 HOH B 59 1759 188 HOH HOH . F 4 HOH B 60 1760 163 HOH HOH . F 4 HOH B 61 1761 25 HOH HOH . F 4 HOH B 62 1762 192 HOH HOH . F 4 HOH B 63 1763 85 HOH HOH . F 4 HOH B 64 1764 67 HOH HOH . F 4 HOH B 65 1765 57 HOH HOH . F 4 HOH B 66 1766 142 HOH HOH . F 4 HOH B 67 1767 79 HOH HOH . F 4 HOH B 68 1768 150 HOH HOH . F 4 HOH B 69 1769 173 HOH HOH . F 4 HOH B 70 1770 18 HOH HOH . F 4 HOH B 71 1771 70 HOH HOH . F 4 HOH B 72 1772 88 HOH HOH . F 4 HOH B 73 1773 159 HOH HOH . F 4 HOH B 74 1774 108 HOH HOH . F 4 HOH B 75 1775 156 HOH HOH . F 4 HOH B 76 1776 75 HOH HOH . F 4 HOH B 77 1777 31 HOH HOH . F 4 HOH B 78 1778 130 HOH HOH . F 4 HOH B 79 1779 56 HOH HOH . F 4 HOH B 80 1780 111 HOH HOH . F 4 HOH B 81 1781 96 HOH HOH . F 4 HOH B 82 1782 190 HOH HOH . F 4 HOH B 83 1783 42 HOH HOH . F 4 HOH B 84 1784 158 HOH HOH . F 4 HOH B 85 1785 177 HOH HOH . F 4 HOH B 86 1786 19 HOH HOH . F 4 HOH B 87 1787 175 HOH HOH . F 4 HOH B 88 1788 152 HOH HOH . F 4 HOH B 89 1789 87 HOH HOH . G 4 HOH Z 1 101 195 HOH HOH . G 4 HOH Z 2 102 154 HOH HOH . G 4 HOH Z 3 103 86 HOH HOH . G 4 HOH Z 4 104 121 HOH HOH . G 4 HOH Z 5 105 145 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -12.033 _atom_site.Cartn_y 26.093 _atom_site.Cartn_z 18.877 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 1701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #