data_4YZI # _model_server_result.job_id VIdy59j9j3bAzfmOkUDd8Q _model_server_result.datetime_utc '2025-02-23 03:27:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 4yzi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 4YZI # _exptl.entry_id 4YZI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 282.461 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OLEIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 4YZI _cell.length_a 59.64 _cell.length_b 142.42 _cell.length_c 92.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4YZI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_554 -x,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -46.12 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 66 1_555 A SG CYS 28 A CYS 66 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf2 A SG CYS 35 A CYS 73 1_555 A SG CYS 37 A CYS 75 3_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A NZ LYS 258 A LYS 296 1_555 B C15 RET . A RET 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? metalc ? metalc1 A OD1 ASP 2 A ASP 40 1_555 H ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc2 A ND1 HIS 6 A HIS 44 1_555 H ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc3 A NE2 HIS 9 A HIS 47 1_555 H ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc4 A OD1 ASP 104 A ASP 142 1_555 H ZN ZN . A ZN 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? # _chem_comp.formula 'C18 H34 O2' _chem_comp.formula_weight 282.461 _chem_comp.id OLA _chem_comp.mon_nstd_flag . _chem_comp.name 'OLEIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 OLA doub 237 n n C1 O2 OLA sing 238 n n C1 C2 OLA sing 239 n n O2 HO2 OLA sing 240 n n C2 C3 OLA sing 241 n n C2 H21 OLA sing 242 n n C2 H22 OLA sing 243 n n C3 C4 OLA sing 244 n n C3 H31 OLA sing 245 n n C3 H32 OLA sing 246 n n C4 C5 OLA sing 247 n n C4 H41 OLA sing 248 n n C4 H42 OLA sing 249 n n C5 C6 OLA sing 250 n n C5 H51 OLA sing 251 n n C5 H52 OLA sing 252 n n C6 C7 OLA sing 253 n n C6 H61 OLA sing 254 n n C6 H62 OLA sing 255 n n C7 C8 OLA sing 256 n n C7 H71 OLA sing 257 n n C7 H72 OLA sing 258 n n C8 C9 OLA sing 259 n n C8 H81 OLA sing 260 n n C8 H82 OLA sing 261 n n C9 C10 OLA doub 262 z n C9 H9 OLA sing 263 n n C10 C11 OLA sing 264 n n C10 H10 OLA sing 265 n n C11 C12 OLA sing 266 n n C11 H111 OLA sing 267 n n C11 H112 OLA sing 268 n n C12 C13 OLA sing 269 n n C12 H121 OLA sing 270 n n C12 H122 OLA sing 271 n n C13 C14 OLA sing 272 n n C13 H131 OLA sing 273 n n C13 H132 OLA sing 274 n n C14 C15 OLA sing 275 n n C14 H141 OLA sing 276 n n C14 H142 OLA sing 277 n n C15 C16 OLA sing 278 n n C15 H151 OLA sing 279 n n C15 H152 OLA sing 280 n n C16 C17 OLA sing 281 n n C16 H161 OLA sing 282 n n C16 H162 OLA sing 283 n n C17 C18 OLA sing 284 n n C17 H171 OLA sing 285 n n C17 H172 OLA sing 286 n n C18 H181 OLA sing 287 n n C18 H182 OLA sing 288 n n C18 H183 OLA sing 289 n n # _atom_sites.entry_id 4YZI _atom_sites.fract_transf_matrix[1][1] 0.016767 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 401 1 RET RET . C 3 OLA A 1 402 1 OLA OLA . D 3 OLA A 1 403 2 OLA OLA . E 3 OLA A 1 404 3 OLA OLA . F 3 OLA A 1 405 4 OLA OLA . G 3 OLA A 1 406 5 OLA OLA . H 4 ZN A 1 407 1 ZN ZN . I 5 HOH A 1 501 16 HOH HOH . I 5 HOH A 2 502 13 HOH HOH . I 5 HOH A 3 503 2 HOH HOH . I 5 HOH A 4 504 9 HOH HOH . I 5 HOH A 5 505 3 HOH HOH . I 5 HOH A 6 506 15 HOH HOH . I 5 HOH A 7 507 19 HOH HOH . I 5 HOH A 8 508 8 HOH HOH . I 5 HOH A 9 509 4 HOH HOH . I 5 HOH A 10 510 1 HOH HOH . I 5 HOH A 11 511 14 HOH HOH . I 5 HOH A 12 512 10 HOH HOH . I 5 HOH A 13 513 6 HOH HOH . I 5 HOH A 14 514 17 HOH HOH . I 5 HOH A 15 515 5 HOH HOH . I 5 HOH A 16 516 12 HOH HOH . I 5 HOH A 17 517 18 HOH HOH . I 5 HOH A 18 518 7 HOH HOH . I 5 HOH A 19 519 11 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OLA . . . E 3 15.81 -46.576 -16.281 1 62.64 ? C1 OLA 404 A 1 HETATM 2 C C2 OLA . . . E 3 15.177 -45.31 -16.85 1 63.53 ? C2 OLA 404 A 1 HETATM 3 C C3 OLA . . . E 3 15.546 -44.082 -16.025 1 57.58 ? C3 OLA 404 A 1 HETATM 4 C C4 OLA . . . E 3 14.867 -42.831 -16.573 1 61.6 ? C4 OLA 404 A 1 HETATM 5 C C5 OLA . . . E 3 15.773 -41.609 -16.446 1 62.63 ? C5 OLA 404 A 1 HETATM 6 C C6 OLA . . . E 3 15.652 -40.708 -17.672 1 67.55 ? C6 OLA 404 A 1 HETATM 7 C C7 OLA . . . E 3 15.394 -39.253 -17.289 1 56.13 ? C7 OLA 404 A 1 HETATM 8 C C8 OLA . . . E 3 16.59 -38.693 -16.554 1 60.87 ? C8 OLA 404 A 1 HETATM 9 C C9 OLA . . . E 3 16.538 -37.343 -15.974 1 61.57 ? C9 OLA 404 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #