data_4YYY # _model_server_result.job_id UdpD2MYkt2hVvgFHCRQTsA _model_server_result.datetime_utc '2025-01-10 16:10:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 4YYY # _exptl.entry_id 4YYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YYY _cell.length_a 193.933 _cell.length_b 193.933 _cell.length_c 57.73 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,F,G,H,J 1 1 A,C,D,E,I 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -57.73 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 H N N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 4YYY _atom_sites.fract_transf_matrix[1][1] 0.005156 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005156 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017322 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 501 1 CIT CIT . D 2 CIT A 1 502 3 CIT CIT . E 3 PGE A 1 503 1 PGE PGE . F 4 URI B 1 501 1 URI URI . G 4 URI B 1 502 2 URI URI . H 2 CIT B 1 503 2 CIT CIT . I 5 HOH A 1 601 68 HOH HOH . I 5 HOH A 2 602 55 HOH HOH . I 5 HOH A 3 603 5 HOH HOH . I 5 HOH A 4 604 17 HOH HOH . I 5 HOH A 5 605 70 HOH HOH . I 5 HOH A 6 606 9 HOH HOH . I 5 HOH A 7 607 7 HOH HOH . I 5 HOH A 8 608 10 HOH HOH . I 5 HOH A 9 609 24 HOH HOH . I 5 HOH A 10 610 4 HOH HOH . I 5 HOH A 11 611 15 HOH HOH . I 5 HOH A 12 612 43 HOH HOH . I 5 HOH A 13 613 12 HOH HOH . I 5 HOH A 14 614 64 HOH HOH . I 5 HOH A 15 615 39 HOH HOH . I 5 HOH A 16 616 58 HOH HOH . I 5 HOH A 17 617 38 HOH HOH . I 5 HOH A 18 618 20 HOH HOH . I 5 HOH A 19 619 28 HOH HOH . I 5 HOH A 20 620 37 HOH HOH . I 5 HOH A 21 621 36 HOH HOH . I 5 HOH A 22 622 22 HOH HOH . I 5 HOH A 23 623 72 HOH HOH . I 5 HOH A 24 624 26 HOH HOH . I 5 HOH A 25 625 62 HOH HOH . I 5 HOH A 26 626 21 HOH HOH . I 5 HOH A 27 627 25 HOH HOH . I 5 HOH A 28 628 27 HOH HOH . I 5 HOH A 29 629 71 HOH HOH . J 5 HOH B 1 601 14 HOH HOH . J 5 HOH B 2 602 46 HOH HOH . J 5 HOH B 3 603 32 HOH HOH . J 5 HOH B 4 604 66 HOH HOH . J 5 HOH B 5 605 11 HOH HOH . J 5 HOH B 6 606 6 HOH HOH . J 5 HOH B 7 607 19 HOH HOH . J 5 HOH B 8 608 63 HOH HOH . J 5 HOH B 9 609 42 HOH HOH . J 5 HOH B 10 610 47 HOH HOH . J 5 HOH B 11 611 35 HOH HOH . J 5 HOH B 12 612 44 HOH HOH . J 5 HOH B 13 613 34 HOH HOH . J 5 HOH B 14 614 13 HOH HOH . J 5 HOH B 15 615 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . H 2 5.044 -63.191 -12.517 0.92 82.54 ? C1 CIT 503 B 1 HETATM 2 O O1 CIT . . . H 2 5.026 -63.882 -13.554 0.92 83.86 ? O1 CIT 503 B 1 HETATM 3 O O2 CIT . . . H 2 4.765 -63.759 -11.428 0.92 81.91 ? O2 CIT 503 B 1 HETATM 4 C C2 CIT . . . H 2 5.368 -61.708 -12.578 0.92 82.61 ? C2 CIT 503 B 1 HETATM 5 C C3 CIT . . . H 2 5.814 -61.242 -11.192 0.92 84.06 ? C3 CIT 503 B 1 HETATM 6 O O7 CIT . . . H 2 4.712 -61.393 -10.247 0.92 80.08 ? O7 CIT 503 B 1 HETATM 7 C C4 CIT . . . H 2 7.012 -62.032 -10.701 0.92 85.21 ? C4 CIT 503 B 1 HETATM 8 C C5 CIT . . . H 2 6.918 -61.885 -9.217 0.92 77.58 ? C5 CIT 503 B 1 HETATM 9 O O3 CIT . . . H 2 5.827 -62.069 -8.633 0.92 73.51 ? O3 CIT 503 B 1 HETATM 10 O O4 CIT . . . H 2 7.932 -61.526 -8.596 0.92 79.12 ? O4 CIT 503 B 1 HETATM 11 C C6 CIT . . . H 2 6.281 -59.797 -11.146 0.92 85 ? C6 CIT 503 B 1 HETATM 12 O O5 CIT . . . H 2 6.91 -59.277 -12.103 0.92 79.26 ? O5 CIT 503 B 1 HETATM 13 O O6 CIT . . . H 2 6.039 -59.137 -10.1 0.92 85.22 ? O6 CIT 503 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 445 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 13 #