data_4YZC # _model_server_result.job_id oUUZ7HoJe27YDlmkEciqbw _model_server_result.datetime_utc '2024-11-27 01:46:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 4YZC # _exptl.entry_id 4YZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 466.531 _entity.id 2 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description STAUROSPORINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YZC _cell.length_a 49.337 _cell.length_b 155.26 _cell.length_c 155.643 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 162 A HIS 723 1_555 A N SEP 163 A SEP 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C SEP 163 A SEP 724 1_555 A N PHE 164 A PHE 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C PHE 164 A PHE 725 1_555 A N SEP 165 A SEP 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C SEP 165 A SEP 726 1_555 A N ARG 166 A ARG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C ARG 167 A ARG 728 1_555 A N SEP 168 A SEP 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C SEP 168 A SEP 729 1_555 A N GLY 169 A GLY 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale7 B C HIS 162 B HIS 723 1_555 B N SEP 163 B SEP 724 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C SEP 163 B SEP 724 1_555 B N PHE 164 B PHE 725 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C PHE 164 B PHE 725 1_555 B N SEP 165 B SEP 726 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale10 B C SEP 165 B SEP 726 1_555 B N ARG 166 B ARG 727 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale11 B C ARG 167 B ARG 728 1_555 B N SEP 168 B SEP 729 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 B C SEP 168 B SEP 729 1_555 B N GLY 169 B GLY 730 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? # _chem_comp.formula 'C28 H26 N4 O3' _chem_comp.formula_weight 466.531 _chem_comp.id STU _chem_comp.mon_nstd_flag . _chem_comp.name STAUROSPORINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C25 STU sing 308 n n O4 C21 STU sing 309 n n C25 C24 STU sing 310 n n C25 N3 STU sing 311 n n C25 H25 STU sing 312 n n C24 C23 STU sing 313 n n C24 H241 STU sing 314 n n C24 H242 STU sing 315 n n C23 C22 STU sing 316 n n C23 N4 STU sing 317 n n C23 H23 STU sing 318 n n C22 C21 STU sing 319 n n C22 O6 STU sing 320 n n C22 H22 STU sing 321 n n C21 C26 STU sing 322 n n C21 N2 STU sing 323 n n C26 H261 STU sing 324 n n C26 H262 STU sing 325 n n C26 H263 STU sing 326 n n N2 C18 STU sing 327 n y N2 C17 STU sing 328 n y C18 C19 STU doub 329 n y C18 C11 STU sing 330 n y C19 C6 STU sing 331 n y C19 N3 STU sing 332 n y C6 C7 STU doub 333 n y C6 C5 STU sing 334 n y C7 C10 STU sing 335 n y C7 C8 STU sing 336 n n C10 C11 STU doub 337 n y C10 C9 STU sing 338 n n C11 C12 STU sing 339 n y C12 C17 STU doub 340 n y C12 C13 STU sing 341 n y C17 C16 STU sing 342 n y C16 C15 STU doub 343 n y C16 H16 STU sing 344 n n C15 C14 STU sing 345 n y C15 H15 STU sing 346 n n C14 C13 STU doub 347 n y C14 H14 STU sing 348 n n C13 H13 STU sing 349 n n C9 N1 STU sing 350 n n C9 H91 STU sing 351 n n C9 H92 STU sing 352 n n N1 C8 STU sing 353 n n N1 HN1 STU sing 354 n n C8 O5 STU doub 355 n n C5 C20 STU doub 356 n y C5 C4 STU sing 357 n y C20 C1 STU sing 358 n y C20 N3 STU sing 359 n y C1 C2 STU doub 360 n y C1 H1 STU sing 361 n n C2 C3 STU sing 362 n y C2 H2 STU sing 363 n n C3 C4 STU doub 364 n y C3 H3 STU sing 365 n n C4 H4 STU sing 366 n n O6 C27 STU sing 367 n n C27 H271 STU sing 368 n n C27 H272 STU sing 369 n n C27 H273 STU sing 370 n n N4 C28 STU sing 371 n n N4 HN4 STU sing 372 n n C28 H281 STU sing 373 n n C28 H282 STU sing 374 n n C28 H283 STU sing 375 n n # _atom_sites.entry_id 4YZC _atom_sites.fract_transf_matrix[1][1] 0.020269 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 STU A 1 1001 1 STU STU . D 2 STU B 1 1001 2 STU STU . E 3 HOH A 1 1101 26 HOH HOH . E 3 HOH A 2 1102 64 HOH HOH . E 3 HOH A 3 1103 6 HOH HOH . E 3 HOH A 4 1104 63 HOH HOH . E 3 HOH A 5 1105 5 HOH HOH . E 3 HOH A 6 1106 13 HOH HOH . E 3 HOH A 7 1107 27 HOH HOH . E 3 HOH A 8 1108 28 HOH HOH . E 3 HOH A 9 1109 32 HOH HOH . E 3 HOH A 10 1110 17 HOH HOH . E 3 HOH A 11 1111 8 HOH HOH . E 3 HOH A 12 1112 59 HOH HOH . E 3 HOH A 13 1113 31 HOH HOH . E 3 HOH A 14 1114 23 HOH HOH . E 3 HOH A 15 1115 67 HOH HOH . E 3 HOH A 16 1116 7 HOH HOH . E 3 HOH A 17 1117 3 HOH HOH . E 3 HOH A 18 1118 14 HOH HOH . E 3 HOH A 19 1119 34 HOH HOH . E 3 HOH A 20 1120 25 HOH HOH . E 3 HOH A 21 1121 57 HOH HOH . E 3 HOH A 22 1122 36 HOH HOH . E 3 HOH A 23 1123 30 HOH HOH . E 3 HOH A 24 1124 19 HOH HOH . E 3 HOH A 25 1125 24 HOH HOH . E 3 HOH A 26 1126 56 HOH HOH . E 3 HOH A 27 1127 15 HOH HOH . E 3 HOH A 28 1128 68 HOH HOH . F 3 HOH B 1 1101 45 HOH HOH . F 3 HOH B 2 1102 11 HOH HOH . F 3 HOH B 3 1103 9 HOH HOH . F 3 HOH B 4 1104 1 HOH HOH . F 3 HOH B 5 1105 2 HOH HOH . F 3 HOH B 6 1106 58 HOH HOH . F 3 HOH B 7 1107 16 HOH HOH . F 3 HOH B 8 1108 18 HOH HOH . F 3 HOH B 9 1109 50 HOH HOH . F 3 HOH B 10 1110 44 HOH HOH . F 3 HOH B 11 1111 62 HOH HOH . F 3 HOH B 12 1112 60 HOH HOH . F 3 HOH B 13 1113 29 HOH HOH . F 3 HOH B 14 1114 65 HOH HOH . F 3 HOH B 15 1115 4 HOH HOH . F 3 HOH B 16 1116 12 HOH HOH . F 3 HOH B 17 1117 21 HOH HOH . F 3 HOH B 18 1118 47 HOH HOH . F 3 HOH B 19 1119 43 HOH HOH . F 3 HOH B 20 1120 38 HOH HOH . F 3 HOH B 21 1121 52 HOH HOH . F 3 HOH B 22 1122 55 HOH HOH . F 3 HOH B 23 1123 42 HOH HOH . F 3 HOH B 24 1124 39 HOH HOH . F 3 HOH B 25 1125 48 HOH HOH . F 3 HOH B 26 1126 61 HOH HOH . F 3 HOH B 27 1127 22 HOH HOH . F 3 HOH B 28 1128 41 HOH HOH . F 3 HOH B 29 1129 51 HOH HOH . F 3 HOH B 30 1130 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O4 STU . . . C 2 -20.084 35.708 -53.719 1 26.47 ? O4 STU 1001 A 1 HETATM 2 C C25 STU . . . C 2 -21.111 34.656 -53.571 1 32.82 ? C25 STU 1001 A 1 HETATM 3 C C24 STU . . . C 2 -21.357 34.392 -52.068 1 33.55 ? C24 STU 1001 A 1 HETATM 4 C C23 STU . . . C 2 -20.46 35.269 -51.239 1 29.94 ? C23 STU 1001 A 1 HETATM 5 C C22 STU . . . C 2 -19.048 35.128 -51.67 1 29.84 ? C22 STU 1001 A 1 HETATM 6 C C21 STU . . . C 2 -18.877 35.748 -53.024 1 33.78 ? C21 STU 1001 A 1 HETATM 7 C C26 STU . . . C 2 -18.54 37.187 -52.896 1 34.09 ? C26 STU 1001 A 1 HETATM 8 N N2 STU . . . C 2 -17.844 35.041 -53.767 1 26.22 ? N2 STU 1001 A 1 HETATM 9 C C18 STU . . . C 2 -18.137 33.888 -54.531 1 26.84 ? C18 STU 1001 A 1 HETATM 10 C C19 STU . . . C 2 -19.303 33.234 -54.731 1 27.68 ? C19 STU 1001 A 1 HETATM 11 C C6 STU . . . C 2 -19.397 32.067 -55.544 1 27.63 ? C6 STU 1001 A 1 HETATM 12 C C7 STU . . . C 2 -18.209 31.606 -56.151 1 27.29 ? C7 STU 1001 A 1 HETATM 13 C C10 STU . . . C 2 -17.04 32.268 -55.947 1 25.72 ? C10 STU 1001 A 1 HETATM 14 C C11 STU . . . C 2 -16.977 33.416 -55.137 1 28.22 ? C11 STU 1001 A 1 HETATM 15 C C12 STU . . . C 2 -15.908 34.283 -54.762 1 25.71 ? C12 STU 1001 A 1 HETATM 16 C C17 STU . . . C 2 -16.43 35.278 -53.924 1 27.04 ? C17 STU 1001 A 1 HETATM 17 C C16 STU . . . C 2 -15.597 36.263 -53.412 1 27.87 ? C16 STU 1001 A 1 HETATM 18 C C15 STU . . . C 2 -14.228 36.268 -53.727 1 33.93 ? C15 STU 1001 A 1 HETATM 19 C C14 STU . . . C 2 -13.697 35.271 -54.567 1 32.22 ? C14 STU 1001 A 1 HETATM 20 C C13 STU . . . C 2 -14.55 34.28 -55.083 1 26.95 ? C13 STU 1001 A 1 HETATM 21 C C9 STU . . . C 2 -15.872 31.589 -56.71 1 25.69 ? C9 STU 1001 A 1 HETATM 22 N N1 STU . . . C 2 -16.559 30.417 -57.3 1 23.49 ? N1 STU 1001 A 1 HETATM 23 C C8 STU . . . C 2 -17.954 30.53 -56.989 1 23.47 ? C8 STU 1001 A 1 HETATM 24 O O5 STU . . . C 2 -18.878 29.618 -57.526 1 25.88 ? O5 STU 1001 A 1 HETATM 25 C C5 STU . . . C 2 -20.761 31.628 -55.541 1 26.95 ? C5 STU 1001 A 1 HETATM 26 C C20 STU . . . C 2 -21.506 32.488 -54.753 1 30.22 ? C20 STU 1001 A 1 HETATM 27 C C1 STU . . . C 2 -22.861 32.337 -54.541 1 33.2 ? C1 STU 1001 A 1 HETATM 28 C C2 STU . . . C 2 -23.544 31.283 -55.141 1 38.97 ? C2 STU 1001 A 1 HETATM 29 C C3 STU . . . C 2 -22.835 30.386 -55.954 1 36.63 ? C3 STU 1001 A 1 HETATM 30 C C4 STU . . . C 2 -21.444 30.557 -56.154 1 32.58 ? C4 STU 1001 A 1 HETATM 31 N N3 STU . . . C 2 -20.663 33.528 -54.182 1 32.78 ? N3 STU 1001 A 1 HETATM 32 O O6 STU . . . C 2 -18.703 33.737 -51.704 1 27.9 ? O6 STU 1001 A 1 HETATM 33 C C27 STU . . . C 2 -17.381 33.422 -51.237 1 32.45 ? C27 STU 1001 A 1 HETATM 34 N N4 STU . . . C 2 -20.563 34.887 -49.839 1 45.89 1 N4 STU 1001 A 1 HETATM 35 C C28 STU . . . C 2 -20.222 36.008 -48.988 1 34.3 ? C28 STU 1001 A 1 HETATM 36 H H25 STU . . . C 2 -21.941 34.948 -53.992 1 39.39 ? H25 STU 1001 A 1 HETATM 37 H H241 STU . . . C 2 -21.168 33.455 -51.868 1 40.27 ? H241 STU 1001 A 1 HETATM 38 H H242 STU . . . C 2 -22.289 34.587 -51.853 1 40.27 ? H242 STU 1001 A 1 HETATM 39 H H23 STU . . . C 2 -20.737 36.199 -51.34 1 35.93 ? H23 STU 1001 A 1 HETATM 40 H H22 STU . . . C 2 -18.47 35.587 -51.031 1 35.81 ? H22 STU 1001 A 1 HETATM 41 H H261 STU . . . C 2 -19.358 37.703 -52.765 1 40.91 ? H261 STU 1001 A 1 HETATM 42 H H262 STU . . . C 2 -18.092 37.49 -53.709 1 40.91 ? H262 STU 1001 A 1 HETATM 43 H H263 STU . . . C 2 -17.948 37.316 -52.131 1 40.91 ? H263 STU 1001 A 1 HETATM 44 H H16 STU . . . C 2 -15.964 36.955 -52.828 1 33.45 ? H16 STU 1001 A 1 HETATM 45 H H15 STU . . . C 2 -13.645 36.962 -53.364 1 40.72 ? H15 STU 1001 A 1 HETATM 46 H H14 STU . . . C 2 -12.747 35.269 -54.791 1 38.66 ? H14 STU 1001 A 1 HETATM 47 H H13 STU . . . C 2 -14.191 33.585 -55.666 1 32.34 ? H13 STU 1001 A 1 HETATM 48 H H91 STU . . . C 2 -15.168 31.309 -56.095 1 30.82 ? H91 STU 1001 A 1 HETATM 49 H H92 STU . . . C 2 -15.521 32.175 -57.406 1 30.82 ? H92 STU 1001 A 1 HETATM 50 H HN1 STU . . . C 2 -16.181 29.795 -57.851 1 28.19 ? HN1 STU 1001 A 1 HETATM 51 H H1 STU . . . C 2 -23.341 32.971 -53.974 1 39.84 ? H1 STU 1001 A 1 HETATM 52 H H2 STU . . . C 2 -24.503 31.169 -54.999 1 46.77 ? H2 STU 1001 A 1 HETATM 53 H H3 STU . . . C 2 -23.3 29.641 -56.379 1 43.95 ? H3 STU 1001 A 1 HETATM 54 H H4 STU . . . C 2 -20.954 29.93 -56.719 1 39.1 ? H4 STU 1001 A 1 HETATM 55 H H271 STU . . . C 2 -16.848 34.238 -51.196 1 38.94 ? H271 STU 1001 A 1 HETATM 56 H H272 STU . . . C 2 -17.436 33.024 -50.348 1 38.94 ? H272 STU 1001 A 1 HETATM 57 H H273 STU . . . C 2 -16.962 32.79 -51.851 1 38.94 ? H273 STU 1001 A 1 HETATM 58 H HN4 STU . . . C 2 -21.417 34.621 -49.661 1 55.07 1 HN4 STU 1001 A 1 HETATM 59 H H281 STU . . . C 2 -20.977 36.625 -48.944 1 41.16 ? H281 STU 1001 A 1 HETATM 60 H H282 STU . . . C 2 -20.013 35.684 -48.091 1 41.16 ? H282 STU 1001 A 1 HETATM 61 H H283 STU . . . C 2 -19.445 36.471 -49.355 1 41.16 ? H283 STU 1001 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 61 #