data_4YZH
#
_model_server_result.job_id            oHglqNZF1dgyEcjxF91H5A 
_model_server_result.datetime_utc      '2024-10-19 16:29:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          4yzh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    4YZH 
#
_exptl.entry_id    4YZH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            4YZH 
_cell.length_a            60.291 
_cell.length_b            64.079 
_cell.length_c            100.079 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 4YZH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C LYS 2 B LYS 402 1_555 B N TPO 3 B TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale2 B C TPO 3 B TPO 403 1_555 B N VAL 4 B VAL 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc1 A OD2 ASP 36 A ASP 93 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc2 A OD1 ASP 36 A ASP 93 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
metalc ? metalc3 A O GLY 37 A GLY 94 1_555 D MN MN . A MN 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc4 A OD1 ASP 239 A ASP 296 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc5 A OD2 ASP 282 A ASP 339 1_555 C MN MN . A MN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? 
metalc ? metalc6 C MN MN . A MN 401 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc7 C MN MN . A MN 401 1_555 E O HOH . A HOH 574 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.478 ? 
metalc ? metalc8 C MN MN . A MN 401 1_555 F O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc9 D MN MN . A MN 402 1_555 E O HOH . A HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc10 D MN MN . A MN 402 1_555 E O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? 
metalc ? metalc11 D MN MN . A MN 402 1_555 B O1P TPO 3 B TPO 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
metalc ? metalc12 D MN MN . A MN 402 1_555 F O HOH . B HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     4YZH 
_atom_sites.fract_transf_matrix[1][1]    0.016586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015606 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009992 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MN A 1 401 1 MN MN . 
D 3 MN A 1 402 2 MN MN . 
E 4 HOH A 1 501 200 HOH HOH . 
E 4 HOH A 2 502 204 HOH HOH . 
E 4 HOH A 3 503 206 HOH HOH . 
E 4 HOH A 4 504 203 HOH HOH . 
E 4 HOH A 5 505 215 HOH HOH . 
E 4 HOH A 6 506 195 HOH HOH . 
E 4 HOH A 7 507 194 HOH HOH . 
E 4 HOH A 8 508 192 HOH HOH . 
E 4 HOH A 9 509 199 HOH HOH . 
E 4 HOH A 10 510 198 HOH HOH . 
E 4 HOH A 11 511 196 HOH HOH . 
E 4 HOH A 12 512 72 HOH HOH . 
E 4 HOH A 13 513 216 HOH HOH . 
E 4 HOH A 14 514 187 HOH HOH . 
E 4 HOH A 15 515 56 HOH HOH . 
E 4 HOH A 16 516 219 HOH HOH . 
E 4 HOH A 17 517 34 HOH HOH . 
E 4 HOH A 18 518 4 HOH HOH . 
E 4 HOH A 19 519 191 HOH HOH . 
E 4 HOH A 20 520 201 HOH HOH . 
E 4 HOH A 21 521 168 HOH HOH . 
E 4 HOH A 22 522 52 HOH HOH . 
E 4 HOH A 23 523 51 HOH HOH . 
E 4 HOH A 24 524 60 HOH HOH . 
E 4 HOH A 25 525 30 HOH HOH . 
E 4 HOH A 26 526 38 HOH HOH . 
E 4 HOH A 27 527 11 HOH HOH . 
E 4 HOH A 28 528 49 HOH HOH . 
E 4 HOH A 29 529 39 HOH HOH . 
E 4 HOH A 30 530 193 HOH HOH . 
E 4 HOH A 31 531 154 HOH HOH . 
E 4 HOH A 32 532 93 HOH HOH . 
E 4 HOH A 33 533 97 HOH HOH . 
E 4 HOH A 34 534 25 HOH HOH . 
E 4 HOH A 35 535 90 HOH HOH . 
E 4 HOH A 36 536 150 HOH HOH . 
E 4 HOH A 37 537 29 HOH HOH . 
E 4 HOH A 38 538 126 HOH HOH . 
E 4 HOH A 39 539 112 HOH HOH . 
E 4 HOH A 40 540 107 HOH HOH . 
E 4 HOH A 41 541 140 HOH HOH . 
E 4 HOH A 42 542 81 HOH HOH . 
E 4 HOH A 43 543 179 HOH HOH . 
E 4 HOH A 44 544 21 HOH HOH . 
E 4 HOH A 45 545 77 HOH HOH . 
E 4 HOH A 46 546 12 HOH HOH . 
E 4 HOH A 47 547 226 HOH HOH . 
E 4 HOH A 48 548 69 HOH HOH . 
E 4 HOH A 49 549 176 HOH HOH . 
E 4 HOH A 50 550 5 HOH HOH . 
E 4 HOH A 51 551 104 HOH HOH . 
E 4 HOH A 52 552 48 HOH HOH . 
E 4 HOH A 53 553 8 HOH HOH . 
E 4 HOH A 54 554 33 HOH HOH . 
E 4 HOH A 55 555 70 HOH HOH . 
E 4 HOH A 56 556 14 HOH HOH . 
E 4 HOH A 57 557 94 HOH HOH . 
E 4 HOH A 58 558 96 HOH HOH . 
E 4 HOH A 59 559 46 HOH HOH . 
E 4 HOH A 60 560 10 HOH HOH . 
E 4 HOH A 61 561 22 HOH HOH . 
E 4 HOH A 62 562 9 HOH HOH . 
E 4 HOH A 63 563 23 HOH HOH . 
E 4 HOH A 64 564 181 HOH HOH . 
E 4 HOH A 65 565 98 HOH HOH . 
E 4 HOH A 66 566 76 HOH HOH . 
E 4 HOH A 67 567 64 HOH HOH . 
E 4 HOH A 68 568 67 HOH HOH . 
E 4 HOH A 69 569 85 HOH HOH . 
E 4 HOH A 70 570 6 HOH HOH . 
E 4 HOH A 71 571 149 HOH HOH . 
E 4 HOH A 72 572 182 HOH HOH . 
E 4 HOH A 73 573 36 HOH HOH . 
E 4 HOH A 74 574 7 HOH HOH . 
E 4 HOH A 75 575 162 HOH HOH . 
E 4 HOH A 76 576 188 HOH HOH . 
E 4 HOH A 77 577 58 HOH HOH . 
E 4 HOH A 78 578 79 HOH HOH . 
E 4 HOH A 79 579 125 HOH HOH . 
E 4 HOH A 80 580 78 HOH HOH . 
E 4 HOH A 81 581 18 HOH HOH . 
E 4 HOH A 82 582 189 HOH HOH . 
E 4 HOH A 83 583 16 HOH HOH . 
E 4 HOH A 84 584 223 HOH HOH . 
E 4 HOH A 85 585 177 HOH HOH . 
E 4 HOH A 86 586 13 HOH HOH . 
E 4 HOH A 87 587 28 HOH HOH . 
E 4 HOH A 88 588 132 HOH HOH . 
E 4 HOH A 89 589 102 HOH HOH . 
E 4 HOH A 90 590 3 HOH HOH . 
E 4 HOH A 91 591 87 HOH HOH . 
E 4 HOH A 92 592 197 HOH HOH . 
E 4 HOH A 93 593 74 HOH HOH . 
E 4 HOH A 94 594 205 HOH HOH . 
E 4 HOH A 95 595 15 HOH HOH . 
E 4 HOH A 96 596 41 HOH HOH . 
E 4 HOH A 97 597 101 HOH HOH . 
E 4 HOH A 98 598 37 HOH HOH . 
E 4 HOH A 99 599 82 HOH HOH . 
E 4 HOH A 100 600 95 HOH HOH . 
E 4 HOH A 101 601 47 HOH HOH . 
E 4 HOH A 102 602 141 HOH HOH . 
E 4 HOH A 103 603 89 HOH HOH . 
E 4 HOH A 104 604 156 HOH HOH . 
E 4 HOH A 105 605 128 HOH HOH . 
E 4 HOH A 106 606 155 HOH HOH . 
E 4 HOH A 107 607 152 HOH HOH . 
E 4 HOH A 108 608 59 HOH HOH . 
E 4 HOH A 109 609 83 HOH HOH . 
E 4 HOH A 110 610 225 HOH HOH . 
E 4 HOH A 111 611 173 HOH HOH . 
E 4 HOH A 112 612 99 HOH HOH . 
E 4 HOH A 113 613 111 HOH HOH . 
E 4 HOH A 114 614 108 HOH HOH . 
E 4 HOH A 115 615 145 HOH HOH . 
E 4 HOH A 116 616 167 HOH HOH . 
E 4 HOH A 117 617 35 HOH HOH . 
E 4 HOH A 118 618 106 HOH HOH . 
E 4 HOH A 119 619 105 HOH HOH . 
E 4 HOH A 120 620 133 HOH HOH . 
E 4 HOH A 121 621 209 HOH HOH . 
E 4 HOH A 122 622 55 HOH HOH . 
E 4 HOH A 123 623 114 HOH HOH . 
E 4 HOH A 124 624 120 HOH HOH . 
E 4 HOH A 125 625 180 HOH HOH . 
E 4 HOH A 126 626 73 HOH HOH . 
E 4 HOH A 127 627 119 HOH HOH . 
E 4 HOH A 128 628 86 HOH HOH . 
E 4 HOH A 129 629 61 HOH HOH . 
E 4 HOH A 130 630 63 HOH HOH . 
E 4 HOH A 131 631 50 HOH HOH . 
E 4 HOH A 132 632 131 HOH HOH . 
E 4 HOH A 133 633 92 HOH HOH . 
E 4 HOH A 134 634 169 HOH HOH . 
E 4 HOH A 135 635 24 HOH HOH . 
E 4 HOH A 136 636 84 HOH HOH . 
E 4 HOH A 137 637 45 HOH HOH . 
E 4 HOH A 138 638 17 HOH HOH . 
E 4 HOH A 139 639 144 HOH HOH . 
E 4 HOH A 140 640 54 HOH HOH . 
E 4 HOH A 141 641 68 HOH HOH . 
E 4 HOH A 142 642 153 HOH HOH . 
E 4 HOH A 143 643 75 HOH HOH . 
E 4 HOH A 144 644 40 HOH HOH . 
E 4 HOH A 145 645 127 HOH HOH . 
E 4 HOH A 146 646 218 HOH HOH . 
E 4 HOH A 147 647 163 HOH HOH . 
E 4 HOH A 148 648 66 HOH HOH . 
E 4 HOH A 149 649 26 HOH HOH . 
E 4 HOH A 150 650 118 HOH HOH . 
E 4 HOH A 151 651 146 HOH HOH . 
E 4 HOH A 152 652 32 HOH HOH . 
E 4 HOH A 153 653 210 HOH HOH . 
E 4 HOH A 154 654 222 HOH HOH . 
E 4 HOH A 155 655 123 HOH HOH . 
E 4 HOH A 156 656 121 HOH HOH . 
E 4 HOH A 157 657 157 HOH HOH . 
E 4 HOH A 158 658 139 HOH HOH . 
E 4 HOH A 159 659 57 HOH HOH . 
E 4 HOH A 160 660 80 HOH HOH . 
E 4 HOH A 161 661 71 HOH HOH . 
E 4 HOH A 162 662 129 HOH HOH . 
E 4 HOH A 163 663 65 HOH HOH . 
E 4 HOH A 164 664 53 HOH HOH . 
E 4 HOH A 165 665 43 HOH HOH . 
E 4 HOH A 166 666 170 HOH HOH . 
E 4 HOH A 167 667 164 HOH HOH . 
E 4 HOH A 168 668 175 HOH HOH . 
E 4 HOH A 169 669 135 HOH HOH . 
E 4 HOH A 170 670 186 HOH HOH . 
E 4 HOH A 171 671 213 HOH HOH . 
E 4 HOH A 172 672 138 HOH HOH . 
E 4 HOH A 173 673 88 HOH HOH . 
E 4 HOH A 174 674 183 HOH HOH . 
E 4 HOH A 175 675 91 HOH HOH . 
E 4 HOH A 176 676 143 HOH HOH . 
E 4 HOH A 177 677 148 HOH HOH . 
E 4 HOH A 178 678 110 HOH HOH . 
E 4 HOH A 179 679 109 HOH HOH . 
E 4 HOH A 180 680 151 HOH HOH . 
E 4 HOH A 181 681 42 HOH HOH . 
E 4 HOH A 182 682 103 HOH HOH . 
E 4 HOH A 183 683 230 HOH HOH . 
E 4 HOH A 184 684 208 HOH HOH . 
E 4 HOH A 185 685 117 HOH HOH . 
E 4 HOH A 186 686 220 HOH HOH . 
E 4 HOH A 187 687 214 HOH HOH . 
E 4 HOH A 188 688 27 HOH HOH . 
E 4 HOH A 189 689 142 HOH HOH . 
E 4 HOH A 190 690 172 HOH HOH . 
E 4 HOH A 191 691 212 HOH HOH . 
E 4 HOH A 192 692 174 HOH HOH . 
E 4 HOH A 193 693 124 HOH HOH . 
E 4 HOH A 194 694 227 HOH HOH . 
E 4 HOH A 195 695 224 HOH HOH . 
E 4 HOH A 196 696 166 HOH HOH . 
E 4 HOH A 197 697 165 HOH HOH . 
E 4 HOH A 198 698 202 HOH HOH . 
E 4 HOH A 199 699 171 HOH HOH . 
E 4 HOH A 200 700 207 HOH HOH . 
E 4 HOH A 201 701 158 HOH HOH . 
E 4 HOH A 202 702 229 HOH HOH . 
E 4 HOH A 203 703 217 HOH HOH . 
E 4 HOH A 204 704 161 HOH HOH . 
E 4 HOH A 205 705 221 HOH HOH . 
E 4 HOH A 206 706 184 HOH HOH . 
E 4 HOH A 207 707 228 HOH HOH . 
E 4 HOH A 208 708 178 HOH HOH . 
E 4 HOH A 209 709 159 HOH HOH . 
E 4 HOH A 210 710 137 HOH HOH . 
E 4 HOH A 211 711 116 HOH HOH . 
E 4 HOH A 212 712 147 HOH HOH . 
E 4 HOH A 213 713 211 HOH HOH . 
E 4 HOH A 214 714 113 HOH HOH . 
E 4 HOH A 215 715 160 HOH HOH . 
E 4 HOH A 216 716 122 HOH HOH . 
E 4 HOH A 217 717 185 HOH HOH . 
E 4 HOH A 218 718 190 HOH HOH . 
F 4 HOH B 1 501 2 HOH HOH . 
F 4 HOH B 2 502 1 HOH HOH . 
F 4 HOH B 3 503 19 HOH HOH . 
F 4 HOH B 4 504 62 HOH HOH . 
F 4 HOH B 5 505 20 HOH HOH . 
F 4 HOH B 6 506 134 HOH HOH . 
F 4 HOH B 7 507 130 HOH HOH . 
F 4 HOH B 8 508 100 HOH HOH . 
F 4 HOH B 9 509 44 HOH HOH . 
F 4 HOH B 10 510 31 HOH HOH . 
F 4 HOH B 11 511 115 HOH HOH . 
F 4 HOH B 12 512 136 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               15.102 
_atom_site.Cartn_y               -23.907 
_atom_site.Cartn_z               -21.034 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        10.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           401 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#