data_4YYZ
#
_model_server_result.job_id            ZMIxwUJ8QwdakT-7_sDTdw 
_model_server_result.datetime_utc      '2024-12-22 01:22:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yyz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    4YYZ 
#
_exptl.entry_id    4YYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              743.405 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            4YYZ 
_cell.length_a            107.788 
_cell.length_b            107.788 
_cell.length_c            136.02 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C21 H28 N7 O17 P3' 
_chem_comp.formula_weight    743.405 
_chem_comp.id                NAP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAP doub 288 n n 
PA O2A NAP sing 289 n n 
PA O5B NAP sing 290 n n 
PA O3 NAP sing 291 n n 
O2A HOA2 NAP sing 292 n n 
O5B C5B NAP sing 293 n n 
C5B C4B NAP sing 294 n n 
C5B H51A NAP sing 295 n n 
C5B H52A NAP sing 296 n n 
C4B O4B NAP sing 297 n n 
C4B C3B NAP sing 298 n n 
C4B H4B NAP sing 299 n n 
O4B C1B NAP sing 300 n n 
C3B O3B NAP sing 301 n n 
C3B C2B NAP sing 302 n n 
C3B H3B NAP sing 303 n n 
O3B HO3A NAP sing 304 n n 
C2B O2B NAP sing 305 n n 
C2B C1B NAP sing 306 n n 
C2B H2B NAP sing 307 n n 
O2B P2B NAP sing 308 n n 
C1B N9A NAP sing 309 n n 
C1B H1B NAP sing 310 n n 
N9A C8A NAP sing 311 n y 
N9A C4A NAP sing 312 n y 
C8A N7A NAP doub 313 n y 
C8A H8A NAP sing 314 n n 
N7A C5A NAP sing 315 n y 
C5A C6A NAP sing 316 n y 
C5A C4A NAP doub 317 n y 
C6A N6A NAP sing 318 n n 
C6A N1A NAP doub 319 n y 
N6A H61A NAP sing 320 n n 
N6A H62A NAP sing 321 n n 
N1A C2A NAP sing 322 n y 
C2A N3A NAP doub 323 n y 
C2A H2A NAP sing 324 n n 
N3A C4A NAP sing 325 n y 
O3 PN NAP sing 326 n n 
PN O1N NAP doub 327 n n 
PN O2N NAP sing 328 n n 
PN O5D NAP sing 329 n n 
O5D C5D NAP sing 330 n n 
C5D C4D NAP sing 331 n n 
C5D H51N NAP sing 332 n n 
C5D H52N NAP sing 333 n n 
C4D O4D NAP sing 334 n n 
C4D C3D NAP sing 335 n n 
C4D H4D NAP sing 336 n n 
O4D C1D NAP sing 337 n n 
C3D O3D NAP sing 338 n n 
C3D C2D NAP sing 339 n n 
C3D H3D NAP sing 340 n n 
O3D HO3N NAP sing 341 n n 
C2D O2D NAP sing 342 n n 
C2D C1D NAP sing 343 n n 
C2D H2D NAP sing 344 n n 
O2D HO2N NAP sing 345 n n 
C1D N1N NAP sing 346 n n 
C1D H1D NAP sing 347 n n 
N1N C2N NAP sing 348 n y 
N1N C6N NAP doub 349 n y 
C2N C3N NAP doub 350 n y 
C2N H2N NAP sing 351 n n 
C3N C7N NAP sing 352 n n 
C3N C4N NAP sing 353 n y 
C7N O7N NAP doub 354 n n 
C7N N7N NAP sing 355 n n 
N7N H71N NAP sing 356 n n 
N7N H72N NAP sing 357 n n 
C4N C5N NAP doub 358 n y 
C4N H4N NAP sing 359 n n 
C5N C6N NAP sing 360 n y 
C5N H5N NAP sing 361 n n 
C6N H6N NAP sing 362 n n 
P2B O1X NAP doub 363 n n 
P2B O2X NAP sing 364 n n 
P2B O3X NAP sing 365 n n 
O2X HOP2 NAP sing 366 n n 
O3X HOP3 NAP sing 367 n n 
#
_atom_sites.entry_id                     4YYZ 
_atom_sites.fract_transf_matrix[1][1]    0.009277 
_atom_sites.fract_transf_matrix[1][2]    0.005356 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010713 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007352 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAP A 1 301 1 NAP NAP . 
D 3 4JX A 1 302 1 4JX INH . 
E 2 NAP B 1 301 1 NAP NAP . 
F 3 4JX B 1 302 1 4JX INH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAP . . . C 2 57.352 -37.981 28.082 1 130.83 ? PA NAP 301 A 1 
HETATM 2 O O1A NAP . . . C 2 58.328 -38.052 29.186 1 130.27 ? O1A NAP 301 A 1 
HETATM 3 O O2A NAP . . . C 2 56.655 -36.582 27.893 1 127.55 ? O2A NAP 301 A 1 
HETATM 4 O O5B NAP . . . C 2 58.147 -38.426 26.771 1 133.86 ? O5B NAP 301 A 1 
HETATM 5 C C5B NAP . . . C 2 58.341 -37.649 25.569 1 135.15 ? C5B NAP 301 A 1 
HETATM 6 C C4B NAP . . . C 2 59.224 -38.503 24.693 1 133.5 ? C4B NAP 301 A 1 
HETATM 7 O O4B NAP . . . C 2 59.353 -37.889 23.389 1 131.86 ? O4B NAP 301 A 1 
HETATM 8 C C3B NAP . . . C 2 60.646 -38.689 25.229 1 130.6 ? C3B NAP 301 A 1 
HETATM 9 O O3B NAP . . . C 2 61.272 -39.923 24.896 1 121.65 ? O3B NAP 301 A 1 
HETATM 10 C C2B NAP . . . C 2 61.319 -37.48 24.594 1 136.26 ? C2B NAP 301 A 1 
HETATM 11 O O2B NAP . . . C 2 62.75 -37.643 24.537 1 143.17 ? O2B NAP 301 A 1 
HETATM 12 C C1B NAP . . . C 2 60.677 -37.436 23.208 1 130.83 ? C1B NAP 301 A 1 
HETATM 13 N N9A NAP . . . C 2 60.639 -36.118 22.575 1 124.08 ? N9A NAP 301 A 1 
HETATM 14 C C8A NAP . . . C 2 60.34 -34.914 23.162 1 120.46 ? C8A NAP 301 A 1 
HETATM 15 N N7A NAP . . . C 2 60.421 -33.887 22.348 1 118.69 ? N7A NAP 301 A 1 
HETATM 16 C C5A NAP . . . C 2 60.788 -34.457 21.136 1 116.93 ? C5A NAP 301 A 1 
HETATM 17 C C6A NAP . . . C 2 61.016 -33.906 19.858 1 113.35 ? C6A NAP 301 A 1 
HETATM 18 N N6A NAP . . . C 2 60.767 -32.628 19.546 1 112.64 ? N6A NAP 301 A 1 
HETATM 19 N N1A NAP . . . C 2 61.428 -34.747 18.877 1 112.33 ? N1A NAP 301 A 1 
HETATM 20 C C2A NAP . . . C 2 61.568 -36.051 19.156 1 113.27 ? C2A NAP 301 A 1 
HETATM 21 N N3A NAP . . . C 2 61.328 -36.693 20.305 1 115.37 ? N3A NAP 301 A 1 
HETATM 22 C C4A NAP . . . C 2 60.94 -35.83 21.265 1 119.25 ? C4A NAP 301 A 1 
HETATM 23 O O3 NAP . . . C 2 56.308 -39.197 28.042 1 130.42 ? O3 NAP 301 A 1 
HETATM 24 P PN NAP . . . C 2 54.735 -39.262 28.339 1 124.24 ? PN NAP 301 A 1 
HETATM 25 O O1N NAP . . . C 2 54.3 -37.919 28.805 1 119.31 ? O1N NAP 301 A 1 
HETATM 26 O O2N NAP . . . C 2 54.456 -40.482 29.134 1 115.96 ? O2N NAP 301 A 1 
HETATM 27 O O5D NAP . . . C 2 54.131 -39.458 26.875 1 125.71 ? O5D NAP 301 A 1 
HETATM 28 C C5D NAP . . . C 2 53.842 -40.757 26.298 1 122.66 ? C5D NAP 301 A 1 
HETATM 29 C C4D NAP . . . C 2 52.641 -40.664 25.383 1 117.21 ? C4D NAP 301 A 1 
HETATM 30 O O4D NAP . . . C 2 51.426 -40.71 26.166 1 114.49 ? O4D NAP 301 A 1 
HETATM 31 C C3D NAP . . . C 2 52.542 -39.384 24.546 1 113.79 ? C3D NAP 301 A 1 
HETATM 32 O O3D NAP . . . C 2 52.034 -39.597 23.231 1 115.75 ? O3D NAP 301 A 1 
HETATM 33 C C2D NAP . . . C 2 51.543 -38.553 25.341 1 107.73 ? C2D NAP 301 A 1 
HETATM 34 O O2D NAP . . . C 2 50.856 -37.656 24.48 1 98.97 ? O2D NAP 301 A 1 
HETATM 35 C C1D NAP . . . C 2 50.563 -39.66 25.764 1 114.45 ? C1D NAP 301 A 1 
HETATM 36 N N1N NAP . . . C 2 49.714 -39.238 26.961 1 121.29 ? N1N NAP 301 A 1 
HETATM 37 C C2N NAP . . . C 2 50.308 -39.07 28.209 1 124.83 ? C2N NAP 301 A 1 
HETATM 38 C C3N NAP . . . C 2 49.551 -38.723 29.313 1 123.25 ? C3N NAP 301 A 1 
HETATM 39 C C7N NAP . . . C 2 50.083 -38.659 30.704 1 118.05 ? C7N NAP 301 A 1 
HETATM 40 O O7N NAP . . . C 2 49.503 -37.972 31.532 1 121.1 ? O7N NAP 301 A 1 
HETATM 41 N N7N NAP . . . C 2 51.239 -39.257 30.966 1 111.92 ? N7N NAP 301 A 1 
HETATM 42 C C4N NAP . . . C 2 48.182 -38.557 29.149 1 125.42 ? C4N NAP 301 A 1 
HETATM 43 C C5N NAP . . . C 2 47.599 -38.754 27.912 1 125.25 ? C5N NAP 301 A 1 
HETATM 44 C C6N NAP . . . C 2 48.387 -39.073 26.82 1 124.76 ? C6N NAP 301 A 1 
HETATM 45 P P2B NAP . . . C 2 63.786 -36.428 24.615 1 143.88 ? P2B NAP 301 A 1 
HETATM 46 O O1X NAP . . . C 2 63.403 -35.33 25.558 1 143.45 ? O1X NAP 301 A 1 
HETATM 47 O O2X NAP . . . C 2 64.886 -37.34 25.083 1 147.06 ? O2X NAP 301 A 1 
HETATM 48 O O3X NAP . . . C 2 64.01 -36.027 23.222 1 140.42 ? O3X NAP 301 A 1 
HETATM 49 H HOA2 NAP . . . C 2 55.715 -36.29 28.027 1 126.78 ? HOA2 NAP 301 A 1 
HETATM 50 H H51A NAP . . . C 2 57.349 -37.535 25.132 1 135.37 ? H51A NAP 301 A 1 
HETATM 51 H H52A NAP . . . C 2 58.744 -36.655 25.763 1 135.39 ? H52A NAP 301 A 1 
HETATM 52 H H4B NAP . . . C 2 58.735 -39.451 24.48 1 133.75 ? H4B NAP 301 A 1 
HETATM 53 H H3B NAP . . . C 2 60.646 -38.585 26.312 1 130.67 ? H3B NAP 301 A 1 
HETATM 54 H HO3A NAP . . . C 2 62.229 -39.79 25.117 1 120.78 ? HO3A NAP 301 A 1 
HETATM 55 H H2B NAP . . . C 2 61.079 -36.61 25.203 1 136.49 ? H2B NAP 301 A 1 
HETATM 56 H H1B NAP . . . C 2 61.146 -38.12 22.503 1 130.45 ? H1B NAP 301 A 1 
HETATM 57 H H8A NAP . . . C 2 60.064 -34.809 24.21 1 119.66 ? H8A NAP 301 A 1 
HETATM 58 H H61A NAP . . . C 2 60.937 -32.286 18.607 1 112.13 ? H61A NAP 301 A 1 
HETATM 59 H H62A NAP . . . C 2 60.411 -31.967 20.23 1 112.07 ? H62A NAP 301 A 1 
HETATM 60 H H2A NAP . . . C 2 61.94 -36.683 18.35 1 112.63 ? H2A NAP 301 A 1 
HETATM 61 H H51N NAP . . . C 2 53.722 -41.564 27.016 1 122.5 ? H51N NAP 301 A 1 
HETATM 62 H H52N NAP . . . C 2 54.751 -41.001 25.75 1 123.16 ? H52N NAP 301 A 1 
HETATM 63 H H4D NAP . . . C 2 52.595 -41.559 24.766 1 116.93 ? H4D NAP 301 A 1 
HETATM 64 H H3D NAP . . . C 2 53.474 -38.824 24.475 1 113.69 ? H3D NAP 301 A 1 
HETATM 65 H HO3N NAP . . . C 2 52.452 -40.426 22.88 1 115.89 ? HO3N NAP 301 A 1 
HETATM 66 H H2D NAP . . . C 2 51.985 -38.016 26.178 1 107.79 ? H2D NAP 301 A 1 
HETATM 67 H HO2N NAP . . . C 2 50.044 -37.331 24.949 1 98.71 ? HO2N NAP 301 A 1 
HETATM 68 H H1D NAP . . . C 2 49.886 -40.02 24.991 1 115.2 ? H1D NAP 301 A 1 
HETATM 69 H H2N NAP . . . C 2 51.389 -39.178 28.273 1 125.99 ? H2N NAP 301 A 1 
HETATM 70 H H71N NAP . . . C 2 51.764 -39.783 30.276 1 111.67 ? H71N NAP 301 A 1 
HETATM 71 H H72N NAP . . . C 2 51.661 -39.249 31.888 1 111.76 ? H72N NAP 301 A 1 
HETATM 72 H H4N NAP . . . C 2 47.535 -38.256 29.971 1 125.96 ? H4N NAP 301 A 1 
HETATM 73 H H5N NAP . . . C 2 46.519 -38.687 27.793 1 125.05 ? H5N NAP 301 A 1 
HETATM 74 H H6N NAP . . . C 2 47.94 -39.175 25.834 1 125.38 ? H6N NAP 301 A 1 
HETATM 75 H HOP2 NAP . . . C 2 65.091 -38.135 24.526 1 147.02 ? HOP2 NAP 301 A 1 
HETATM 76 H HOP3 NAP . . . C 2 63.428 -36.313 22.471 1 140.38 ? HOP3 NAP 301 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           76 
#