data_4YZF # _model_server_result.job_id c7lsMMVERC5MdAxpdm3leQ _model_server_result.datetime_utc '2024-11-04 22:32:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yzf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":1000}' # _entry.id 4YZF # _exptl.entry_id 4YZF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 464.6 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.16 _cell.angle_gamma 90 _cell.entry_id 4YZF _cell.length_a 152.825 _cell.length_b 171.957 _cell.length_c 271.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YZF _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? hexameric 6 author_defined_assembly 1 ? hexameric 6 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,H,M,N 1 1 C,D,I,J,K,L,O,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 22 E CYS 22 1_555 E SG CYS 97 E CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 E SG CYS 138 E CYS 138 1_555 F SG CYS 218 F CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 E SG CYS 150 E CYS 150 1_555 E SG CYS 205 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 F SG CYS 23 F CYS 23 1_555 F SG CYS 92 F CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? disulf ? disulf5 F SG CYS 138 F CYS 138 1_555 F SG CYS 198 F CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf6 G SG CYS 22 G CYS 22 1_555 G SG CYS 97 G CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf7 G SG CYS 138 G CYS 138 1_555 H SG CYS 218 H CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf8 G SG CYS 150 G CYS 150 1_555 G SG CYS 205 G CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf9 H SG CYS 23 H CYS 23 1_555 H SG CYS 92 H CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf10 H SG CYS 138 H CYS 138 1_555 H SG CYS 198 H CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf11 I SG CYS 22 I CYS 22 1_555 I SG CYS 97 I CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf12 I SG CYS 138 I CYS 138 1_555 J SG CYS 218 J CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf13 I SG CYS 150 I CYS 150 1_555 I SG CYS 205 I CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf14 J SG CYS 23 J CYS 23 1_555 J SG CYS 92 J CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf15 J SG CYS 138 J CYS 138 1_555 J SG CYS 198 J CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf16 K SG CYS 22 K CYS 22 1_555 K SG CYS 97 K CYS 97 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf17 K SG CYS 138 K CYS 138 1_555 L SG CYS 218 L CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf18 K SG CYS 150 K CYS 150 1_555 K SG CYS 205 K CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf19 L SG CYS 23 L CYS 23 1_555 L SG CYS 92 L CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? disulf ? disulf20 L SG CYS 138 L CYS 138 1_555 L SG CYS 198 L CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? covale ? covale1 A NZ LYS 539 A LYS 539 1_555 M CAJ 4KU . A 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 A NZ LYS 851 A LYS 851 1_555 M CAI 4KU . A 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale3 B NZ LYS 539 B LYS 539 1_555 N CAJ 4KU . B 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.357 ? covale ? covale4 B NZ LYS 851 B LYS 851 1_555 N CAI 4KU . B 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale5 C NZ LYS 539 C LYS 539 1_555 O CAJ 4KU . C 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale6 C NZ LYS 851 C LYS 851 1_555 O CAI 4KU . C 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.473 ? covale ? covale7 D NZ LYS 539 D LYS 539 1_555 P CAJ 4KU . D 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale8 D NZ LYS 851 D LYS 851 1_555 P CAI 4KU . D 4KU 1000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C16 H20 N2 O6 S4' _chem_comp.formula_weight 464.6 _chem_comp.id 4KU _chem_comp.mon_nstd_flag . _chem_comp.name "2,2'-ethane-1,2-diylbis{5-[(sulfanylmethyl)amino]benzenesulfonic acid}" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA SBA 4KU doub 1 n n NAS CAI 4KU sing 2 n n NAS CAU 4KU sing 3 n n CAI SAG 4KU sing 4 n n CAO CAU 4KU doub 5 n y CAO CAY 4KU sing 6 n y CAU CAK 4KU sing 7 n y SBA OAB 4KU doub 8 n n SBA CAY 4KU sing 9 n n SBA OAE 4KU sing 10 n n CAY CAW 4KU doub 11 n y CAK CAM 4KU doub 12 n y CAW CAM 4KU sing 13 n y CAW CAQ 4KU sing 14 n n CAQ CAR 4KU sing 15 n n CAR CAX 4KU sing 16 n n OAD SBB 4KU doub 17 n n CAX CAN 4KU doub 18 n y CAX CAZ 4KU sing 19 n y CAN CAL 4KU sing 20 n y SBB CAZ 4KU sing 21 n n SBB OAF 4KU doub 22 n n SBB OAC 4KU sing 23 n n CAZ CAP 4KU doub 24 n y CAL CAV 4KU doub 25 n y CAP CAV 4KU sing 26 n y CAV NAT 4KU sing 27 n n NAT CAJ 4KU sing 28 n n SAH CAJ 4KU sing 29 n n CAO H1 4KU sing 30 n n NAS H2 4KU sing 31 n n CAI H3 4KU sing 32 n n CAI H4 4KU sing 33 n n SAG H5 4KU sing 34 n n CAK H6 4KU sing 35 n n CAM H7 4KU sing 36 n n CAQ H8 4KU sing 37 n n CAQ H9 4KU sing 38 n n CAR H10 4KU sing 39 n n CAR H11 4KU sing 40 n n CAN H12 4KU sing 41 n n CAL H13 4KU sing 42 n n NAT H14 4KU sing 43 n n CAJ H15 4KU sing 44 n n CAJ H16 4KU sing 45 n n SAH H17 4KU sing 46 n n CAP H18 4KU sing 47 n n OAE H19 4KU sing 48 n n OAC H20 4KU sing 49 n n # _atom_sites.entry_id 4YZF _atom_sites.fract_transf_matrix[1][1] 0.006543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001291 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005815 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003751 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 4 4KU A 1 1000 1000 4KU DRG . N 4 4KU B 1 1000 1000 4KU DRG . O 4 4KU C 1 1000 1000 4KU DRG . P 4 4KU D 1 1000 1000 4KU DRG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAE 4KU . . . O 4 -68.983 -0.917 38.497 1 118.8 ? OAE 4KU 1000 C 1 HETATM 2 S SBA 4KU . . . O 4 -68.235 0.132 37.828 1 118.08 ? SBA 4KU 1000 C 1 HETATM 3 O OAA 4KU . . . O 4 -68.452 -0.153 36.425 1 118.52 ? OAA 4KU 1000 C 1 HETATM 4 O OAB 4KU . . . O 4 -66.834 -0.181 38.047 1 116.11 ? OAB 4KU 1000 C 1 HETATM 5 C CAY 4KU . . . O 4 -68.704 1.784 38.266 1 119.25 ? CAY 4KU 1000 C 1 HETATM 6 C CAO 4KU . . . O 4 -69.429 2.573 37.357 1 120.77 ? CAO 4KU 1000 C 1 HETATM 7 C CAU 4KU . . . O 4 -69.808 3.871 37.68 1 121.99 ? CAU 4KU 1000 C 1 HETATM 8 N NAS 4KU . . . O 4 -70.547 4.619 36.695 1 123.76 ? NAS 4KU 1000 C 1 HETATM 9 C CAI 4KU . . . O 4 -71.181 5.883 36.929 1 125.67 ? CAI 4KU 1000 C 1 HETATM 10 S SAG 4KU . . . O 4 -70.287 7.186 37.448 1 125.13 ? SAG 4KU 1000 C 1 HETATM 11 C CAK 4KU . . . O 4 -69.461 4.392 38.927 1 121.67 ? CAK 4KU 1000 C 1 HETATM 12 C CAM 4KU . . . O 4 -68.744 3.63 39.843 1 120.12 ? CAM 4KU 1000 C 1 HETATM 13 C CAW 4KU . . . O 4 -68.366 2.33 39.507 1 118.92 ? CAW 4KU 1000 C 1 HETATM 14 C CAQ 4KU . . . O 4 -67.586 1.48 40.492 1 117.48 ? CAQ 4KU 1000 C 1 HETATM 15 C CAR 4KU . . . O 4 -67.761 2.145 41.813 1 117.99 ? CAR 4KU 1000 C 1 HETATM 16 C CAX 4KU . . . O 4 -66.615 1.838 42.724 1 116.51 ? CAX 4KU 1000 C 1 HETATM 17 C CAN 4KU . . . O 4 -66.094 0.56 42.808 1 115.41 ? CAN 4KU 1000 C 1 HETATM 18 C CAL 4KU . . . O 4 -65.04 0.335 43.692 1 114.35 ? CAL 4KU 1000 C 1 HETATM 19 C CAV 4KU . . . O 4 -64.511 1.362 44.467 1 114.38 ? CAV 4KU 1000 C 1 HETATM 20 N NAT 4KU . . . O 4 -63.419 1.115 45.372 1 113.54 ? NAT 4KU 1000 C 1 HETATM 21 C CAJ 4KU . . . O 4 -63.344 1.778 46.661 1 114.09 ? CAJ 4KU 1000 C 1 HETATM 22 S SAH 4KU . . . O 4 -63.197 3.435 46.799 1 114.99 ? SAH 4KU 1000 C 1 HETATM 23 C CAP 4KU . . . O 4 -65.041 2.631 44.357 1 115.49 ? CAP 4KU 1000 C 1 HETATM 24 C CAZ 4KU . . . O 4 -66.091 2.883 43.489 1 116.56 ? CAZ 4KU 1000 C 1 HETATM 25 S SBB 4KU . . . O 4 -66.739 4.513 43.369 1 118.3 ? SBB 4KU 1000 C 1 HETATM 26 O OAF 4KU . . . O 4 -68.112 4.588 43.792 1 120.03 ? OAF 4KU 1000 C 1 HETATM 27 O OAD 4KU . . . O 4 -66.758 5.077 42.033 1 118.56 ? OAD 4KU 1000 C 1 HETATM 28 O OAC 4KU . . . O 4 -66.027 5.481 44.185 1 118.36 ? OAC 4KU 1000 C 1 # _model_server_stats.io_time_ms 201 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #